I would go with unlist on x,single bracket subsetted on f
x <- list(`1` = c(7, 13, 1, 4, 10),
`2` = c(2, 5, 14, 8, 11),
`3` = c(6, 9, 15, 12, 3))
f <- factor(rep(1:3,5))
unlist(x[f])
Yes, unsplit() it is. I was messing around with ave() (which can be hammered
into submiss
Its where n.per.grp is first calculated. I rounded. Gosh do I feel stupid.
Thanks to all who weighed in.
Best Regards,
Grant Izmirlian
From: Duncan Murdoch
Sent: Thursday, August 15, 2024 2:59 PM
To: Izmirlian, Grant (NIH/NCI) [E] ;
r-help@r-project.org
paste(rep("0", delta), collapse="")
z%,%x
}
if(length(x)==1) ans <- do.one(x,B)
if(length(x)>1) ans <- sapply(x, FUN=do.one, B=B)
ans
}
library(lme4)
rho.ICC <- 0.5
s2.b <- 0.5*rho.ICC/(1-rho.ICC)
s2.e <- 0.5
delta <- 0.27
n.per.
\n<>\n\n \n<<
This is very weird. I was running a swarm job on the cluster and it bombed
only for n.per.grp=108, not for the other values. Even though
n.per.grp*n.tt is 540, so that the length of the call to 'rep'
should be 1080, I'm getting a vector of length 1078.
n.per.grp <- 108
n.tt <-
ite a vectorization of the above that will work given a vector of 'p'
cumulative probabilities:
qtl <-
function(p, x, w)
{
if(length(p)==1) ans <- qtl.one(p, x, w)
if(length(p) >1)
ans <- sapply(p, FUN=qtl.one, x=x,w=w)
ans
}
___
M1, linux ARM64, linux x86, Windows 64,
and it works everywhere except
Parallels Windows 64 on ARM M1.
R version 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
best regards
Wite
--no-test-load and the non-functional package
> will still be installed so you can inspect it.
>
> Cheers,
> Simon
>
> PS: please don't cross-post
>
>
> > On Dec 16, 2022, at 7:01 AM, Witold E Wolski wrote:
> >
> > I am getting a package build error, a
I am getting a package build error, and can not figure out the problem.
The error is
"
ERROR: lazy loading failed for package 'prolfqua'
* removing 'C:/Users/
"
However since R CMD build removes the temp directory and does not give
any other errors how can I find out what the build problem is?
Is
Dear all,
I need to extract peptides from a long list of indels of mouse for neoantigen
analysis. Does anyone know a tool that will do it?
Thanks,
Anna
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Hi Eric,
Thanks for your quick response. It works.
Have a nice weekend!
Aiguo
From: Eric Berger
Date: Friday, February 18, 2022 at 3:35 PM
To: "Li, Aiguo (NIH/NCI) [E]"
Cc: "r-help@r-project.org"
Subject: [EXTERNAL] Re: [R] A question of data frame filter based on
Dear Duncan,
Thank you. Indeed I did had the R_LIBS_USER env. variable defined.
Best regards
Witold
On Mon, 7 Jun 2021 at 17:48, Duncan Murdoch wrote:
>
> On 07/06/2021 10:37 a.m., Witold E Wolski wrote:
> > Hello,
> >
> > I just installed R 4.1 and now trying to upda
Hello,
I just installed R 4.1 and now trying to update install some packages.
R version 4.1.0 (2021-05-18) -- "Camp Pontanezen"
Copyright (C) 2021 The R Foundation for Statistical Computing
But when installing packages I read:
Installing packages into ‘C:/Users/wolski/Documents/R/win-library/4.
I am trying to understand how loops in operate. I have a simple dataframe xx
which is as follows
COMPANY_NUMBER NUMBER_OF_YEARS
#0070837 3
#0070837 3
#0070837 3
1000403 4
1000403
_OF_SHARES[i] = 100/is.na(CLOSE_SHARE_PRICE[i])
>}
> }
>
>
> Hope this helps,
>
> Rui Barradas
>
> Às 13:51 de 13/04/21, e-mail ma015k3113 via R-help escreveu:
> > Dear All,I have a dataframe with 4 variables and I am trying to calculate
> > how many shares can be purchased
>
>
> Jim Holtman
> Data Munger Guru
>
> What is the problem that you are trying to solve?
> Tell me what you want to do, not how you want to do it.
>
>
> On Tue, Apr 13, 2021 at 5:51 AM e-mail ma015k3113 via R-help <
>
Dear All,I have a dataframe with 4 variables and I am trying to calculate how
many shares can be purchased with £100 in the first year when the company was
listed
The data looks like:
COMPANY_NUMBER YEAR_END_DATE CLOSE_SHARE_PRICE NUMBER_OF_SHARES
2270530/09/200
22705 CARDIFF PROPERTY PUBLIC LIMITED COMPANY (THE)Egham
> 30/09/2007 9.65 NA
> 4 22705 CARDIFF PROPERTY PUBLIC LIMITED COMPANY (THE)Egham
> 30/09/2008 6.55 -3.10
>
> Good luck.
>
> David Stevens
>
> On 3/31/202
Dear All, I have a data frame which is structured as follows:
COMPANY_NUMBER COMPANY_NAMECITYYEAR_END_DATE CLOSE_SHARE_PRICE
22705 CARDIFF PROPERTY PUBLIC LIMITED COMPANY (THE)Egham
30/09/2005 NA
22705 CARDIFF PROPERTY PUBLIC LIMITED COMPANY (THE)Egham
I have a data frame "PLC" which has two variables Year_END_Date EPS
YEAR_END_Date EPS
2010-09-10.10
2009-08-10.20
When I tried to convert Year_END_Date to character format using
select(PLC, format(Year_END_Date,format = "%B %d, %Y"), EPS) I get an error
Error: Can't subset
You th' barradas!!!
-Original Message-
From: Rui Barradas
Sent: Thursday, February 18, 2021 2:10 PM
To: Izmirlian, Grant (NIH/NCI) [E] ; r-help@r-project.org
Subject: Re: [R] New line in caption with math symbols embedded in expression
(paste(
Hello,
First of all the plotma
This is beautiful. Thanks!
G
-Original Message-
From: Rui Barradas
Sent: Thursday, February 18, 2021 2:10 PM
To: Izmirlian, Grant (NIH/NCI) [E] ; r-help@r-project.org
Subject: Re: [R] New line in caption with math symbols embedded in expression
(paste(
Hello,
First of all the
18, 2021 1:47 PM
To: Izmirlian, Grant (NIH/NCI) [E]
Cc: r-help@r-project.org
Subject: Re: [R] New line in caption with math symbols embedded in expression
(paste(
See also this:
https://cran.r-project.org/web/packages/latex2exp/vignettes/using-latex2exp.html
Bert
On Thu, Feb 18, 2021 at 10:42
## I am using ggplot and trying to produce a caption containing math symbols. I
need to
## add a second line. I did a fair amount of googling for answers. This one
seemed like
## it would answer my question as it is nearly exactly my problem, except there
is only
## one argument to the paste fun
Hello,
I'm having difficulty doing the following exercise.
Can you please provide the code and some written explanation?
Thank you in advance,
Zyra
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Dear all,
One of our PIs has a targeted sequencing dataset generated a while ago. He is
interested in finding out VAF of a group of genes. This is the first dataset
of this types we have. I would be appreciative for any suggestions on
pipelines for analyzing this type of data.
Thanks
Anna
Hi -- there are lots of replies --I have not read them all, if someone else
suggested this, sorry for duplication. This is similar to the suggestion using
mapply, but not specific to matrices. In fact it's a kludge that applies to
many settings. You 'sapply' over the index 1:2, and pass a, b as
Bert, thanks for responding to my email. I do realise that newbie's like my can
expect curt answers but not to worry. I am definitely learning 'R' and what I
posted are also statements from R. The statements run perfectly well but don't
do what I want them to do. My mistake I have posted sample
Dear All, I have a dataframe which has a few thousand companies with unique
company numbers and names and each company has data for several years and each
year is stored in a separate row.
I want to get a total for the number of years of data for each company. When I
loop through the data with
evert to rstan 2.19.3."
Thanks
Witek
On Mon, 13 Jul 2020 at 15:41, Witold E Wolski wrote:
>
> Hello,
>
> I upgraded today to R4.0.2 from 3.6.3 on my Windows machine (actually
> 2 of them - first desktop and then laptop just to verify the problem)
> and on both of them I am
Hello,
I upgraded today to R4.0.2 from 3.6.3 on my Windows machine (actually
2 of them - first desktop and then laptop just to verify the problem)
and on both of them I am getting the following error when running the
brms::brm function example code.
```
> bprior1 <- prior(student_t(5,0,10), class
unction which calls graphics::smoothScatter
I found this e-mail on the r-devel list where this problem is also reported.
https://stat.ethz.ch/pipermail/r-devel/2015-February/070671.html
So I could add KernSmooth to Suggest in the DESCRIPTION but I have a
few questions:
(and I am citing from the e-ma
Hello,
I would like to decompose a string i.e.
"a - b"
or "a +b"
into an array or list
["a","-","b"]
Since R knows how to parse expressions these type of expressions I
would like to reuse some existing functions and not to use gsub or
strsplit etc.
Thank you
Witek
--
Witold Eryk Wolski
gher power with n=2. (Also, anything with single-digit degrees of
> freedom for variance is probably expecting rather much regarding to Gaussian
> distribution of your data.)
>
> -pd
>
> > On 4 Oct 2019, at 14:30 , Witold E Wolski wrote:
> >
> > Hi,
Hi,
power.t.test works for some range of input parameters but fails otherwise.
> power.t.test(delta = 0.5849625, sd=0.1, power=0.8, sig.level=0.05)$n
[1] 1.971668
> power.t.test(delta = 0.5849625, sd=0.05, power=0.8, sig.level=0.05)$n
[1] 1.620328
> power.t.test(delta = 0.5849625, sd=0.01, power=
p@r-project.org mailto:r-help@r-project.org > wrote:
>
> > > > On Aug 5, 2019, at 7:03 AM, e-mail ma015k3113 via
> R-help < r-help@r-project.org mailto:r-help@r-project.org > wrote:
> > >
> > > Dear All, can anyone point me towards informatio
Dear Marc,
Thanks-much appreciated
Kind regards
Ahson
> On 05 August 2019 at 12:54 Marc Schwartz wrote:
>
>
>
> > On Aug 5, 2019, at 7:03 AM, e-mail ma015k3113 via R-help
> > wrote:
> >
> > Dear All, can anyone point me towards information for connecti
Dear All, can anyone point me towards information for connecting to a Oracle
instance via DSN. I have already established a ODBC connection.
Sorry if this is very elementary-I am just getting started with R after using
SAS for almost 2 decades.
Kind regards
Ahson
___
I am looking for a function to compute contrasts with a interface
similar to that of
lmerTest::contest
multcomp::glht
i.e. taking the model and a contrast vector or matrix as an argument,
but for linear models, and without the multiple testing adjusted made
by multcomp::glht.
Thank you
--
Wit
lme4 has a function isSingular to check if the fitted model is Singular,
Although lm has the parameter singular.ok = TRUE by defualt, I could
not find a function to check if the fitted model is singular.
What would be the correct way to implement such a function for and lm object?
Check if df.res
Frank
Frank E Harrell Jr Professor School of Medicine
Department of Biostatistics Vanderbilt University
From: Graeme Davidson
Sent: Sunday, March 24, 2019 04:42
To: Harrell, Frank E
Cc: r-help@r-projec
*Regression Modeling Strategies Short Course 2019*
Frank E. Harrell, Jr., Ph.D., Professor
Department of Biostatistics, Vanderbilt University School of Medicine
fharrell.com @f2harrell
*May 14-17, 2019* With Optional R Workshop May 13
9:00am - 4:00pm
Alumni Hall
Vanderbilt University
Statements like c(rbind(x, xx+yy), max(t)) and rep(0,length(df$b[1])) don't
make any sense. You're example will be easier to understand if you show us the
nrow(df) ==3
case. Thanks
Grant Izmirlian, Ph.D.
Mathematical Statistician
izmir...@mail.nih.gov
Delivery Address:
9609 Medical Center Dr,
logical indexing requires the logical index to be of the same length as the
vector being indexed. If it is not, then the index
is wrapped to be of sufficient length. The result on line 3 is
y[c(TRUE, TRUE, FALSE, TRUE)] where the last TRUE was
originally the first component of !is.na(y[1:3])
Gra
on 4.1-1 (2018-01-03)) * describe: quit rounding values when =
20 distinct values no matter how far apart any two values are spaced.https ...
Frank E Harrell Jr Professor School of Medicine
Department of Biostatistics Vand
Hello,
I am just not sure what the predict.RandomForest function is doing...
I confused.
I would expect the predictions for these 2 function calls to predict the same:
```{r}
diachp.rf <- randomForest(quality~.,data=data,ntree=50, importance=TRUE)
ypred_oob <- predict(diachp.rf)
dataX <- data %>
Hello,
Is there an R-package which implements visualizations of estimated
coefficients and the data for lmer models similar to those shown here:
http://genomicsclass.github.io/book/pages/interactions_and_contrasts.html
in sections:
Examining the estimated coefficients
(ideally with ggplot)
???
_1.5
[33] scales_0.5.0 rvest_0.3.2 assertthat_0.2.0 mnormt_1.5-5
[37] colorspace_1.3-2 stringi_1.2.3lazyeval_0.2.1 munsell_0.5.0
[41] broom_0.4.4 crayon_1.3.4
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li Ka Shing Knowledge Institute of St. Michael
home/steve/src/R/R-3.5.0/src/main'
Makefile:135: recipe for target 'R' failed
How does one set the -fPIC flag?
I have never had trouble compiling under Mint, which is based on
Ubuntu.
Thanks!
Steve
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHR
;- do.call(rbind, lapply(names(x), function(z)
ata.frame(type=z, x[[z]])))
#Error in ata.frame(type = z, dat[[z]]) : still cannot find function
"ata.frame"?
*William H. Poling, Ph.D.*
*From:* R-help [mailto:r-help-boun...@r-project.org] *On Behalf Of
*Huzefa Khalil
*Sent:* Wednesday,
4),
B = data.frame(x = 5:6, y = 7:8)
)
dplyr::bind_rows(l, .id = "type")
#> type x y
#> 1A 1 3
#> 2A 2 4
#> 3B 5 7
#> 4B 6 8
This also has the advantage of returning a data frame when the inputs
are data frames.
Hadley
I _clearly_ need to
p
and David Carlson is beautifully elegant.
Thanks again,
Kevin
-Original Message-
From: R-help On Behalf Of David L Carlson
Sent: Wednesday, May 2, 2018 3:51 PM
To: William Dunlap ; Kevin E. Thorpe
Cc: r-help mailing list
Subject: Re: [R] Converting a list to a data frame
Or add th
nd'ed together and the element name becomes a new
variable. For example, I would like to turn the list above into a data
frame that looks like this:
data.frame(type=c("A","A","B","B"),x=c(1:2,5:6),y=c(3:4,7:8))
Appreciate any pointers.
Kevin
--
Kevi
LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.5.0 tools_3.5.0tcltk_3.5.0
--
Kevin E. Thorpe
Head of Biostatistic
virus running).
Thanks all for the advice!
Paul
-Original Message-
From: Paul Lantos
Sent: Tuesday, March 27, 2018 8:35 PM
To: Kevin E. Thorpe ; Jeff Newmiller
Cc: r-help@r-project.org
Subject: RE: [R] unable to move temporary installation of package
Thanks, Kevin. I have done that but no
Health Institute
_
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m
an_listinfo_r-2Dhel
Thanks Paul. Appreciate the help. I'll give this a shot.
Ryan James
D: 713.395.1794
M: 214.843.7301
-Original Message-
From: Paul Smith [mailto:phh...@gmail.com]
Sent: Thursday, February 15, 2018 7:12 AM
To: Ryan James/E&P North America Business Division/SKI
Cc: r-help@r-pr
3.4.3 nnet_7.3-12 data.table_1.10.4-3
[28] foreign_0.8-69 multcomp_1.4-8 TH.data_1.0-8
[31] latticeExtra_0.6-28 magrittr_1.5codetools_0.2-15
[34] MASS_7.3-48 scales_0.5.0backports_1.1.2
[37] htmltools_0.3.6 splines_3.4.3 colorspace_1.3-2
[40] quantreg_5.34
I have a set of data, the production of oil from a well. And an equation to
predict that forecast.
The equation requires 5 input variables which are real numbers with upper and
lower bounds, 1 input variable which must be an integer and 1 input variable
which can be 1 of 2 string variables.
Your messages about masking come from attaching your data set to the R session.
In general, that is bad practice as it leads to confusing code. It is typically
better to use the “data” argument in things like lm() to accomplish this task.
As near as I can tell, your second set of predictions is
Your dates have an incomplete year information with 34. R assumes that 00-68
are 2000 to 2068 and 69 to 99 are 1969 to 1999. See ?strptime and the details
for %y.
You can either append “19” to the start of your year variable to make it
completely express the year or check if the date is in the
pspline(OPTION), nonlin
1747.1295 3.05 <0.0002> Iterations: 8 outer, 19
Newton-Raphson> Theta= 0.991 > Degrees of freedom for terms= 4 >
Likelihood ratio test=2136 on 4.05 df, p=0 n= 3390429 > *
Thanks,
KS
--
Kevin E. Thorpe
Head of Biostatistics, Appli
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
---
This email has been checked for viruses by AVG.
http://www.avg.com
--
Kevin E. Thorpe
Head of Biostat
Barry,
This is mostly a mailing list about R - you have have more luck with
statistical questions on www.stat.stackexchange.com.
That said - the editor is wrong. The limitations of trees that random forests
“solves” is overfitting. The mechanism by which a random forest classifier is
built i
Christofer,
This SO thread may be helpful:
http://stackoverflow.com/questions/33634871/installing-rgl-package-in-r-mac-osx-el-captian-fixed
On Apr 12, 2017, at 12:22 PM, Christofer Bogaso
mailto:bogaso.christo...@gmail.com>> wrote:
Hi again,
I could not load the 'rgl' package with below Erro
Bruce,
`sample` doesn’t appear to be an R package. `resample` installed for me.
`apply` and `sapply` aren’t packages either.
`sample`, `apply` and `sapply` are all functions, however.
> On Apr 10, 2017, at 12:08 PM, BR_email wrote:
>
> Hi Rers:
> Is there anything I can check for as to wh
I am wondering if there is a way to undo the results of table().
For example if you had a table that looked like the result of table(x, y) or
table(x, y, z) is there a simple/elegant way to reverse the process to get the
"original" x, y and z vectors?
Thanks,
Kevin
--
Kevin E. T
correctly.
Kevin
On 02/07/2017 02:23 PM, Kevin E. Thorpe wrote:
I am re-running some logistic regression analyses using lrm from the rms
package but latex(anova(...)) appears to be broken on my system.
Here is some anova() output followed by the latex() error for two models
since the error c
s_1.0.5 htmltools_0.3.5
[34] splines_3.2.3 assertthat_0.1 colorspace_1.3-2
[37] quantreg_5.29 sandwich_2.3-4 stringi_1.1.2
[40] acepack_1.4.1 lazyeval_0.2.0 munsell_0.4.3
[43] zoo_1.7-14
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li
Dear all,
I am new to r script and run into some difficulty with this simple task.
Here is my data: I need to find out the number of mutual intersected elements
as shown below
data
pathway1 A B C D E
pathway2 A
To which document
"See section 'Good practice' in '?data'."
refers too?
Found the following calls to data() loading into the global environment:
File 'bibliospec/R/annotateClass.R':
data("AminoAcids")
See section 'Good practice' in '?data'.
Thanks
--
Witold Eryk Wolski
___
I am wrting a package and would like to be able to export it to access it with:
packagename::dataset
This is how my roxygen doc for the data object looks like:
#' Data frame with amino acid masses
#'
#' @name AminoAcids
#' @docType data
#' @keywords data
#' @export
NULL
It does end up in the nam
2 3
8 2 8 3 3
Obviously, for 2 elements the simple rbind works but I would like a
general solution for arbitrary length lists. Hopefully that is clear.
Kevin
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li Ka Shing Knowledge Institute of St. Michael&#
Is there a build in function, which creates n suffixes of length 1:n
from string of length n?
e.g given abcd
produces
"a"
"ab"
"abc"
FAST.
equally nice to have would be:
e.g.
given c("a", "b", "c")
produces
"a"
"a","b"
"a","b","c"
Thank you
Witold
--
Witold Eryk Wolski
___
CLC_TIME=English_Canada.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Formula_1.2-1 survival_2.39-4 lattice_0.20-33
loaded via a namespace (and not attached):
[1] Matrix_1.2-6 tools_3.3.1 gtabl
Is there a mailing list for Rstudio related questions? I searched the
web but did not find one.
Thank you
--
Witold Eryk Wolski
__
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do
I would like to document function arguments in R reference classes and
I do not know how.
I know that methods description can be provided by adding
a string below the function declaration. But how to document the
function arguments in similar fashion like the arguments of R
functions (which can be
Breathed in his "Bloom County" comic strip )
>
>
> On Fri, Jul 1, 2016 at 7:40 AM, Witold E Wolski wrote:
>> Hi William,
>>
>> I tested plyrs dlply function, and it seems to have have an O(N*
>> log(R)) complexity (tested for R=N) so I do not know if N i
variable and use mapply on the resulting lists.
>
> The plyr and dplyr packages were developed to deal with this
> sort of problem. Check them out.
>
>
> Bill Dunlap
> TIBCO Software
> wdunlap tibco.com
>
> On Wed, Jun 29, 2016 at 6:21 AM, Witold E Wolski wrote:
>
w(dum
}
res <- do.call("rbind",res)
plot(nrows^2, res[,"elapsed"])
And I can't see a reason why this has to be so slow.
cheers
On 29 June 2016 at 12:00, Rolf Turner wrote:
> On 29/06/16 21:16, Witold E Wolski wrote:
>>
>> It's the inverse prob
It's the inverse problem to merging a list of data.frames into a large
data.frame just discussed in the "performance of do.call("rbind")"
thread
I would like to split a data.frame into a list of data.frames
according to first column.
This SEEMS to be easily possible with the function base::by. How
Gunter
>
> "The trouble with having an open mind is that people keep coming along
> and sticking things into it."
> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
>
>
> On Mon, Jun 27, 2016 at 8:51 AM, Witold E Wolski wrote:
>> I ha
Are accessors a fancy feature that do not work?
I wanted to use accessor functions in a R refclass to hide the classes
implementation where I am using sqlite.
What I did observe is, that if I access in a method any of the fields
(in the example below field .data in method printExample) all the
ac
I have a list (variable name data.list) with approx 200k data.frames
with dim(data.frame) approx 100x3.
a call
data <-do.call("rbind", data.list)
does not complete - run time is prohibitive (I killed the rsession
after 5 minutes).
I would think that merging data.frame's is a common operation. I
I have two inputs to sweep which are numeric (with a few NA's) but the
output is NaN. How Why?
> sum(!is.numeric(unlist(protquant)))
[1] 0
> sum(!is.numeric(normalize))
[1] 0
> normprotquant <- sweep(protquant, 2, normalize, "-" )
> sum(is.nan(unlist(normprotquant)))
[1] 31
version R 3.3.0
bes
v() object. It did not give an
error and produced a result but I don't know if it did a competing risk
analysis or not.
Thanks.
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li Ka Shing Knowledge Institute of St. Michael's Hospital
Assistant Professo
of ...
best
On 11 May 2016 at 15:45, Vito M. R. Muggeo wrote:
> Hi Witold,
> use do.call()
>
> list.args<-list(...)
>
> #modify 'list.args' (add/delete/modify)
>
> do.call(image, list.args)
>
> best,
> vito
>
>
> Il 11/05/2016 10.45, Wito
pts a factor
outcome but if not, you would need to re-code it to 0/1.
Kevin
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li Ka Shing Knowledge Institute of St. Michael's Hospital
Assistant Professor, Dalla Lana School of Public Health
University of Tor
Hi,
I am looking for a documentation describing how to manipulate the
"..." . Searching R-intro.html gives to many not relevant hits for
"..."
What I want to do is something like this :
image.2 <- function(x, col , ...){
# function is manipulating colors (adding a few)
# since it changes colo
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--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Re
Dear List,
What I am seeking advice for is how to best package an R installation
with all the packages required?
Scenario:
I need to deliver an R script which will have quite a bit of package
dependencies, to packages which are not necessarily stable, are not on
cran and might dissapear in the n
Courier) so that's what I follow.
--
Kevin E. Thorpe
Head of Biostatistics, Applied Health Research Centre (AHRC)
Li Ka Shing Knowledge Institute of St. Michael's
Assistant Professor, Dalla Lana School of Public Health
University of Toronto
email: kevin.tho...@utoronto.ca Tel: 416.864
I do have an Rmd where I would like to conditionally evaluate the second part.
So far I am working with :
```{r}
if(length(specLibrary@ionlibrary) ==0){
library(knitr)
opts_chunk$set(eval=FALSE, message=FALSE, echo=FALSE)
}
```
Which disables the evaluation of subsequent chunks.
However my
I am running r-markdown from r-studio and can't work out how to keep
the figures.
I mean I have a few figures in the document and would like to have
them as separate pdf's too as I have been used to have them when using
Sweave.
best regards
Witold
--
Witold Eryk Wolski
__
Hi Jeff,
Indeed there was something about plain-text in the r-help posting
guide although I can't find it there anymore.
https://www.r-project.org/posting-guide.html
Is it still an requirement?
Jeff, thanks for you constructive contribution ;) . Glad that you know
about plain text mode
What is the access time for R lists given a name of list element, is it
linear, log, or constant?
Than what are to rules for names in R-lists
That reusing names is possible makes me wonder.
tmp <- as.list(c(1,2,3,4))
names(tmp) = c("a","a","b","b")
tmp
tmp$a
What I am looking for is a standard
To answer my own question. Dono if it's the right way to do... In the
example code I am using a single CPU and it works.
regards
PS. Should I have asked this question on the devel list?
On 2 September 2015 at 14:39, Witold E Wolski wrote:
> I am testing a package with
>
> R C
I am testing a package with
R CMD check
and
R CMD check --as-cran
some code which is run in the examples section uses the foreach and
doParallel package.
When run with --as-cran I have an error.
registerDoParallel function causes an error.
Error in .check_ncores(length(names)) : 6 simultaneous
I have a tab delimited table in the data directory of a package.
I would like that when loading this data with
data(tablename)
in the example section the strings are not coerced to factors.
How can I achieve it? Or should I move this tables to the inst/extdata
directory and load them with read.t
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