[R] library(convert)

2008-02-18 Thread Schmitt, Corinna
Hallo, I am running R-2.6. on Windows. I have a code which uses library(convert). Can anyone tell me which package I need to install to run this code. Everytime I receive the error message library (convert) not found. Thanks, Corinna __ R-help@r

[R] WG: Tinn-R not working well with latest R

2008-02-11 Thread Schmitt, Corinna
I am in R command window and just make Crt+V. Corinna -Ursprüngliche Nachricht- Von: Farrel Buchinsky [mailto:[EMAIL PROTECTED] Gesendet: Mo 11.02.2008 21:16 An: Schmitt, Corinna Betreff: Re: Tinn-R not working well with latest R I can easily get R to open without an error. I

[R] Tinn-R not working well with latest R

2008-02-11 Thread Schmitt, Corinna
Hallo, I had the same problems before. I think the best solution is that you just copy the needed codepart out of Tinn-R with Ctr+C. Then open R directly from your desktop NOT from Tinn-R. Than paste in the command. you can still make changes in the command when you have not pressed enter by

[R] Interpretation of log odds

2008-02-11 Thread Schmitt, Corinna
Hallo, > fit12<-lmFit(qrg[,1:2]) > t12<-toptable(fit12,adjust="fdr",number=15000,genelist=qrg$genes[,1]) > t12 ID logFC t P.Value adj.P.ValB 1560orf6.2714 -5,95911144 -7,5045373620,0616459272

[R] Difference between P.Value and adj.P.Value

2008-02-11 Thread Schmitt, Corinna
Hallo, > fit12<-lmFit(qrg[,1:2]) > t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1]) > t12 ID logFC t P.Value adj.P.ValB 522PLAU_OP -6.836144 -8.420414 5.589416e-05 0.01212520 2.054965 1555 CD44_WIZ -6.569622 -8.227938 6.510169e-05 0.012

Re: [R] store variable as tab-del. txt-file

2008-01-24 Thread Schmitt, Corinna
Hallo Julien, thanks for the hint. It works now. Corinna -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Julien Barnier Sent: Thursday, January 24, 2008 11:08 AM To: [EMAIL PROTECTED] Subject: Re: [R] store variable as tab-del. txt-file Hi, > Now

[R] store variable as tab-del. txt-file

2008-01-24 Thread Schmitt, Corinna
Hallo, how can I store a variable as a tab-delimited txt-file? I crated a variable with the following commands: > fit12<-lmFit(qrg[,1:2]) > t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1]) > t12 ID logFC t P.Value adj.P.ValB 522PLAU_OP -6

[R] features boxplot

2008-01-24 Thread Schmitt, Corinna
Hallo, I just made a boxplot with the following command: boxplot(vsnrg$M~col(vsnrg$M)) When I now look at the plot. On the x-axis I just find numbers 1-6 because I have 6 datasets plotted. Now I want to add there the corresponding names which can be found in colnames(qrg). How can I realize this

[R] Chanching a undirected graph into directed graph

2007-11-08 Thread Schmitt, Corinna
Hallo, I just created a graph with myUndirectedGraph = randomEGraph(as.character(1:50), edges = 50) The result is now an undirected graph. How can I change it into a directed one with random directed edges? Thanks, Corinna [[alternative HTML version deleted]] _

[R] loading installes package including all needed subpackages

2007-11-02 Thread Schmitt, Corinna
Hallo, I just installed all needed packages for my project on my PC. But I cannot load all at one time. I now want to load limma. How can I realize the following plan: I want to install for example limma inclusive all needed other sub packages (add-on). Can anyone tell me the corresponding com

[R] Updating R-Software without complete new installation

2007-10-16 Thread Schmitt, Corinna
Hallo, as I see there is a new version for R available. Can anyone tell me how I can update my version 2.5.0 under Windows? The last times I just uninstalled the old version and installed the new one. Afterwards I had to install also all needed packages again. All in all it cost me half a day unti