Re: [R] Reading multiple tables from one .txt doc

2016-05-04 Thread Loris Bennett
Mark Fingerle writes: > Dear all, > I have a .txt file which contains multiple tables and I would like to > read these tables separately in order to create graphs for each one. > The tables are separated by a blank line, have a variable number of > lines, fixed nr. Of rows, have a header and a c

[R] Antwort: Re: selecting columns from a data frame or data table by type, ie, numeric, integer

2016-05-04 Thread Martin Maechler
> > on Wed, 4 May 2016 08:30:50 +0200 writes: > Hi All, > Hi Carl, > > I am not sure if this is useful to you, but I followed your conversation > and thought of you when I read this: > > for (i in 1:ncol(dataset)) { > if(class(dataset) == "character|numeric|factor|or whatsoever

Re: [R] Custom data structures inside of a hash function

2016-05-04 Thread Jeff Newmiller
It is impolite to put such a minor code fragment on a transient website. Also, this is a plain text mailing list... html usually gets stripped, damaging any advantage the HTML might have had and creating confusion for people reading your message, so please learn how to send plain text. You wrot

Re: [R] Grep command

2016-05-04 Thread Jeff Newmiller
Yes, but the answer is likely to depend on the actual patterns of strings in your real data, so the sooner you go find a book or tutorial on regular expressions the better. This is decidedly not R specific and there are already lots of resources out there. Given the example you provide, the p

[R] Antwort: Antwort: Re: selecting columns from a data frame or data table by type, ie, numeric, integer

2016-05-04 Thread G . Maubach
Hi Martin, many thanks for your answer and your broad explanation. I am a newbie to "R" and got help on this list and thought I could give something back what looked OK to me. regarding 0) You're right, it's pseudo code. I assumed that anybody on the list would be able to adapt the code to th

Re: [R] Antwort: Antwort: Re: selecting columns from a data frame or data table by type, ie, numeric, integer

2016-05-04 Thread PIKAL Petr
Hi > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of > g.maub...@weinwolf.de > Sent: Wednesday, May 4, 2016 10:06 AM > To: Martin Maechler > Cc: r-help@r-project.org > Subject: [R] Antwort: Antwort: Re: selecting columns from a data frame or > data tab

Re: [R] Grep command

2016-05-04 Thread Niels Jespersen
> x <- c("abc","def","rst","xyz","age","age2") > grep("^age$", x) [1] 5 > grep("^age2$", x) [1] 6 > > -Oprindelig meddelelse- Fra: R-help [mailto:r-help-boun...@r-project.org] På vegne af Steven Yen Sendt: 4. maj 2016 07:46 Til: r-help Emne: [R] Grep command Dear all In the grep command

Re: [R] R column assignment fails for lists

2016-05-04 Thread Yasir Suhail
Dear Jim and David, Thank you very much for your reply. I guess my question is whether it is legal to store vectors in the elements of a data.frame. These are useful for storing things like neighbors of a graph vertex, orthologs of a gene etc. I have been using data frames of this sort and they ar

Re: [R] expression input to a function

2016-05-04 Thread Duncan Murdoch
On 04/05/2016 7:11 AM, Naresh Gurbuxani wrote: I am trying to write a function, which can be made very general if one of the inputs can be an expression. How can this be done? For example, to find root of a function, I would like to say my.func <- function(x) {x^3 + 2 * (x^2) - 7} x.left <-

[R] Install on Xenial

2016-05-04 Thread Erich Neuwirth
I am trying to install R-3.3.0 on Xenial. I followed the instructions on the corresponding CRAN page, and I added the GPG key. But after adding deb https://cran.at.r-project.org//bin/linux/ubuntu xenial/ to /etc/apt/sources.list and sudo apt-get update I get the following error: Err:7 https://cra

Re: [R] Install on Xenial

2016-05-04 Thread Jeff Newmiller
Pick different mirror. -- Sent from my phone. Please excuse my brevity. On May 4, 2016 5:22:43 AM PDT, Erich Neuwirth wrote: >I am trying to install R-3.3.0 on Xenial. >I followed the instructions on the corresponding CRAN page, and I added >the GPG key. >But after adding >deb https://cran.at.

[R] undefined columns selected!

2016-05-04 Thread ch.elahe via R-help
Hi all, I know it seems simple but I am trying to copy a code and I don't know what is the problem with this command! msubsub=msub[,cn] the error I get is : error in '[.data.frame '(msub, ,cn) : undefined columns selected Thanks for any help, Elahe _

Re: [R] undefined columns selected!

2016-05-04 Thread John McKown
On Wed, May 4, 2016 at 8:05 AM, ch.elahe via R-help wrote: > > Hi all, > I know it seems simple but I am trying to copy a code and I don't know > what is the problem with this command! > > msubsub=msub[,cn] > > the error I get is : error in '[.data.frame '(msub, ,cn) : undefined > columns sel

Re: [R] undefined columns selected!

2016-05-04 Thread Bert Gunter
The the column name must be quoted in the index: msubsub=msub[,"cn"] Please go through a basic R tutorial or two if you want to learn to use R. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley

Re: [R] undefined columns selected!

2016-05-04 Thread MacQueen, Don
First, type names(msub) and then type cn and compare the output. Probably, you will find a name in cn that is not among the names of msub. To maybe make it easier to see the missing column(s), you can type setdiff(cn, names(msub)) The expression msub[,cn] is intended to select columns

[R] Changing transformations in mi package

2016-05-04 Thread Elizabeth Hensor
Dear all, I am an R beginner and new to the list. In preparation for using mi to impute missing values I am setting up the missing data frame and would like to specify the transformation types for some of my variables, as I will be using these transformations in my analysis models. According to

[R] copula package error when gumbel parameter is close to bound.

2016-05-04 Thread Jérémie Juste
Hello, In a situation where the dimension is high and the parameter is close to the bound computing the density of the gumbel copula throws the following error. library(copula) dCopula(rep(0.5,127),gumbelCopula(1.19,127),log=TRUE) Loading required namespace: Rmpfr Failed with error: ‘there is n

[R] how to compute Bonferroni, Tukey's, Sheffe 95%-condence intervals for coefficients B1, B2, B3 in linear regression?

2016-05-04 Thread super
Dear experts,     I have a problem in compute Bonferroni,Tukey's,Sheffe 95%-condence intervals for coefficients B1,B2,B3 in linear regression using R? how can i do it? I only know how to compute these three cofindence intervals in multicomparsion by using multcomp package, and i am search a lot

Re: [R] Grep command

2016-05-04 Thread Doran, Harold
You asked this question yesterday, and received responses on this same response. Is there a reason this is reposted? -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Steven Yen Sent: Wednesday, May 04, 2016 1:46 AM To: r-help Subject: [R] Grep command

[R] Robust MARS regression with R ?

2016-05-04 Thread varin sacha via R-help
Dear R-helpers, I would like to know if it is possible using R (earth packages or another one) to realize robust MARS regression RMARS or RCMARS (C mean "conic"). Some authors have done it using MOSEK combined with Salford-MARS and special MATLAB programs. Best Regards, Sacha ___

Re: [R] Grep command

2016-05-04 Thread David Winsemius
> On May 3, 2016, at 11:16 PM, Jeff Newmiller wrote: > > Yes, but the answer is likely to depend on the actual patterns of strings in > your real data, so the sooner you go find a book or tutorial on regular > expressions the better. This is decidedly not R specific and there are > already l

Re: [R] Antwort: Re: selecting columns from a data frame or data table by type, ie, numeric, integer

2016-05-04 Thread Carl Sutton via R-help
Hi Martin and list: First let me thank you for thinking of me.   It is probably apparent that my programming experience is limited, and the vector aspect of R has taken some getting used to.   A very very long time ago I did some programming in Fortran and for loops and if statements were ordina

Re: [R] Grep command

2016-05-04 Thread William Dunlap via R-help
No matter how expert you are at writing regular expressions, it is important to list which sorts of strings you want matched and which you do not want matched. Saying you want to match "age" but not "age2" leads to lots of possibilities. Saying how you want to categorize each string in a vector o

Re: [R] greek characters in Figures

2016-05-04 Thread Alaios via R-help
> install.packages("latex2exp")Installiere Paket nach > ‘/home/apa/R/x86_64-pc-linux-gnu-library/3.2’(da ‘lib’ nicht > spezifiziert)Warnung: kann nicht auf den Index für das Repository > https://cran.cnr.Berkeley.edu/src/contrib zugreifen:  nicht unterstütztes URL > SchemaWarnmeldung:Paket ‘lat

Re: [R] greek characters in Figures

2016-05-04 Thread David Winsemius
> On May 4, 2016, at 10:53 AM, Alaios wrote: > > > install.packages("latex2exp") > Installiere Paket nach ‘/home/apa/R/x86_64-pc-linux-gnu-library/3.2’ > (da ‘lib’ nicht spezifiziert) > Warnung: kann nicht auf den Index für das Repository > https://cran.cnr.Berkeley.edu/src/contrib zugreifen: >

Re: [R] Help regarding Community Detection Algorithm in R (like Propagation, Walktrap)

2016-05-04 Thread Swagatam Basu
kindly help me ..from where do i get sample code and details about community detection... Thanks Swagatam Basu On Mon, May 2, 2016 at 2:25 PM, Swagatam Basu wrote: > Hi > > I am very new to R studio and R language. I have installed the R studio in > my machine. > > I need to do a community det

Re: [R] copula package error when gumbel parameter is close to bound.

2016-05-04 Thread Jeremie Juste
Hello > Berwin A Turlach writes: > That you don't have the package Rmpfr installed? And it seems to be > needed for the higher dimension. On my machine it works: > Thanks for the lead, Best regards, Jeremie __ R-help@r-project.org mailing list -

[R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread C&A Säger
Hello, First time user on Ubuntu 14.4 with Ubuntus R Commander and > $ R --version > R version 3.0.2 (2013-09-25) -- "Frisbee Sailing" > Copyright (C) 2013 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu (64-bit) The program icon of the commander executes > sh -c 'R_D

Re: [R] Help regarding Community Detection Algorithm in R (like Propagation, Walktrap)

2016-05-04 Thread Bert Gunter
Please do not re-post. Search on your own. Entering "community detection" at the rseek.org R search site brought up many hits, especially from the igraph package. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Op

Re: [R] how to compute Bonferroni, Tukey's, Sheffe 95%-condence intervals for coefficients B1, B2, B3 in linear regression?

2016-05-04 Thread David Winsemius
> On May 4, 2016, at 7:45 AM, super wrote: > > > Dear experts, >I have a problem in compute Bonferroni,Tukey's,Sheffe 95%-condence > intervals for coefficients B1,B2,B3 in linear regression using R? how can i > do it? I only know how to compute these three cofindence intervals in > mult

Re: [R] Changing transformations in mi package

2016-05-04 Thread David L Carlson
Thank you for providing a working example. I think you need to contact the package maintainer: > maintainer("mi") [1] "Ben Goodrich " When I run your code it appears that the c column is correctly transformed to square roots, but the show() function is incorrectly indicating a log transform: >

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread Jim Lemon
Hi Andreas, Try installing plyr, arm, scales and mi separately. If you get an error message about a version mismatch, that's where your problem is. _Sometimes_ upgrading R will fix it, if the problem is that the version you are downloading is too new for your R version. Jim On Thu, May 5, 2016 at

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread Jeff Newmiller
Did you follow the instructions for setting up apt to pull recent versions of R, as described in CRAN? I suspect not, since your version is old. -- Sent from my phone. Please excuse my brevity. On May 4, 2016 11:51:27 AM PDT, "C&A Säger" wrote: >Hello, > >First time user on Ubuntu 14.4 with Ub

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread C&A Säger
Am 05.05.2016 um 00:17 schrieb Jim Lemon: > Hi Andreas, > Try installing plyr, arm, scales and mi separately. If you get an > error message about a version mismatch, that's where your problem is. > _Sometimes_ upgrading R will fix it, if the problem is that the > version you are downloading is too

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread Fox, John
Dear Andreas, As has been suggested, you're probably better off using an up-to-date version of R and corresponding up-to-date packages, but if the only issue is that sem can't be installed, the Rcmdr package should still work. The menu item for confirmatory factor analysis will be missing, and

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread C&A Säger
Am 05.05.2016 um 01:41 schrieb Jeff Newmiller: > Did you follow the instructions for setting up apt to pull recent > versions of R, as described in CRAN? I suspect not, since your version > is old. > -- Hello Jeff, Thank you very much for taking notice. I was hoping that any old version which u

Re: [R] Can't resolve dependency problems with package "sem"

2016-05-04 Thread Jeff Newmiller
An old version of R would be fine if that was all you wanted, but no, you want all the latest contributed packages as well. I can't blame you for that, but don't blame R for difficulties with contributed packages that have external dependencies and depend on recent versions of R. You might find