Re: [R] minor allele frequency comparison

2011-12-09 Thread David Winsemius
On Dec 9, 2011, at 2:44 AM, Scott Harding wrote: Hi all, We are using two methods to identify SNPs. One is based on resequencing the genome and aligning the reads to the sequenced genome to identify SNPs (data available for 44 individuals). Another is based on SNP array with selected

[R] minor allele frequency comparison

2011-12-08 Thread Scott Harding
Hi all, We are using two methods to identify SNPs. One is based on resequencing the genome and aligning the reads to the sequenced genome to identify SNPs (data available for 44 individuals). Another is based on SNP array with selected loci (3 loci, 870 individuals). I want to compare the