Using nmds from package labdsv will work, but you are confusing some
elements with ordiplot from package vegan. The plot function in labdsv
does not produce a new object, it simply plots the requested ordination.
There is an accompanying command "plotid" that puts labels on the
ordonation.
On Wed, 2007-11-14 at 15:19 -0300, Antonio Olinto wrote:
> Hi Gavin, thanks for your message.
>
> You are right. The function nmds is from library labdsv and not from vegan. My
> mistake.
>
> Well, that's what I did:
>
> library(vegan)
> library(labdsv)
> nms.euc <- nmds(dis.euc,4)
> initial va
Hi Gavin, thanks for your message.
You are right. The function nmds is from library labdsv and not from vegan. My
mistake.
Well, that's what I did:
library(vegan)
library(labdsv)
nms.euc <- nmds(dis.euc,4)
initial value 13.457832
iter 5 value 8.589716
iter 10 value 7.989993
iter 15 value 7
On Wed, 2007-11-14 at 11:22 -0300, Antonio Olinto wrote:
> Hi,
>
> I'm using nmds command (library vegan) to analyze some fishing data.
I doubt it - there is no nmds command. Do you mean metaMDS() ? This uses
isoMDS() from package MASS with some extra features.
>
> I'd like to plot not only poi
4 matches
Mail list logo
