Re: [R] [ggplot2] Densityplot, grouping and NAs

2009-03-25 Thread Bernd Weiss
ONKELINX, Thierry schrieb: Dear Bernd, Omitting the NA values from the dataset will work. ggplot(aes(x = x, color = g), data = na.omit(mydf)) + geom_density() Dear Thierry, thanks for your reply! Of course, regarding my little toy example na.omit() perfectly works. However, my real data se

[R] Add prediction interval forest plot (package "meta")

2013-06-06 Thread Bernd Weiss
Dear all, I am struggling to add a prediction interval to a forest plot that was created with forest.meta(), package "meta". I checked the source of forest.meta() and realized that it is heavily relying on grid. I am lacking any experience with grid graphics. So, I am having difficulties to find

Re: [R] interpreting weight in meta-analysis of proportion

2014-04-18 Thread Bernd Weiss
On 18.04.2014 13:02, petre...@unina.it wrote: > Prof. Dewey, sorry for the trivial question and many thank for the replay. > > >> Using which package? > > In this case I used the meta package, but I know that for all but the > DerSimonian-Laird method the R function rma.uni of R package metafor

Re: [R] Visualization of coefficients

2010-07-02 Thread Bernd Weiss
Am 02.07.2010 08:10, schrieb Wincent: > Dear all, > > I try to show a subset of coefficients in my presentation. It seems > that a "standard" table is not a good way to go. I found figure 9 > (page 9) in this file ( > http://www.destatis.de/jetspeed/portal/cms/Sites/destatis/Internet/DE/Content

Re: [R] Problem using R and Beamer...

2010-08-03 Thread Bernd Weiss
Am 04.08.2010 06:21, schrieb Jeffry Madura: [...] Can anyone explain to me what is going on here? The frame code in latex is \begin{frame}{fragile} \frametitle{Numbers} \textbf{Numbers} can be represented in a variety of different formats. For example the number $1.2345\times 10^5$ is written

Re: [R] Regex and gsub

2010-05-11 Thread Bernd Weiss
Am 11.05.2010 10:37, schrieb arnaud Gaboury: > Dear group, > > Here is my df : > > df3 <- > structure(list(DESCRIPTION = c("COPPER May/10", "COTTON NO.2 Jul/10", > "CRUDE OIL miNY May/10", "GOLD Jun/10", "ROBUSTA COFFEE (10) Jul/10", > "SOYBEANS Jul/10", "SUGAR NO.11 Jul/10", "SUGAR NO.11 May/1

Re: [R] regex and sub

2010-05-14 Thread Bernd Weiss
Am 14.05.2010 12:10, schrieb arnaud Gaboury: > Dear group, > > Here is an object: > > z <- > c("LSCPos100415.csv", "LSCPos100416.csv", "LSCPos100419.csv", > "LSCPos100420.csv", "LSCPos100421.csv", "LSCPos100422.csv", > "LSCPos100423.csv", > "LSCPos100426.csv", "LSCPos100427.csv", "LSCPos100428.

Re: [R] write all the permutations of a set

2011-03-24 Thread Bernd Weiss
Am 24.03.2011 11:28, schrieb Arnau Mir: Hello. Somebody knows how to write in R all the permutations of a given set? For example, is the set is {a,b,c} I want the following: a,b,c a,c,b b,c,a b,a,c c,a,b c,b,a library(gregmisc) permutations(3, 3, letters[1:3]) gives [,1] [,2] [,3] [1,]

Re: [R] Quick recode of -999 to NA in R

2011-03-30 Thread Bernd Weiss
Am 30.03.2011 09:15, schrieb Christopher Desjardins: Hi, I am trying to write a loop to recode my data from -999 to NA in R. What's the most efficient way to do this? Below is what I'm presently doing, which is inefficient. Thanks, Chris dat0<- read.table("time1.dat") colnames(dat0)<- c("e

Re: [R] regular expression

2011-03-31 Thread Bernd Weiss
Am 31.03.2011 19:31, schrieb array chip: Hi, I am stuck on this: how to specify a match pattern that means not to include "abc"? I tried: grep("^(abc)", "hello", value=T) should return "hello". > grep("[^(abc)]", "hello", value=T) [1] "hello" HTH, Bernd ___

Re: [R] regular expression

2011-03-31 Thread Bernd Weiss
Am 31.03.2011 21:06, schrieb array chip: Ok then this code didn't do what I wanted. I want "not including 'arg' before '.symptom'", not individual letters of "arg", but rather as a word. Bill Dunlap suggested using invert=T, it works for single 1 condition, but not for 2 conditions here: not inc

Re: [R] regression line on boxplots

2011-04-01 Thread Bernd Weiss
Am 01.04.2011 11:24, schrieb Yan Jiao: Dear R users, I'm trying to add a regression line on my boxplots (something like:boxplot(c(1:3),c(4:6),c(5:8))) But I can't see it. Please help !!! It's not a April fool's joke!!! Your sample data does not make any sense (at least to me). I would do it a

Re: [R] Change color in forest.rma (metafor)

2011-08-24 Thread Bernd Weiss
Am 24.08.2011 07:50, schrieb Paola Tellaroli: > My script is the following: > > library(metafor) > > yi<-c(-0.1, 0.2, 0.3, 0.4) > sei<-c(0.4, 0.2, 0.6, 0.1) > vi<-sei^2 > studi<-c("A", "B", "C", "D") > eventi.c<-c(10, 5, 7, 6) > n.c<-c(11, 34, 25, 20) > eventi.a<-c(2, 7, 6, 5) > n.a<-c(11, 35, 25

[R] Lattice: key does not accept German umlaute

2008-06-06 Thread Bernd Weiss
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 library(lattice) ## works as expected xyplot(1~1, key = list(text = list(c("Maenner" ## works as expected xyplot(1~1, key = list(text = list(c("Maenner"))), xlab = "M\344nner") ## gives an error xyplot(1~1, key = list(text = list(c("M\344nner")

Re: [R] Lattice: key does not accept German umlaute

2008-06-06 Thread Bernd Weiss
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Bernd Weiss schrieb: | library(lattice) | | ## works as expected | xyplot(1~1, key = list(text = list(c("Maenner" | | ## works as expected | xyplot(1~1, key = list(text = list(c("Maenner"))), xlab = "M\344nner") | |

Re: [R] Lattice: key does not accept German umlaute

2008-06-06 Thread Bernd Weiss
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Prof Brian Ripley schrieb: [...] | It works correctly for me in CP1252 with R-patched, and gives an error | in 2.7.0 (and works in 2.6.2). I think it was fixed as side effect of | | oRare string width calculations in package grid were not |

Re: [R] Odp: Question about collapse/aggregate and avoidance of loops

2009-01-29 Thread Bernd Weiss
markle...@verizon.net schrieb: Thanks Petr because I sent Bernd a solution offline but yours is MUCH NICER. it's not worth showing you because it was pretty ugly. Dear Mark & Petr, Thank your very much! I like both solutions. Petr's is the more obvious one but Mark's solution is good for

Re: [R] Meta-Analyisis on Correlations

2009-02-13 Thread Bernd Weiss
Sebastian Stegmann schrieb: [...] The R packages "meta" and "rmeta" are, as far as I can see, set up for analysis with effect sizes for differences (i.e. comparison of the means/odds-ratios of experimental and control group). Only the function "metagen" from the "meta"-package looks like it

Re: [R] how to generate sequence "a" - "z"

2008-01-29 Thread Bernd Weiss
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 skestin schrieb: | I suppose it's very simple but I can't find the way to generate a sequence of | characters, e.g. from "a" to "z". | Could you please help me with this? ?letters letters HTH, B. -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.7

[R] ggplot2: histogram with proportions (or %)

2008-10-30 Thread Bernd Weiss
Dear all (Hadley, Thierry :-), I was wondering how to force ggplot/qplot(... geom="histogram") to plot proportions (or %) instead of counts/densities. Thanks for your help, Bernd __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/lis

[R] as.numeric(FALSE) fails after loading the Matrix package

2007-10-03 Thread Bernd Weiss
Dear all, is this a bug? > as.numeric(FALSE) [1] 0 > library(Matrix) Loading required package: lattice > as.numeric(FALSE) Error in UseMethod("as.double") : no applicable method for "as.double" > Regards, Bernd > version _ platform i386-pc-mingw32 arch i386 o

Re: [R] as.numeric(FALSE) fails after loading the Matrix package

2007-10-03 Thread Bernd Weiss
Bernd Weiss schrieb: > Dear all, > > is this a bug? > > >> as.numeric(FALSE) > [1] 0 >> library(Matrix) > Loading required package: lattice >> as.numeric(FALSE) > Error in UseMethod("as.double") : no applicable method for "as.double&qu

Re: [R] Plots in Meta-Analysis

2007-10-24 Thread Bernd Weiss
Heather Watson schrieb: > Hello, > > I have been working with the meta and rmeta packages in R. Is it possible to > plot both the fixed and random effects so they appear on the same plot? > Basically, I would like the plot to show the effects of each study, the > summary effect for the fixed

Re: [R] Putting column names in some automated way

2007-09-16 Thread Bernd Weiss
Megh Dal schrieb: > Dear all, > > I have following codes: > > colnames(data) = c("var", "var", "var") > i = c(1,2,3) > > Now I want construct a "for" loop starting from 1 to 3 to give the new names > of columns for dataframe "data" like below > > colnames(data) >> c("var1", "var2", "var3") >