Re: [R] vegan capscale 'subscript out of bounds' error

2013-07-15 Thread Zhao Jin
Dear Jari, Thanks a lot for your reply. Let me describe more about my dataset: it consists of count data for samples, and shows how many copies of a certain bacteria are in a sample. There are 92 samples (rows), and about 3500 kinds of bacteria (columns). Variable 1 (Var1) is a factor indicati

Re: [R] vegan capscale 'subscript out of bounds' error

2013-07-13 Thread Jari Oksanen
Zhao Jin cornell.edu> writes: > I am using the capscale function in vegan_2.0-7 to do a constrained > principal coordinates analysis, and I kept getting the following error > message: > Error in Y.r[, oo, drop = FALSE] : subscript out of bounds > > I googled but I couldn't find an answer. Could