Thank you!
On Thu, Mar 12, 2020 at 12:47 PM Abby Spurdle wrote:
>
> The plotting character is determined by the pch argument.
> i.e. You need to specify the pch argument in the legend call.
>
> Here's the R code to preview the first 20 plotting characters:
>
> > plot (1:20, rep (0, 20), pch=1:20,
The plotting character is determined by the pch argument.
i.e. You need to specify the pch argument in the legend call.
Here's the R code to preview the first 20 plotting characters:
> plot (1:20, rep (0, 20), pch=1:20, ylim = c (-5, 5) )
> text (1:20, rep (1, 20), 1:20)
Empty circles, have a pc
Hi Ana,
I've already given you an example of using the text function with vectors.
I note that this thread contains a lot of duplication.
I'd recommend people read the whole thread before posting.
On Fri, Mar 13, 2020 at 3:42 AM Ana Marija wrote:
>
> Hi Michael,
>
> can you please send me a li
I could make legend via this:
qq(fdr2_sorted$FDR.q.val2, main = "RG_All", pch = 16,
col=fdr1_sorted$group, cex = 0.8, las = 1)
legend('topleft', legend = c('up-regulated', 'down-regulated'), fill =
c('red', 'blue'),bty="o")
but this gives me squares in legend. How do I write this code in order
to
Also how would I add legend to this plot?
I searched qqman pages and there is no mention of that
qq(fdr2_sorted$FDR.q.val2, main = "RG_All", pch = 16,
col=fdr1_sorted$group, cex = 0.8, las = 1)
On Thu, Mar 12, 2020 at 9:30 AM Ana Marija wrote:
>
> Hi Michael,
>
> can you please send me a line o
Hi Michael,
can you please send me a line of code showing how it would be done.
Thanks
Ana
On Thu, Mar 12, 2020 at 9:16 AM Michael Dewey wrote:
>
> Dear Ana
>
> You can specify the first three parameters to text() as vectors so it is
> all done in one call. That may or may not answer your quest
Dear Ana
You can specify the first three parameters to text() as vectors so it is
all done in one call. That may or may not answer your question.
Michael
On 12/03/2020 14:08, Ana Marija wrote:
HI David,
thank you for getting back to me.
Is there is a way for qq() to pick up text label name
HI David,
thank you for getting back to me.
Is there is a way for qq() to pick up text label names on its own or I
have to specify each one manually?
like in this example:
text( 2, 6, "arbitrary")
this is dput for
>a=head(fdr2_sorted)
> dput(a)
structure(list(NAME = c("GO_DNA_PACKAGING_COMPLEX"
On 3/10/20 9:51 PM, Ana Marija wrote:
Hello,
I am making QQ plot via:
library(ggman)
qq(fdr2_sorted$FDR.q.val2, main = "RG_All", pch = 17,
col=fdr1_sorted$group, cex = 1, las = 1)
I think you may be confusing the audience. There is no qq function in
the ggman package. There is however a q
I don’t need to use qqman package... if someone has any other solution
would be the most appreciated
On Wed, 11 Mar 2020 at 20:28, John Kane wrote:
> No idua how it works but the name suggests it in out of the Hadley
> universe and not basic graphics.
>
> On Wed, 11 Mar 2020 at 21:14, Abby Spur
No idua how it works but the name suggests it in out of the Hadley universe
and not basic graphics.
On Wed, 11 Mar 2020 at 21:14, Abby Spurdle wrote:
> One more thing, I can't find a CRAN package named "ggman".
>
> On Thu, Mar 12, 2020 at 1:59 PM Abby Spurdle wrote:
> >
> > Ok, then.
> >
> > Wh
One more thing, I can't find a CRAN package named "ggman".
On Thu, Mar 12, 2020 at 1:59 PM Abby Spurdle wrote:
>
> Ok, then.
>
> What graphics system is the qq function using?
> Assuming that it's using the base graphics system, look at the
> graphics::text function.
>
> text (1:10, 1:10, LETTERS
Ok, then.
What graphics system is the qq function using?
Assuming that it's using the base graphics system, look at the
graphics::text function.
text (1:10, 1:10, LETTERS [1:10])
If it's a different graphics system, then I don't know, but hopefully
someone else will help.
On Thu, Mar 12, 2020 a
Thanks for getting back to me but I would need this text labels added in
this particular instance
On Wed, 11 Mar 2020 at 19:37, Abby Spurdle wrote:
> > and I would like to get the plot like the one in attach.
> > Please advise,
>
> This is a bad idea.
> Plots should be *easy* to interpret.
>
> T
> and I would like to get the plot like the one in attach.
> Please advise,
This is a bad idea.
Plots should be *easy* to interpret.
Try to keep plots relatively simple, avoiding unnecessary details.
For nontrivial plots, use a caption to describe the main features of the plot.
(That's where your
Hello,
I am making QQ plot via:
library(ggman)
qq(fdr2_sorted$FDR.q.val2, main = "RG_All", pch = 17,
col=fdr1_sorted$group, cex = 1, las = 1)
data frames used look like this:
> head(fdr1_sorted)
NAME GS follow
link to MSigDB GS DETAILS SIZE
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