Dear all,
how can I install the Windows/R package
http://www.ssg.uab.edu/bhglm/files/BhGLM_1.0.zip
under Linux/R?
There is no CRAN package.
Simply, applying gunzip, tar -czvf, R CMD INSTALL *.tar.gz did not work.
Thanks in advance,
Will
_
Dear all,
thanks for your help which solves the problem!
However, I would like to remark that I find the R CMD BATCH command options
inconsistent and incomplete, since the .RData path and file name is not
(always) the same as the R script and there is no easy control over the path
Dear all,
I would like to fully document an analysis in R including script, output and
workspace data. To do this I currently run under Linux
$ R CMD BATCH myscript.R
This command combines and saves only the script commands and the output
./myscript.Rout. To save the workspace
Hi,
why does predict.lme() give missings in the "predict.Subject" column for
Subjects which are not in the original training set?
library(nlme)
example(predict.lme)
## c.f. Subject=="F30" has missing values.
How can I predict/impute values for such "new" Subjects based on the fitted
model?
Th
Dear R users,
I am wondering about the following results:
> p.adjust(c(0.05,0.05,0.05),"fdr")
[1] 0.05 0.05 0.05
> p.adjust(c(0.05,0.04,0.03),"fdr")
[1] 0.05 0.05 0.05
Why does p.adjust(..., "fdr") not adjust p-values, if they are constant?
Does somebody have an explanation or can point to a ref
Dear all,
how do I get the residuals from a lme() output objects which are adjusted for
fixed AND (!) random effects?
I tried residuals(), but it seems they just give me the residuals adjusted for
the fixed effects of the regression model.
The model I use is:
lme.out <- lme(data=MyDataInLongFo
Dear all,
how can I use R on a 64-bit Windows Server 2003 machine (24GB RAM) with more
than 3GB of working memory and make full use of it.
I started R --max-mem-size=3G since I got the warning that larger values are
too large and ignored.
In R I got:
> memory.size(max=FALSE)
[1] 10.5
> memory
Dear all,
how can I set the resolution of embedded plots in PDF using pdf() or
CairoPDF() to a value of e.g. 600 dpi to meet journal requirements?
Thanks in advance,
Will
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-
On 2010-05-20 08:52, Shi, Tao wrote:
Will,
I'm wondering if you have any
insights after looking at the cor.test source code. It seems to be fine to me, as the p
value is either calculated by "your first method" or a
.C code.
...Tao
Dear Tao,
I think the described problem of p-values < 2.
Dear all,
thanks for your feedback so far. With the help of a colleague I think I
found the solution to my problem:
> pt(10,100,lower=FALSE)
[1] 4.950844e-17
IS *NOT* EQUAL TO
> 1-pt(10,100,lower=TRUE)
[1] 0
This means that R is capable of providing p-values < 2.2e-16, however,
if the valu
Dear all,
how can I check the source code for a hidden function like cor.test()?
At the moment I get ...
> cor.test
function (x, ...)
UseMethod("cor.test")
Thanks in advance,
Will
__
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https://stat.ethz.ch/mailman/li
Dear all,
how can I get the exact p-value of a statistical test like cor.test() if
the p-value is below the default machine epsilon value of
.Machine$double.eps = 2.220446e-16?
At the moment smaller p-values are reported as "p-value < 2.2e-16".
.Machine$double.eps <- 1E-100 does not solve th
>Exactly the same question was asked, in exactly the same words, 5 days ago:
>https://stat.ethz.ch/pipermail/r-help/2010-April/235337.html
Dear all,
sorry for reposting. I thought my first mail had been bounced off since I could
not find it online and no answers on my email account. Problem sol
Dear all,
just a stupid R question, since the results puzzle me a bit:
> sum(c(NA,NA), na.rm=TRUE)
[1] 0
> NA + NA
[1] NA
> NA + 1
[1] NA
>
Why does sum(c(NA,NA), na.rm=TRUE) return 0 and not NA?
Thanks in advance,
Will
__
R-help@r-project.org
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