Re: [R] valid package repositories

2017-10-02 Thread Jordan J
I would be on a similar wavelength to Peter, I believe it should be more about the state of the package rather than the location. Yes, the location matters to a degree but I think GitHub is more than well enough established at this point to consider their hosting sufficiently reliable. The most im

Re: [R] valid package repositories

2017-10-02 Thread Henrik Bengtsson
Here's my view on this: CRAN = Comprehensive R Archive Network. The "Archive" part is very important - it "promises" the research community that R packages that have ever been published on CRAN, and all the versions of each package, will be available also in the future. It requires quite a bit f

Re: [R] valid package repositories

2017-10-02 Thread Berend Hasselman
> On 2 Oct 2017, at 16:47, Federico Calboli > wrote: > . > As a referee I am trying to weed out what I see as malpractice: the promise > that third parties outside the developers might actually use the code because > it has been packaged as a R library, a claim that seems to boost publish

Re: [R] valid package repositories

2017-10-02 Thread Jeff Newmiller
I tend to regard GitHub as a bit of wild west... anyone can upload anything there, working or not. CRAN packages at least have to compile so there is some additional verification in being there. GitHub does have the advantage that you can easily download it and run an example if the authors hav

Re: [R] valid package repositories

2017-10-02 Thread Peter Langfelder
On Mon, Oct 2, 2017 at 7:47 AM, Federico Calboli wrote: > > Thus my question: when can I consider a library to be properly published and > really publicly available? CRAN and BioConductor are clearly gold standards. > What about Github? I am currently using the rule ‘not on CRAN == outright

[R] valid package repositories

2017-10-02 Thread Federico Calboli
Hi All, I noticed that it is quite common to find in papers mentions to ‘R libraries’ developed for the algorithms/models/code/whatever that is being described by the paper, so that third parties will be able to use said method for themselves. On further enquiries these libraries are not actua