Hi Prasad,
I think this might be a problem with the package, and you can try to
contact the package author.
The error seem to arise because the pcr() cannot find the
'negative-binomial' distribution
```
library(qualityTools)
x <- rnbinom(500, mu = 4, size = 100)
pcr(x, distribution = "negat
Hi All,
i am very new to R and need guidance.
Need help in doing process capability Analysis for my data set (6 months of
data) given in below format:
Date | Opportunities | Defectives | DefectivesInPercent
I searched and found that pcr() from QualityTools package can be used for
this pur
om/questions/20094074/reproduce-stata-code-in-r-binomial-glm/20094514#20094514
glmt <- glm(data=dataset, cbind(c,s-c) ~ IndA + fia,
offset = offset, family = binomial(link = cloglog))
__
R-help@r-project.org mailing list
https://stat.ethz.ch/ma
Hello,
I'm not a Stata user so I'm trying to reproduce Stata results that are given to
me in R. I would like to use a GLM with a complementary log-log function. The
stata code I have is:
glm c IndA fia, family(binomial s) link(cloglog) offset(offset)
The R code is:
glmt <- glm(data=dat
Dear All,
I am playing with different models/packages (random forest, logistic
regression, gbm etc...) for a problem of binomial regression (i.e. the
outcome is 0/1, dead or alive etc...).
I have used in the past the multinom function from the nnet library which
uses the neural networks for multino
Hi Tal,
Thanks for replying.
(1) I am going to use cohort as a factor and (2) no, there are no strong
correlation between "cohort" and the other predictors.
I am using a binomial GLM and the lack of significance of "cohort" seems it
was due to one of the 11 levels (the base level) of this factor
Hi Lincoln,
Some thoughts:
1) Did you intend to use "cohort" as a factor and not as a numeric? (at
least that is what it looks like in your output)
2) Is there a strong correlation between "cohort" and the
other explanatory variables you are trying in your model?
Contact
Detail
Thanks Tal for answering,
Anyway I still have no idea on why the binomial GLM is missing the
relationship between the response variable and the explanatory variable
"cohort".
Is there anyone who might help me to understand this?
--
View this message in context:
http://r.789695.n4.nabble.com/Bi
Without going deeply into your analysis, 2 comments:
1) Use the anova command to test two nested models using:
anova(model1, model2, test="Chisq")
2) glm's are non-trivial models (at least to me), be sure to google for
some tutorials in order to understand what you are looking at...
Cheers,
Tal
Hi,
I have a data set with 999 observations, for each of them I have data on
four variables:
site, colony, gender (quite a few NA values), and cohort.
This is how the data set looks like:
> str(dispersal)
'data.frame': 999 obs. of 4 variables:
$ site : Factor w/ 2 levels "1","2": 1 1 1 1 1 1
On Mar 28, 2012, at 4:26 PM, McGuire, Rhydwyn wrote:
> Hi everyone.
>
>
> I need to do a sample size calculation for a one sample based on a CI
> interval of +- 5% of the proportion, we expect to have a rate of 0.07 based
> on similar studies. I have looked at the pwr-package as well as the
Hi everyone.
I need to do a sample size calculation for a one sample based on a CI interval
of +- 5% of the proportion, we expect to have a rate of 0.07 based on similar
studies. I have looked at the pwr-package as well as the power.prop.test
function, but I can't see how to make either do wha
Not really an R question, now is it ? more like pure stats. I'm
guessing you didn't get an answer because this list can't tell you how
to analyze your data (or in your case, approve an incorrect analysis).
Regarding the part of your question that is R related, I think you may
be confused on what t
After looking at 48 glm binomial models I decided to try the quasibinomial
with the top model 25 (lowest AIC). To try to account for overdispersion
(residual deviance 2679.7/68 d.f.) After doing so the dispersion factor is
the same for the quasibinomial and less sectors of the beach were
significa
On Sat, 2011-10-15 at 09:11 -0700, lincoln wrote:
> #Uwe:
> #Gavin:
>
> I have read carefully your thread but I am not sure to understand what you
> are suggesting (my gaps in statistics!). You say that it should be due to
> the /Hauck Donner/ effect and that it is not a quasi separation or
> sep
#Uwe:
I have realized that in the firstly linked post (
http://r.789695.n4.nabble.com/OT-quasi-separation-in-a-logistic-GLM-td875726.html#a3850331
OT-quasi-separation-in-a-logistic-GLM ) I have told something misleading:
in fact my independent variables are not log-normally distributed since
the
On Fri, 2011-10-14 at 02:32 -0700, lincoln wrote:
> As you suggested I had a further look at the profile by changing default
> values of stepsize (I tried to modify the others but apparently there was
> any change).
Have you read ?glm, specifically this bit:
Details:
For the backgroun
As you suggested I had a further look at the profile by changing default
values of stepsize (I tried to modify the others but apparently there was
any change).
Here they go the scripts I have used:
> dati<-read.table("simone.txt",header=T,sep="\t",as.is=T)
> glm.sat<-glm(sex~twp+hwp+hcp+hnp,binomi
On 13.10.2011 21:46, Ben Bolker wrote:
lincoln hotmail.com> writes:
Hi all,
I have run a (glm) analysis where the dependent variable is the gender
(family=binomial) and the predictors are percentages.
I get a warning saying "fitted probabilities numerically 0 or 1 occurred"
that is indica
lincoln hotmail.com> writes:
>
> Hi all,
>
> I have run a (glm) analysis where the dependent variable is the gender
> (family=binomial) and the predictors are percentages.
> I get a warning saying "fitted probabilities numerically 0 or 1 occurred"
> that is indicating that quasi-separation or s
Hi all,
I have run a (glm) analysis where the dependent variable is the gender
(family=binomial) and the predictors are percentages.
I get a warning saying "fitted probabilities numerically 0 or 1 occurred"
that is indicating that quasi-separation or separation is occurring.
This makes sense given
On Tue, Sep 27, 2011 at 2:59 PM, Patrick Breheny wrote:
> On 09/27/2011 07:53 AM, majesty wrote:
>
>> Dear subscribers,
>>
>> I am looking for a function which would allow me to model the dependent
>> variable as the number of successes in a series of Bernoulli trials. My
>> data
>> looks like thi
On 09/27/2011 07:53 AM, majesty wrote:
Dear subscribers,
I am looking for a function which would allow me to model the dependent
variable as the number of successes in a series of Bernoulli trials. My data
looks like this
ID TRIALS SUCCESSESS INDEP1 INDEP2 INDEP3
1 0
Dear subscribers,
I am looking for a function which would allow me to model the dependent
variable as the number of successes in a series of Bernoulli trials. My data
looks like this
ID TRIALS SUCCESSESS INDEP1 INDEP2 INDEP3
1 00.273 0.055 0.156
2
Thanks a lot sir.
Regards
Sarah
--- On Thu, 5/12/11, Alexander Engelhardt wrote:
From: Alexander Engelhardt
Subject: Re: [R] Binomial
To: "Sarah Sanchez"
Cc: "David Winsemius" , r-help@r-project.org
Date: Thursday, May 12, 2011, 12:53 PM
Am 12.05.2011 13:19, schrieb Sar
ALSE
> sum(x)
[1] 10
You could shorten this to
> sum(runif(20)<0.7)
[1] 12
Which would be the same as
> rbinom(1,20,0.5)
[1] 6
or even
> qbinom(runif(1),20,0.5)
[1] 12
Just play around a little, and learn from the help files:
> ?rbinom
Have fun!
--- On Thu, 5/12/11, David W
s
Sarah
--- On Thu, 5/12/11, David Winsemius wrote:
From: David Winsemius
Subject: Re: [R] Binomial
To: "Alexander Engelhardt"
Cc: r-help@r-project.org, "blutack"
Date: Thursday, May 12, 2011, 11:08 AM
On May 12, 2011, at 5:02 AM, Alexander Engelhardt wrote:
> Am
On May 12, 2011, at 5:02 AM, Alexander Engelhardt wrote:
Am 12.05.2011 10:46, schrieb blutack:
Hi, I need to create a function which generates a Binomial random
number
without using the rbinom function. Do I need to use the choose
function or
am I better just using a sample?
Thanks.
I th
On 12-May-11 09:02:45, Alexander Engelhardt wrote:
> Am 12.05.2011 10:46, schrieb blutack:
>> Hi, I need to create a function which generates a Binomial random
>> number
>> without using the rbinom function. Do I need to use the choose
>> function or
>> am I better just using a sample?
>> Thanks.
>
Am 12.05.2011 10:46, schrieb blutack:
Hi, I need to create a function which generates a Binomial random number
without using the rbinom function. Do I need to use the choose function or
am I better just using a sample?
Thanks.
I think I remember other software who generates binomial data with e
Hi, I need to create a function which generates a Binomial random number
without using the rbinom function. Do I need to use the choose function or
am I better just using a sample?
Thanks.
--
View this message in context:
http://r.789695.n4.nabble.com/Binomial-tp3516778p3516778.html
Sent from th
On Jan 26, 2011, at 8:07 PM, Folkes, Michael wrote:
I'm trying to fathom how to answer two example problems (3.3.2 &
3.3.3) in:
Krishnamoorthy. 2006. "handbook of statistical distributions with
applications"
The first requires calculating single trial probability of success
for a binomia
I'm trying to fathom how to answer two example problems (3.3.2 & 3.3.3) in:
Krishnamoorthy. 2006. "handbook of statistical distributions with applications"
The first requires calculating single trial probability of success for a
binomial distribution when we know:
trial size=20, successes k=4, P(
Perfect!
Thank You!
2010/8/28 Peter Dalgaard
> On 08/28/2010 10:23 PM, tamas barjak wrote:
> > Hello!
> >
> > I need some help.
> > How I know it to draw the formula of the binomial distribution?
> >
> > expr<-expression(P(xi == k) == choose(n, k)* p^k*(1-p)^(n-k)) ---> not
> good
> >
> > on th
On 08/28/2010 10:23 PM, tamas barjak wrote:
> Hello!
>
> I need some help.
> How I know it to draw the formula of the binomial distribution?
>
> expr<-expression(P(xi == k) == choose(n, k)* p^k*(1-p)^(n-k)) ---> not good
>
> on the screen the "choose(n, k)" not the Binomial Formula, but "choose(
try:
?pbinom
--
View this message in context:
http://r.789695.n4.nabble.com/binomial-distribution-tp2398568p2398705.html
Sent from the R help mailing list archive at Nabble.com.
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listin
Hello!
I need some help.
How I know it to draw the formula of the binomial distribution?
expr<-expression(P(xi == k) == choose(n, k)* p^k*(1-p)^(n-k)) ---> not good
on the screen the "choose(n, k)" not the Binomial Formula, but "choose(n,
k)"
Thanx!
[[alternative HTML version deleted]]
On Sep 25, 2009, at 6:29 AM, Ashta wrote:
Dear R-users,
Suppose I have the following sample of data,
0 1 2 4 3
1 2 1 3 1
1 3 3 4 1
0 1 2 1 2
1 4 1 4 2
1 2 2 1 1
The first variable is the response variable where 0 is defective and 1
normal. The other four f
Dear R-users,
Suppose I have the following sample of data,
0 1 2 4 3
1 2 1 3 1
1 3 3 4 1
0 1 2 1 2
1 4 1 4 2
1 2 2 1 1
The first variable is the response variable where 0 is defective and 1
normal. The other four factors( x1,x2,x3,x4) that influence the
Hi All,
Thank you for all your help.
In future I will state if it's homework related.
regards
Brendan
beetle2 wrote:
>
> Hi Guy's
> I was wondering if someone could point me in the right direction.
>
> dbinom(10,1,0.25)
>
> I am using dbinom(10,1,0.25) to calculate the probabilty of 10
beetle2 [Sun, Apr 19, 2009 at 03:01:43AM CEST]:
>
> I'm thinking I will just use:
> results <- rbinom(1000, 10, .25)
> d = sum(results == 0 )
> df = (d/1000)
> df
>
> And do each individually
ok, at least you are trying some things out for yourself. In fact, along
with reading the doc, this is
With due respect, and in all fairness, you should inform your instructor
that you took help from R's mailing list for doing homework.
This mailing list (or any other general mailing list for that matter) is
not for doing your (or anyone else's) homework. If the instructor
allowed that, that is a
I've done some study.
And made a couple of loops to compare the dbinom() and rbinom()
Here are the results:
The instructor only asked for 1000 trials so its not that accurate. but its
close to it.
> for(x in c(1:10))
+ {print(dbinom(x,10,.25)) }
[1] 0.1877117
[1] 0.2815676
[1] 0.2502823
[1] 0.1
I'm thinking I will just use:
results <- rbinom(1000, 10, .25)
d = sum(results == 0 )
df = (d/1000)
df
And do each individually
beetle2 wrote:
>
> Hi Guy's
> I was wondering if someone could point me in the right direction.
>
> dbinom(10,1,0.25)
>
> I am using dbinom(10,1,0.25) to calcula
Sorry guys one quick question
I've graphed the histogram with
hist(rbinom(n = 1000, size = 10, prob = 0.25))
How to I sum the individual values 0 to 12?
regards
Brendan
beetle2 wrote:
>
> Hi Guy's
> I was wondering if someone could point me in the right direction.
>
> dbinom(10,1,0.25)
>
> I
Thank you for your help!
Yes you are right the probabilities are for the values 0 through 12.
I been asked to compare the simulated values to that of dbinom()
once again thanks!
Ranjan Maitra wrote:
>
> This sounds like a potential homework problem. You don't quite need to
> simulate anythin
This sounds like a potential homework problem. You don't quite need to
simulate anything if your question is all you have been asked to do.
dbinom(x = 1:10, size = 10, prob = 0.25)
Perhaps you have been asked to simulate 1000 realizations and compare
the relative frequencies with these probabilit
Not being entirely sure what you mean, I think
rbinom(1000, 10, .25)
may be what you want.
Hi,
Thanks for your reply.
It is close to that but I need to know the probabilty of how many judges
pick a certain brand.
Just say x= 6 judges pick brand A which has P=0.25.
Using R it would be:
> db
beetle2 [Fri, Apr 17, 2009 at 11:28:56PM CEST]:
>
> Hi Guy's
> I was wondering if someone could point me in the right direction.
>
> dbinom(10,1,0.25)
>
> I am using dbinom(10,1,0.25) to calculate the probabilty of 10 judges
> choosing a certain brand x times.
dbinom returns the discrete dens
Hi Guy's
I was wondering if someone could point me in the right direction.
dbinom(10,1,0.25)
I am using dbinom(10,1,0.25) to calculate the probabilty of 10 judges
choosing a certain brand x times.
I was wondering how I would go about simulating 1000 trials of each x value
?
regards
Brendan
-
Gerard M. Keogh justice.ie> writes:
>
>
> Hi everyone,
>
> newbee query!
>
> I've installed R 2.8.0 and tried to run this simple glm -
> x is no of cars in a given year, y is the number voted in an election
> that year while n is the population 18+:
I strongly suspect that you're co
Hi everyone,
newbee query!
I've installed R 2.8.0 and tried to run this simple glm -
x is no of cars in a given year, y is the number voted in an election
that year while n is the population 18+:
votes <- data.frame(x = c(0.62,0.77,0.71,0.74,0.77,0.86,1.13,1.44),
+
On Wed, 10 Sep 2008, Thomas Lumley wrote:
On Wed, 10 Sep 2008, Prof Brian Ripley wrote:
As to why the list of links known by name is as it is, that seems history.
in part the White Book history of S. I've always thought it an error that
'log' was a standard link for binomial, as the range d
; Ben Bolker
Subject: Re: [R] binomial(link="inverse")
On Wed, 10 Sep 2008, Prof Brian Ripley wrote:
>
> As to why the list of links known by name is as it is, that seems
> history. in part the White Book history of S. I've always thought it
an error that 'log'
Thomas Lumley wrote:
> As a side note, in (some versions of) S, due to partial matching,
> binomial("log") is valid -- it just does logistic regression.
>
ouch!
signature.asc
Description: OpenPGP digital signature
__
R-help@r-project.org mailing l
On Wed, 10 Sep 2008, Prof Brian Ripley wrote:
As to why the list of links known by name is as it is, that seems history. in
part the White Book history of S. I've always thought it an error that 'log'
was a standard link for binomial, as the range does not match the
specification of probabil
Prof Brian Ripley wrote:
> This isn't accurate. You are talking about link functions *known by name*.
>
> link: a specification for the model link function. This can be a
> name/expression, a literal character string, a length-one
> character vector or an object of class
This isn't accurate. You are talking about link functions *known by name*.
link: a specification for the model link function. This can be a
name/expression, a literal character string, a length-one
character vector or an object of class '"link-glm"' (provided
it
this may be a better question for r-devel, but ...
Is there a particular reason (and if so, what is it) that
the inverse link is not in the list of allowable link functions
for the binomial family? I initially thought this might
have something to do with the properties of canonical
vs non-ca
Peng Jiang wrote:
> Hi, xiechao
> i don't think that is a R specific problem. you mean u got two random
> variables X,Y and both
> of them binomial distributed and you want to find the distribution of
> a new variable Z = X/Y.
> That is a basic transformation problem. u can start with introducing
Hi, xiechao
i don't think that is a R specific problem. you mean u got two
random variables X,Y and both
of them binomial distributed and you want to find the distribution of
a new variable Z = X/Y.
That is a basic transformation problem. u can start with introducing a
new r.v. namely W, by
Hi all,
I am a biological student and need your help in statistics.
I have two sets of binomial distributed numbers: {a1, a2, ..., an} and {b1,
b2, ..., bn}.
How can I get the distribution of the ratios of the two sets of numbers
{a1/b1, a2/b2, ..., an/bn}? Is there a formula to transform the
di
On Thu, 2007-10-18 at 10:18 -0500, Bret Collier wrote:
> All,
>
> I have been digging around in the help files and found bsamsize in
> Hmisc, but I am wondering if i am using it right.
>
> So, here is the question: given a binomial response (success/failure)
> for 2 groups (treatment/control)
All,
I have been digging around in the help files and found bsamsize in
Hmisc, but I am wondering if i am using it right.
So, here is the question: given a binomial response (success/failure)
for 2 groups (treatment/control) and I want to estimate the necessary
sample size (n) to determine if
64 matches
Mail list logo
