Re: [R] Help manipulating 23andme data in R - reproducing relationship results

2015-05-17 Thread Martin Morgan
On 05/17/2015 01:52 PM, Lyle Warren wrote: Thanks Jeff, Bert! You are right - definitely out of my skill area.. I've no found some help on the bioconductor mailing list. I'm not sure that you've asked in the right place https://support.bioconductor.org see also http://www.vincebuffalo.com/

Re: [R] Help manipulating 23andme data in R - reproducing relationship results

2015-05-17 Thread Lyle Warren
Thanks Jeff, Bert! You are right - definitely out of my skill area.. I've no found some help on the bioconductor mailing list. On 18 May 2015 at 03:04, Bert Gunter wrote: > (No response necessary) > > What struck me about this post was the apparent mismatch: the OP > seemed not to have a clue w

Re: [R] Help manipulating 23andme data in R - reproducing relationship results

2015-05-17 Thread Bert Gunter
(No response necessary) What struck me about this post was the apparent mismatch: the OP seemed not to have a clue where to begin. Maybe he somehow has been assigned or chose a task for which his skills and background are inadequate. This is not really a criticism: if someone told me to make a din

Re: [R] Help manipulating 23andme data in R - reproducing relationship results

2015-05-17 Thread Jeff Newmiller
This is a very domain-specific question (genetic data analysis), not so much a question about how to use R, so does not seem on topic here. I also suspect that the company 23andme may use some proprietary algorithms, so "replicating their results" could be a tall order. You might start with th

[R] Help manipulating 23andme data in R - reproducing relationship results

2015-05-17 Thread Lyle Warren
Hi, I'm trying to replicate 23andMe's parentage test results within R, using the 23andme raw data. Does anyone know a simple way to do this? I have read the data with gwascat and it seems to be in there fine. Thanks for any help you can give! Cheers, Lyle [[alternative HTML version del