Jean,
I have attached an example set of data. The code for reading and
manipulating it before display as a heatmap is as follows:
Apo_Mut<-read.table("Example_Data.txt")
require(cluster)
blah <- agnes(as.matrix(max(Apo_Mut)-Apo_Mut))
blah2<-as.hclust(blah)
LabsDend <- as.dendrogram(blah2)
RowCol
If you provide some example data in reproducible code, I might be able to
help. Otherwise, not much I can do.
Jean
JIMonroe wrote on 10/08/2012 01:17:55 AM:
>
> Jean,
>
> It's definitely bigger now, but my axes are cut-off. As in your
example, I
> had them drawn after generating the heat
Jean,
It's definitely bigger now, but my axes are cut-off. As in your example, I
had them drawn after generating the heatmap, but the image does not seem to
be centered. I think even part of the heatmap is getting cut off, which
wasn't happening until I explicitly set the width and height of the
Jacob,
Try increasing the size of the pdf. For example, I can read all 919
labels in this plot ...
pdf(width=200, height=200)
plot(1:919, 1:919, axes=FALSE)
axis(1)
axis(2, at=1:919, las=1, cex=0.01)
box()
graphics.off()
Jean
JIMonroe wrote on 10/01/2012 03:42:24 PM:
>
> Hello,
> I have a
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