Re: [R] R and DBSCAN

2011-06-08 Thread Christian Hennig
Dear Paco, I tried dbscan on my computer with method="hybrid" and a 155000*3 data matrix and it works. Needs some time though. (You can track the progress using something like countmode=c(1:10,100,1000,1,10).) Note that for some reason I don't exactly understand, it takes *much* longer

Re: [R] R and DBSCAN

2011-06-07 Thread Paco Pastor
Hello Christian Thanks for answering. Yes, I have tried dbscan from fpc but I'm still stuck on the memory problem. Regarding your answer, I'm not sure which memory parameter should I look at. Following is the code I tried with dbscan parameters, maybe you can see if there is any mistake. sst

Re: [R] R and DBSCAN

2011-06-03 Thread Christian Hennig
Have you considered the dbscan function in library fpc, or was it another one? dbscan in fpc doesn't have a "distance" parameter but several options, one of which may resolve your memory problem (look up the documentation of the "memory" parameter). Using a distance matrix for hundreds of thou

[R] R and DBSCAN

2011-06-03 Thread Paco Pastor
Hello everyone, When looking for information about clustering of spatial data in R I was directed towards DBSCAN. I've read some docs about it and theb new questions have arisen. DBSCAN requires some parameters, one of them is "distance". As my data are three dimensional, longitude, latitude