[R] document methods in Reference Classes

2013-04-23 Thread Andrea Franceschini
ackage.skeleton" function do NOT generate those files automatically for methods of a reference class. Am I supposed to create those files manually ? Thx a lot for the help, Best Regards, Andrea Franceschini [[alternative HTML version deleted]] ___

Re: [R] write merged data frame to a file

2011-07-19 Thread Andrea Franceschini
sistance, Now that I realized that the quoting exists I can enjoying using R (that as a tool perfectly suits my needs at the moment). Have a nice day, Andrea On Mon, Jul 18, 2011 at 7:36 PM, David Winsemius wrote: > > On Jul 18, 2011, at 11:10 AM, Andrea Franceschini wrote: > >&

Re: [R] write merged data frame to a file

2011-07-18 Thread Andrea Franceschini
ct that everything is working. How can I make it work ??? Effectively there are several ' (i.e. apostrophe) characters in the file. I guess are those that confuse R Thankyou very much, Best Regards, Andrea On Mon, Jul 18, 2011 at 4:32 PM, Philipp Pagel wrote: > On Mon, Jul 18, 2011 a

Re: [R] write merged data frame to a file

2011-07-18 Thread Andrea Franceschini
T-cell leukemia homeobox 2 3197HOXA@ homeobox A cluster 3198HOXA1 homeobox A1 3199 HOXA2 homeobox A2 3200HOXA3 homeobox A3 3201HOXA4 homeobox A4 Thankyou very much, Best Regards, Andrea On Mon, Jul 18, 2011 at 2:45 PM, Sarah Goslee wrote: > Hi Andrea, >

[R] write merged data frame to a file

2011-07-18 Thread Andrea Franceschini
Dear all, I merged 2 data frames using the merged command and the resulting data frame looks perfect into R. However, I have serious problems when I try to write this new data frame into a file using the write.table command. Basically I get parts of the second file that I merged into the file.

Re: [R] hypergeometric vs fisher.test

2010-08-13 Thread Andrea Franceschini
I ask the question also because I found this line in Wikipedia: "The test (see above) based on the hypergeometric distribution (hypergeometric test) is identical to the corresponding one-tailed version of Fisher's exact test". Is this wrong ? May I kindly ask a friendly explanation for not-exper

[R] hypergeometric vs fisher.test

2010-08-13 Thread Andrea Franceschini
Dear R team, I have a simple question. I tried this command: phyper(17,449,19551,181, FALSE) [1] 1.47295e-07 and then I tried this command: (fisher.test(matrix(c(17,449,181,19551),2,2), alternative='greater'))$p.value [1] 3.693347e-06 Shouldn't be identical the results of the two commands ? Wh