Le 13/11/2014 01:26, MacQueen, Don a écrit :
Along the lines of what Bert Gunter said, the ideal way to represent I agree that LDL is a special case of what could be named ODL (Out of
detection limit).
To answer to Bert Gunter, indeed if LDL (or ODL) values are changed into
NA, the results will
?Dear All
I have some data expressed in geometric means and 95% confidence intervals.
Can I code them in metafor as:
rma(m1i=geometric mean 1, m2i=geometric mean 2, sd1i=geometric mean 1 CI /3.92,
sd2i=geometric mean 2 CI/3.92...etc, measure="MD")
All of the studies use geometric means.
On 13/11/2014 11:00, Purssell, Ed wrote:
?Dear All
I have some data expressed in geometric means and 95% confidence intervals.
Can I code them in metafor as:
rma(m1i=geometric mean 1, m2i=geometric mean 2, sd1i=geometric mean 1 CI /3.92,
sd2i=geometric mean 2 CI/3.92...etc, measure="
On 13/11/2014 11:08, Marc Girondot wrote:
Le 13/11/2014 01:26, MacQueen, Don a écrit :
Along the lines of what Bert Gunter said, the ideal way to represent
I agree that LDL is a special case of what could be named ODL (Out of
detection limit).
To answer to Bert Gunter, indeed if LDL (or ODL) va
As you may know already, that design can be considerably improved by making the
wheel triangular, reducing the bump count per revolution by a full 25%
-pd
On 13 Nov 2014, at 16:17 , Keith Jewell wrote:
> You are re-inventing the wheel and yours will probably end up square!
--
Peter Dalgaard
On Thu, 13 Nov 2014, peter dalgaard wrote:
As you may know already, that design can be considerably improved by
making the wheel triangular, reducing the bump count per revolution by a
full 25%
It has been written that those who go around in circles think of
themselves as big wheels.
Rich
On Thu, 13 Nov 2014, Keith Jewell wrote:
You are re-inventing the wheel and yours will probably end up square!
R already has facilities for handling censored data, e.g. Surv in the
survival package (which despite its name is applicable to applications other
than survival analysis).
There i
Hello —
I am using inline C functions within foreach %dopar% loop. On SMP (doParallel,
doMP) it works but on MPI-based clusters (doMPI) it does’t. The reason, I
think, is because the object code produced using the inline package,
essentially an .so file, does not get copied onto the worker node
Dear colleagues,
In the function multinom (package nnet), I get the following message after
training for a model with 9 inputs and 6 classes (output) :
# weights: 66 (50 variable)
I understand that there are 50 variables in the model,
but I don't understand the number 66.
How can we interpret
I have a bit of trouble here to program in r. I am anew user but i really enjoy
working with it.I have a large number of variables in a matrix that are
arranged sequentially on a line (chromosome). This order has to be maintained
whatsoever. I am to develop an r algorithm that will develop group
Hello togehter,
i have a little problem. Maybe anyone can help me.
I have 2 data.frames, which look like as follows:
First:
NAMEMONTH BONUS
1 Andy 2014-10 100
2 Pete 2014-10200
3 Marc2014-10300
4 Andy2014-11400
Se
Hello,
See ?merge, in particular the argument 'all'.
dat1 <- read.table(text = "
NAMEMONTH BONUS
1 Andy 2014-10 100
2 Pete 2014-10200
3 Marc2014-10300
4 Andy2014-11400
", header = TRUE, stringsAsFactors = FALSE)
merge(df1, df2, all=TRUE)
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Thu, Nov 13, 2014 at 6:02 AM, Matthias Weber <
matthias.we...@fntsoftware.com> wrote:
> Hello togehter,
>
> i have a little problem. Maybe anyone can help me.
>
> I have 2 data.frames, which look like as follows:
> First:
On 13/11/2014 14:02, Matthias Weber wrote:
Hello togehter,
i have a little problem. Maybe anyone can help me.
I think you might find
?merge
enlightening
Indeed given that the word merge occurs in your subject line and your
text it is surprising you have not already found it.
I have 2 d
Hi,
the print of rpart fitting gives the summary of tree
I would like to save the console text of:
fit <- rpart(formula, data)
summary <- print(fit)
when I look in "summary" I did not find the same thing as in
"print(rpart)"
[1] "Clinical Data exists"
[1] "merging samples from Clinical an
Hi,
All right for rpart package but it seems there is a confusion in "text"
function.
prp is not found
Error in fun() : could not find function "prp"
Thanks
Ô__
c/ /'_;kmezhoud
(*) \(*) ⴽⴰⵔⵉⵎ ⵎⴻⵣⵀⵓⴷ
http://bioinformatics.tn/
[[alternative HTML version deleted]]
___
Use capture.output(), as in
> junk <- capture.output(summary(1:10))
> junk
[1] " Min. 1st Qu. MedianMean 3rd Qu.Max. "
[2] " 1.003.255.505.507.75 10.00 "
> cat(junk, sep="\n")
Min. 1st Qu. MedianMean 3rd Qu.Max.
1.003.255.505.5
Yes Thanks! that works,
but I loose the \n when I would like to save or edit it.
getTextInWindows is a function that edits any text in editor.
getTextInWindows(summary): without "\n"
save (file= "junk.txt", junk):without "\n"
getTextInWindow(capture.output(cat(junk, sep = "\n"))) :No works
Thank
Use paste(collapse="\n", junk) if you want it as a single string with \n's
in it.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Thu, Nov 13, 2014 at 1:13 PM, Karim Mezhoud wrote:
> Yes Thanks! that works,
> but I loose the \n when I would like to save or edit it.
>
> getTextInWindows is a fun
OK thanks
That works.
:)
Ô__
c/ /'_;kmezhoud
(*) \(*) ⴽⴰⵔⵉⵎ ⵎⴻⵣⵀⵓⴷ
http://bioinformatics.tn/
On Thu, Nov 13, 2014 at 10:41 PM, William Dunlap wrote:
> Use paste(collapse="\n", junk) if you want it as a single string with \n's
> in it.
>
> Bill Dunlap
> TIBCO Software
> wdunlap tibco
Hello,
I'm trying to generate plain text from the .Rd files. I run "R CMD
Rd2txt xx.Rd -o xx.txt" to get the plain text file. When I open the
text file, I see "_^H" in front of each character in all section
titles. I can't figure out where the problem is. If I don't specify -o
argument, "R CMD Rd2
I have a straightforward application of ddply() and summarize():
ddply(MyFrame, .(Treatment, Week), summarize, MeanValue=mean(MyVar))
This works just fine:
Treatment Week MeanValue
1MyDrug BASELINE 5.91
2MyDrugWEEK 1 4.68
3MyDrugWEEK 2 4.08
4MyDr
While importing .csv files into R, all data are converted to factor-by
default. But, how can I preserve the original format of the data like
numeric to numeric, integer to integer, character to character etc while
importing from csv to R environment.
I tried several ways, no thing helps. I used 's
On Nov 13, 2014, at 3:31 PM, John Posner wrote:
> I have a straightforward application of ddply() and summarize():
>
> ddply(MyFrame, .(Treatment, Week), summarize, MeanValue=mean(MyVar))
>
> This works just fine:
>
> Treatment Week MeanValue
> 1MyDrug BASELINE 5.91
> 2My
On Nov 13, 2014, at 4:28 PM, Ramesh Gautam wrote:
> While importing .csv files into R, all data are converted to factor-by
> default. But, how can I preserve the original format of the data like
> numeric to numeric, integer to integer, character to character etc while
> importing from csv to R e
On 13/11/2014, 2:51 PM, Zheng Da wrote:
> Hello,
>
> I'm trying to generate plain text from the .Rd files. I run "R CMD
> Rd2txt xx.Rd -o xx.txt" to get the plain text file. When I open the
> text file, I see "_^H" in front of each character in all section
> titles. I can't figure out where the pr
On 14/11/14 13:59, Duncan Murdoch wrote:
On 13/11/2014, 2:51 PM, Zheng Da wrote:
Hello,
I'm trying to generate plain text from the .Rd files. I run "R CMD
Rd2txt xx.Rd -o xx.txt" to get the plain text file. When I open the
text file, I see "_^H" in front of each character in all section
titles.
On Nov 13, 2014, at 11:51 AM, Zheng Da wrote:
> Hello,
>
> I'm trying to generate plain text from the .Rd files. I run "R CMD
> Rd2txt xx.Rd -o xx.txt" to get the plain text file. When I open the
> text file, I see "_^H" in front of each character in all section
> titles. I can't figure out wher
Thank you. Great help!
Given your information, we can generate text files without _^H with
the following command:
echo "tools::Rd2txt(\"$input_file\", out=\"$output_file\",
options=list(underline_titles=FALSE))" | R --no-save
It's kind tedious though.
I'm just curious. Which text editor can actual
> Which text editor can actually display _^H correct?
Not aware of any. It is from very old line printer behavior, which most (all?)
printers can still support even though few computers are set up to utilize it.
---
Jeff Newm
Good Morning Sir/Ma,
I am POPOOLA DANIEL a Forest Biometrician in making from the University of
Ibadan, Ibadan Nigeria. Please Sir/Ma I am having issues on performing
Non-linear mixed model on R (using maximum likelihood approach). I am trying to
input four different measured variables which are
Hi
Your original numeric data probably contain something which prevents read.* to
accept them as numeric (decimal point, white space)
what is result of
str(imported.data)
Petr Pikal
> -Original Message-
> From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
> project.org] On B
Hi
1. Do not post in html
2. Post example of data, preferably by dput function
3. Based on posted data explain what do you want to achieve
4. As it seems to be biological issue did you look at Bioconductor?
Cheers
Petr
> -Original Message-
> From: r-help-boun...@r-
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