Re: [R] .Internal(La_rs(x, FALSE)) crashes R after long (reproducible) script on windows only

2016-02-23 Thread Anthony Damico
hi, thank you, at the point that the corruption exists, the line `.Internal(La_rs(x,FALSE))` actually breaks without needing `eigen` i have provided a reproducible example but agree it might not be minimal -- i did try removing various sections, each time the bug unfortunately vanished. note the

Re: [R] .Internal(La_rs(x, FALSE)) crashes R after long (reproducible) script on windows only

2016-02-23 Thread Duncan Murdoch
On 23/02/2016 7:49 AM, Anthony Damico wrote: hi, does anybody have a clue why .Internal(La_rs(x,FALSE)) is getting corrupted (actual detonation occurs within La_solve_cmplx within Lapack.c) on windows but not mac/unix? i have provided two (long) scripts that reproduce the problem and a third scr

[R] .Internal(La_rs(x, FALSE)) crashes R after long (reproducible) script on windows only

2016-02-23 Thread Anthony Damico
hi, does anybody have a clue why .Internal(La_rs(x,FALSE)) is getting corrupted (actual detonation occurs within La_solve_cmplx within Lapack.c) on windows but not mac/unix? i have provided two (long) scripts that reproduce the problem and a third script modified to trigger the crash that unfortun

Re: [R] .Internal(filledcontour()) - ancient history or just plain wrong?

2014-06-14 Thread Prof Brian Ripley
On 14/06/2014 10:30, Raphael Päbst wrote: You are right, it was there is no .Internal function 'filledcontour' and changing it to .filled.contour() removed the problem. Just out of curiosity, would the old version with .Internal(filledcontour()) have worked on older R-Versions? Possibly.

Re: [R] .Internal(filledcontour()) - ancient history or just plain wrong?

2014-06-14 Thread Raphael Päbst
You are right, it was   there is no .Internal function 'filledcontour' and changing it to .filled.contour() removed the problem. Just out of curiosity, would the old version with .Internal(filledcontour()) have worked on older R-Versions? Not that I fully understand how .Internal() works and sh

Re: [R] .Internal(filledcontour()) - ancient history or just plain wrong?

2014-06-14 Thread Prof Brian Ripley
On 14/06/2014 10:04, Raphael Päbst wrote: Hello everyone! In my ongoing odyssey through badly dokumented and sparingly commented R-code, I've come across something that baffles me. The following line of code .Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels), col = col))

[R] .Internal(filledcontour()) - ancient history or just plain wrong?

2014-06-14 Thread Raphael Päbst
Hello everyone! In my ongoing odyssey through badly dokumented and sparingly commented R-code, I've come across something that baffles me. The following line of code .Internal(filledcontour(as.double(x), as.double(y), z, as.double(levels), col = col)) not surprisingly results in an error, telling

Re: [R] internal error -3 in R_decompress1

2013-08-13 Thread Prof Brian Ripley
On 13/08/2013 18:47, Jannis wrote: Dear r users, what could cause such an error: "internal error -3 in R_decompress1" unfortunately the error kills all my usual error catching mechanisms an appears on a remote cluster so I can not really tell you which command etc is causing it. It is a co

[R] internal error -3 in R_decompress1

2013-08-13 Thread Jannis
Dear r users, what could cause such an error: "internal error -3 in R_decompress1" unfortunately the error kills all my usual error catching mechanisms an appears on a remote cluster so I can not really tell you which command etc is causing it. Thanks for any hints on where to dig for th

[R] internal validation_logistic regression results

2012-12-03 Thread martina CHITTANI
Hi,I'm developing a case-control study on genotyping data.I have fitted a logistic regression with covariates on this dataset, to pinpoint association between some SNPs and response to a drug treatment. I do not have a sample for confirmation of results, so I would perform a internal validati

[R] internal cluster quality indexes

2012-11-19 Thread eliza botto
Dear useRs, I wanted to know something about the Index.G2 and Index.G3 which Calculate G2 and G2 internal cluster quality indexes. i tried to find material from internet but it seems that the file have been removed. Is it good to have higher values of these indexes or lower? thanks in advan

Re: [R] internal error -3 in R_decompress1

2012-07-25 Thread Jeff Newmiller
try options (error= recover) and examine the stack frames. --- Jeff NewmillerThe . . Go Live... DCN:Basics: ##.#. ##.#. Live Go...

[R] internal error -3 in R_decompress1

2012-07-25 Thread Jannis
Dear R community, i ran into a quite cryptic error message while running some non interactive calculations. The error message reads: Error in formals(FilterTSeriesSSA) : internal error -3 in R_decompress1 This FilterTseriesSSA is a function I wrote. Where could such an error originate from?

Re: [R] .Internal(download())

2010-12-01 Thread Duncan Murdoch
On 01/12/2010 5:12 AM, Koray Kaya wrote: Hello, I tried to use GEOQuery package of BioC. It does not download GSE. I investigated problem, understood that the problem was about internal function "download". Reccomendations about it mostly suggest switching any proxy off in R. I did, and nothing

[R] .Internal(download())

2010-12-01 Thread Koray Kaya
Hello, I tried to use GEOQuery package of BioC. It does not download GSE. I investigated problem, understood that the problem was about internal function "download". Reccomendations about it mostly suggest switching any proxy off in R. I did, and nothing changed. I use Ubuntu Lucid 64 bit Thank

[R] .Internal(download())

2010-12-01 Thread Koray Kaya
Hello, I tried to use GEOQuery package of BioC. It does not download GSE. I investigated problem, understood that the problem was about internal function "download". Reccomendations about it mostly suggest switching any proxy off in R. I did, and nothing changed. I use Ubuntu Lucid 64 bit Tha

[R] R Internal Web Server Loopback Interface Limit

2010-04-12 Thread D. Dashcle
Is there a setting or easy way I can remove the code that makes R only listen for web traffic on 127.0.0.1? I've noticed it seems to reject traffic to both the regular help files (i.e. what starts up when I do "?function"), as well as if I try to connect to pages I've made for the R.rsp package

Re: [R] .Internal

2009-03-23 Thread Berwin A Turlach
G'day Kevin, On Mon, 23 Mar 2009 18:48:16 -0400 wrote: > Sorry to be so dense but the article that you suggest does not give > any information on how the arguments are packed up. I look at the > call: > > val <- .Internal(fmin(function(arg) -f(arg, ...), lower, upper, tol)) > > and then with t

Re: [R] .Internal

2009-03-23 Thread rkevinburton
Sorry to be so dense but the article that you suggest does not give any information on how the arguments are packed up. I look at the call: val <- .Internal(fmin(function(arg) -f(arg, ...), lower, upper, tol)) and then with the help of this article I find do_fmin in optimize.c: SEXP attribute_h

Re: [R] .Internal

2009-03-18 Thread Berwin A Turlach
G'day Kevin, On Wed, 18 Mar 2009 21:46:51 -0700 wrote: > I was trying to find source for optimize and I ran across > > function (f, interval, ..., lower = min(interval), upper = > max(interval), maximum = FALSE, tol = .Machine$double.eps^0.25) > { > if (maximum) { > val <- .Interna

[R] .Internal

2009-03-18 Thread rkevinburton
I was trying to find source for optimize and I ran across function (f, interval, ..., lower = min(interval), upper = max(interval), maximum = FALSE, tol = .Machine$double.eps^0.25) { if (maximum) { val <- .Internal(fmin(function(arg) -f(arg, ...), lower, upper, tol))

Re: [R] Internal Memory Limit in R

2008-12-27 Thread Prof Brian Ripley
Once again you are asking questions that the help system can tell you the answer to. Try help.search("memory limit") and also learn about RSiteSearch. On Sat, 27 Dec 2008, Gundala Viswanath wrote: Hi all, What's the limit of memory size that can be handled by R? The reason I ask this is b

[R] Internal Memory Limit in R

2008-12-27 Thread Gundala Viswanath
Hi all, What's the limit of memory size that can be handled by R? The reason I ask this is because I want to perform tag counts using 'table' function. And there are around 4~5GB of such tags to be counted. I wonder if R can handle such large datasets. - Gundala Viswanath Jakarta - Indonesia _

Re: [R] Internal and displayed precision of numbers

2008-11-05 Thread Uwe Ligges
Oliver Bandel wrote: Hello, many thanks! BTW: I read your book. :) It's quite good. Thank you. But I didn'tfoud the precision-stuff in it. Adding information about this topic in the next edition might be a good idea. These numeric things are an interesting and important topic, of cours

Re: [R] Internal and displayed precision of numbers

2008-11-05 Thread Oliver Bandel
Hello, many thanks! BTW: I read your book. :) It's quite good. But I didn'tfoud the precision-stuff in it. Adding information about this topic in the next edition might be a good idea. Nevertheless it explains crucial points very good, and from that starting point, it's easier to understand the

Re: [R] Internal and displayed precision of numbers

2008-11-05 Thread John Kane
sprintf() for displayed numbers perhaps. --- On Wed, 11/5/08, Oliver Bandel <[EMAIL PROTECTED]> wrote: > From: Oliver Bandel <[EMAIL PROTECTED]> > Subject: [R] Internal and displayed precision of numbers > To: r-help@r-project.org > Received: Wednesday, November

Re: [R] Internal and displayed precision of numbers

2008-11-05 Thread Uwe Ligges
Oliver Bandel wrote: Hello, can the displayed and/or used precision of numbers be configured? And if... how? See ?.Machine for the internally used precision. See ?options and ?format/?formatC/?print for the printed precision. Uwe Ligges Ciao, Oliver __

[R] Internal and displayed precision of numbers

2008-11-05 Thread Oliver Bandel
Hello, can the displayed and/or used precision of numbers be configured? And if... how? Ciao, Oliver __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting

Re: [R] Internal functions

2007-12-07 Thread Charles C. Berry
See ?body HTH, Chuck On Fri, 7 Dec 2007, piotr iksiński wrote: I've complex problem and this's idealization of it: v=1:10 fx<-function(x){ v[x]=v[x]*2} fy<-function(y){ fx(y)} for(i in 1:10){ fy(i)} How to modife expresion (and only that): {v[x]=v[x]^2} to achive the redefin

[R] Internal functions

2007-12-07 Thread piotr iksiński
I've complex problem and this's idealization of it: v=1:10 fx<-function(x){ v[x]=v[x]*2} fy<-function(y){ fx(y)} for(i in 1:10){ fy(i)} How to modife expresion (and only that): {v[x]=v[x]^2} to achive the redefinetion of the values of vector v, the result should be: v=(1:10)*2. I think, that