Also, the original files were generated from Galaxy, and the three CDS
files were empty. Would that cause the problem? If so, how should I solve
it? I used reference sequence as the fasta file, and the gtf annotation
file from Ensembl.
Thanks,
Nancy
On Sun, Jan 5, 2014 at 11:12 AM, Yanxiang Shi
Hi Nancy --
cummeRbund is a Bioconductor package so please ask questions about it on the
Bioconductor mailing list.
http://bioconductor.org/help/mailing-list/mailform/
Be sure to include the maintainer packageDescription("cummeRbund")$Maintainer in
the email.
You have the 'latest' versio
Hi all,
I'm new to RNA-seq analysis. And I'm now trying to use R to visualize the
Galaxy data. I'm using the cummeRbund to deal with the data from cuffdiff
in Galaxy.
Here is the codes I've run:
> cuff= readCufflinks (dbFile = "output_database", geneFPKM =
"gene_FPKM_tracking", geneDiff = "gene_
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