oject.org] On Behalf Of Faradj Koliev
>> Sent: July 27, 2016 4:50 AM
>> To: r-help@r-project.org
>> Subject: [R] Likelihood ratio test in porl (MASS)
>>
>> Dear all,
>>
>> A quick question: Let’s say I have a full and a restricted model that looks
>> someth
is helps,
John
-
John Fox, Professor
McMaster University
Hamilton, Ontario
Canada L8S 4M4
Web: socserv.mcmaster.ca/jfox
> -Original Message-
> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Faradj Koliev
> Sent: July 27, 2016 4:50 AM
> To: r-help@r-project.or
On Wed, 27 Jul 2016, Faradj Koliev wrote:
Dear all,
A quick question: Let?s say I have a full and a restricted model that looks something like this:
Full<- polr(Y ~ X1+X2+X3+X4, data=data, Hess = TRUE, method="logistic?) # ordered logistic regression
Restricted<- polr(Y ~ X1+X2+X3, data=da
Dear all,
A quick question: Let’s say I have a full and a restricted model that looks
something like this:
Full<- polr(Y ~ X1+X2+X3+X4, data=data, Hess = TRUE, method="logistic”) #
ordered logistic regression
Restricted<- polr(Y ~ X1+X2+X3, data=data, Hess = TRUE, method="logistic”) #
or
Amanda Li uchicago.edu> writes:
>
> Hello,
>
> I am so sorry, but I have been struggling with
> the code for the entire day.
>
> I have a very simple dataset that looks like this:
> response=c(45,47,24,35,47,56,29)
> sub=c("A","A","B","B","C","C","C"£©
> time=c(1,2,1,2,1,2,3)
> gdata=cbind(re
Hello,
I am so sorry, but I have been struggling with the code for the entire day.
I have a very simple dataset that looks like this:
response=c(45,47,24,35,47,56,29)
sub=c("A","A","B","B","C","C","C"£©
time=c(1,2,1,2,1,2,3)
gdata=cbind(response,sub,time)
Namely, for three subjects, each has 2 o
Dear All,
I fitted two non-nested proportional hazards models using the coxph()
function from package survival. Now, I would like to apply a model
selection test like, e.g., the likelihood ratio test proposed by Vuong.
I found an implementation of Vuong's test in the package 'pscl', but
that
On Nov 10, 2012, at 11:57 AM, bgnumis bgnum wrote:
> Hi All
>
>
> I have to run multiple stimations and to compute Likelihhod ratio.
>
> If I compute ls function with coef and summary I can extract "outputs" that
> I need.
Do you mean "lm"?
>
> I am not able to find something similar to lo
Hi All
I have to run multiple stimations and to compute Likelihhod ratio.
If I compute ls function with coef and summary I can extract "outputs" that
I need.
I am not able to find something similar to log liklihood
Can you pease tell me running a ls function x on y how to extract if
posib
On Sun, 12 Jun 2011, Jorge Ivan Velez wrote:
Hi Diviya,
Take a look at the lrtest function in the lmtest package:
install.packages('lmtest)
require(lmtest)
?lrtest
Yes, when you have to nls() fits, say m1 and m2, you can do
lrtest(m1, m2)
However, I don't think that both m1 and m2 can be i
Hi Diviya,
Take a look at the lrtest function in the lmtest package:
install.packages('lmtest)
require(lmtest)
?lrtest
HTH,
Jorge
On Sun, Jun 12, 2011 at 1:16 PM, Diviya Smith <> wrote:
> Hello there,
>
> I want to perform a likelihood ratio test to check if a single exponential
> or a sum of
Hello there,
I want to perform a likelihood ratio test to check if a single exponential
or a sum of 2 exponentials provides the best fit to my data. I am new to R
programming and I am not sure if there is a direct function for doing this
and whats the best way to go about it?
#data
x <- c(1 ,10,
karuna m yahoo.com> writes:
> Can anybody tell me which R package has Lo-Mendell Rubin LR test and
> Bootstrap
> LR test to compare the model fit between k class and k+1 class model
> for Latent class analysis?
I don't know, but
library("sos")
findFn("Lo-Mendell")
findFn("{latent class ana
Dear R-help,
Can anybody tell me which R package has Lo-Mendell Rubin LR test and Bootstrap
LR test to compare the model fit between k class and k+1 class model for Latent
class analysis?
Thanks in advance,
warn regards,Ms.Karunambigai M
PhD Scholar
Dept. of Biostatistics
NIMHANS
Bangalore
India
On 2010-04-30 12:42, jh556 wrote:
Some quick googling suggests that they are the same thing. Thanks for the
help!
And note that profile likelihood CIs are produced by default on
glm objects, i.e. R uses MASS's confint.glm for glm objects.
confint.default(your model) let's you compare with Wa
Some quick googling suggests that they are the same thing. Thanks for the
help!
--
View this message in context:
http://r.789695.n4.nabble.com/Likelihood-ratio-based-confidence-intervals-for-logistic-regression-tp2077303p2077354.html
Sent from the R help mailing list archive at Nabble.com.
___
jh556 wrote:
I'm applying logistic regression to a moderate sized data set for which I
believe Wald based confidence intervals on B coefficients are too
conservative. Some of the literature recommends using confidence intervals
based on the likelihood ratio in such cases, but I'm having diffic
I'm applying logistic regression to a moderate sized data set for which I
believe Wald based confidence intervals on B coefficients are too
conservative. Some of the literature recommends using confidence intervals
based on the likelihood ratio in such cases, but I'm having difficulty
locating a
Davnah Urbach dartmouth.edu> writes:
> Thanks for this answer but does that mean that working
> with the deviances is better? Or how else could I
> evaluate the importance of my random terms?
You should probably (a) search the archives of the
r-sig-mixed-models mailing list
and (b) ask this
>
Thanks for this answer but does that mean that working with the deviances is
better? Or how else could I evaluate the importance of my random terms?
Many thanks,
Davnah
> On Mar 14, 2010, at 8:12 PM, hadley wickham wrote:
>
>>> Based on a discussion found on the R mailing list but dating
> Based on a discussion found on the R mailing list but dating back to 2008, I
> have compared the log-likelihoods of the glm model and of the glmer model as
> follows:
>
> lrt <- function (obj1, obj2){
> L0 <- logLik(obj1)
> L1 <- logLik(obj2)
> L01 <- as.vector(- 2 * (L0 - L1))
> df <- attr(L1,
I am currently running a generalized linear mixed effect model using glmer and
I want to estimate how much of the variance is explained by my random factor.
summary(glmer(cbind(female,male)~date+(1|dam),family=binomial,data= liz3"))
Generalized linear mixed model fit by the Laplace approximatio
Jim Silverton wrote:
Is there any package available in R to do the following hypothesis tests?
Testing the means of two Poissons (equivalent to the difference of two
proportions)
Testing the equality of two proportions from binomials
Testing the equality of proprtions of two negative binomials
(
Is there any package available in R to do the following hypothesis tests?
Testing the means of two Poissons (equivalent to the difference of two
proportions)
Testing the equality of two proportions from binomials
Testing the equality of proprtions of two negative binomials
(both conditional and un
For the third one:
?anova.glm
test=Chisq will be LRT.
For the first two, you can have the answer from ordinary stat book.
On Wed, Nov 5, 2008 at 1:11 PM, Maithili Shiva <[EMAIL PROTECTED]> wrote:
> Hi!
>
> I am working on the Logistic Regression using R. My R script is as follows
>
>
> ONS <-
Hi!
I am working on the Logistic Regression using R. My R script is as follows
ONS <- read.csv("ONS.csv",header = TRUE)
ONS.glm <- glm(Y ~ Age1+Age2+Sex+Education+Profession+TimeInJob+
TimeInCurrentJob+OwnResidence+Dependents+ApplIncome+FamilyInco+IIR+FOIR+YearsAtBank+SavingsAccount+CurrentAcc
Hi!
I am working on the Logistic Regression using R. My R script is as follows
ONS <- read.csv("ONS.csv",header = TRUE)
ONS.glm <- glm(Y ~ Age1+Age2+Sex+Education+Profession+TimeInJob+
TimeInCurrentJob+OwnResidence+Dependents+ApplIncome+FamilyInco+IIR+FOIR+YearsAtBank+SavingsAccount+CurrentAc
This particular case with a random intercept model can be handled by
glmmML, by bootstrapping the p-value.
Best, Göran
On Thu, Jul 17, 2008 at 1:29 PM, Douglas Bates <[EMAIL PROTECTED]> wrote:
> On Thu, Jul 17, 2008 at 2:50 AM, Rune Haubo <[EMAIL PROTECTED]> wrote:
>> 2008/7/16 Dimitris Rizopoulo
On Thu, Jul 17, 2008 at 2:50 AM, Rune Haubo <[EMAIL PROTECTED]> wrote:
> 2008/7/16 Dimitris Rizopoulos <[EMAIL PROTECTED]>:
>> well, for computing the p-value you need to use pchisq() and dchisq() (check
>> ?dchisq for more info). For model fits with a logLik method you can directly
>> use the foll
2008/7/16 Dimitris Rizopoulos <[EMAIL PROTECTED]>:
> well, for computing the p-value you need to use pchisq() and dchisq() (check
> ?dchisq for more info). For model fits with a logLik method you can directly
> use the following simple function:
>
> lrt <- function (obj1, obj2) {
>L0 <- logLik(
well, for computing the p-value you need to use pchisq() and dchisq()
(check ?dchisq for more info). For model fits with a logLik method you
can directly use the following simple function:
lrt <- function (obj1, obj2) {
L0 <- logLik(obj1)
L1 <- logLik(obj2)
L01 <- as.vector(- 2 *
Dear list,
I am fitting a logistic multi-level regression model and need to test the
difference between the ordinary logistic regression from a glm() fit and the
mixed effects fit from glmer(), basically I want to do a likelihood ratio test
between the two fits.
The data are like this:
My outc
R-helpers:
I have a question regarding the crr function of the cmprsk package for
performing competing risks regression. Specifically, I was wondering
if the standard likelihood ratio test for a categorical covariate
applies. For example:
# Make up a fake
On Sat, 5 Jan 2008, xinyi lin wrote:
> Hi,
>
> I want to do a global likelihood ratio test for the proportional odds
> logistic regression model and am unsure how to go about it. I am using
> the polr() function in library(MASS).
>
> 1. Is the p-value from the likelihood ratio test obtained by
> a
Hi,
I want to do a global likelihood ratio test for the proportional odds
logistic regression model and am unsure how to go about it. I am using
the polr() function in library(MASS).
1. Is the p-value from the likelihood ratio test obtained by
anova(fit1,fit2), where fit1 is the polr model with o
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