Re: [R] Correlation Matrix in R

2011-11-01 Thread William Revelle
Alexandre, The output from corr.test is a list of matrices. To export one of those matrices, simply specify which one you want: Using the example from my previous note: > library(psych) > examp <- corr.test(sat.act) > mat.c.p <- lower.tri(examp$r)*examp$r + t(lower.tri(examp$p)*examp$p) > mat

Re: [R] Correlation Matrix in R

2011-11-01 Thread andrija djurovic
Hi, one solution is to use sink. Check ?sink to see explanation and following example. sink("sink-examp.txt") i <- 1:10 outer(i, i, "*") sink() Andrija On Tue, Nov 1, 2011 at 10:43 AM, AlexC wrote: > Hello, > > Thank you for your replies. I cannot run the function rcor.test even when > having

Re: [R] Correlation Matrix in R

2011-11-01 Thread AlexC
Hello, Thank you for your replies. I cannot run the function rcor.test even when having loaded package ltm. Perhaps it has to do with the fact that I am using the latest version of R and this package wasn't created under that version The function corr.test in package psych works fine. Is ther

Re: [R] Correlation Matrix in R

2011-10-26 Thread Mark Podolsky
Hi, rcor.test in library(ltm) will provide a correlation matrix with p-values on the bottom-half of the matrix. Mark On 2011-10-26, at 7:03 AM, AlexC wrote: > Thank you for your quick reply and helpful advice. > > Using this argument allows me to do what I needed to do > > Now the only othe

Re: [R] Correlation Matrix in R

2011-10-26 Thread William Revelle
Alex, corr.test in psych will give you a matrix of correlations, a matrix of sample sizes, and a matrix of probabilities. You can combine the correlations and the probabilities to form what you want: try the following: > library(psych) > examp <- corr.test(sat.act) > mat.c.p <- lower.tri(exa

Re: [R] Correlation Matrix in R

2011-10-26 Thread AlexC
Thank you for your quick reply and helpful advice. Using this argument allows me to do what I needed to do Now the only other thing I wanted to accomplish was to obtain the top half of the matrix with p values and the bottom half with the correlations, to observe the significant correlations. I

Re: [R] Correlation Matrix in R

2011-10-25 Thread R. Michael Weylandt
I believe it has to do with the "complete.obs" choice and the presence of NAs in your data. The differences should vanish with "pairwise.complete.obs" but whether that's what you want is up to you. Michael On Tue, Oct 25, 2011 at 5:09 PM, AlexC wrote: > Hi, > > I am currently working with a dat

[R] Correlation Matrix in R

2011-10-25 Thread AlexC
Hi, I am currently working with a data set which contains a list of julian dates of phenological (flowering, leaf growth etc.) I obtained a correlation matrix by simply using the cor function with the dataset cor(dataset,use="complete.obs") that gives me a correlation matrix but the correlatio