Re: [R] r-help volcano plot

2011-09-07 Thread Duny
Ben - I'm sorry, you're right! The following website shows how to make a volcano plot using ggplot2. http://bioinformatics.knowledgeblog.org/2011/06/21/volcano-plots-of-microarray-data/ Enjoy! Anna -- View this message in context: http://r.789695.n4.nabble.com/r-help-volcano-plot-tp3792651p3795

Re: [R] r-help volcano plot

2011-09-07 Thread KnifeBoot
Using R version 2.13.1 Windows 7 Ultimate 64-bit At 2011-09-06 14:51:09,"Hasan Diwan" wrote: >On 6 September 2011 08:01, KnifeBoot wrote: >>  Can't installe packag maDB or limma. > >Which R version, and what platform are you using? >-- >Sent from my mobile device >Envoyait de mon telephone mobil

Re: [R] r-help volcano plot

2011-09-06 Thread Ben Bolker
Duny gmail.com> writes: > > Use the ggplot2 package in order to make a volcano plot! Check out the > following book for more information about the package: ggplot2: Elegant > Graphics for Data Analysis (Use R) by Hadley Wickham. ggplot2 is great for > creating professional graphics in no time.

Re: [R] r-help volcano plot

2011-09-06 Thread Duny
Use the ggplot2 package in order to make a volcano plot! Check out the following book for more information about the package: ggplot2: Elegant Graphics for Data Analysis (Use R) by Hadley Wickham. ggplot2 is great for creating professional graphics in no time. If you look up stat_density in

Re: [R] r-help volcano plot

2011-09-05 Thread Hasan Diwan
On 6 September 2011 08:01, KnifeBoot wrote: >  Can't installe packag maDB or limma. Which R version, and what platform are you using? -- Sent from my mobile device Envoyait de mon telephone mobil __ R-help@r-project.org mailing list https://stat.ethz.

[R] r-help volcano plot

2011-09-05 Thread KnifeBoot
Can't installe packag maDB or limma. Error is shown as Using R version 2.13.1, biocinstall version 2.8.4. Installing Bioconductor version 2.8 packages: Is there any other way to draw volcano plot ? Thanks [[alternative HTML version deleted]] __