If you look at the examples on the manual pages for the upgma() and NJ()
functions you will see that the results are generally sent to the plot()
function. To save that graph as an .svg file you need to open a graphics
device using the svg() function, plot the data, and close the graphics
device. Y
On 12/3/20 7:12 PM, Anas Jamshed wrote:
#Loading the required libraries
library(ape)
library(phangorn)
library(seqinr)
#Importing the required file
align_5 <- read.alignment("C:/Users/VAMSI/align 5.fasta", format = "fast")
align_119 <- read.alignment("C:/Users/VAMSI/align 119.fasta", format = "
Per the posting guide linked below (have you read it??):
"*Questions about statistics:* The R mailing lists are primarily intended
for questions and discussion about the R software. However, questions about
statistical methodology are sometimes posted. If the question is well-asked
and of interest
#Loading the required libraries
library(ape)
library(phangorn)
library(seqinr)
#Importing the required file
align_5 <- read.alignment("C:/Users/VAMSI/align 5.fasta", format = "fast")
align_119 <- read.alignment("C:/Users/VAMSI/align 119.fasta", format = "fasta")
Computing the distance matrix for bo
Hi,
I am trying to make comparison between the lm, gam(mgcv) and lme(nlme)
models. The problem is I am not able to find a single criterion on which
these 3 models are comparable.
I am using method "ML" for both gam and lme, yet the AIC and BIC formulas
differ due to the degrees of freedom.
Is th
Warning: I have basically no idea what you are doing. I presume that you
have consulted ?svg, however. If not , you should probably do so.
Also, a search on "save as svg" on rseek.org brought up the svglite
package, among other resources. You might want to see what that offers.
Cheers,
Bert Gunt
#Loading the required libraries
library(ape)
library(phangorn)
library(seqinr)
#Importing the required file
align_5 <- read.alignment("C:/Users/VAMSI/align 5.fasta", format = "fast")
align_119 <- read.alignment("C:/Users/VAMSI/align 119.fasta", format = "fasta")
Computing the distance matrix for bo
My suggestion would be to ask this question in a forum devoted to that topic,
such as the Bioconductor forum [1].
[1] https://www.bioconductor.org/help/support/
On December 3, 2020 11:25:24 AM PST, "Li, Aiguo (NIH/NCI) [E] via R-help"
wrote:
>Dear all,
>
>One of our PIs has a targeted sequenci
Dear all,
One of our PIs has a targeted sequencing dataset generated a while ago. He is
interested in finding out VAF of a group of genes. This is the first dataset
of this types we have. I would be appreciative for any suggestions on
pipelines for analyzing this type of data.
Thanks
Anna
Dear R users:
mapSpain is now available on CRAN. This package provides the administrative
boundaries of Spain at several levels: all NUTS levels, Autonomous
Communities , Provinces and municipalities (sf objects).
The package also has the ability of downloading WMS/WMTS geotagged images
of differ
Hi Jose,
Searching for "soil pH data" reveals a bucketload of sites with this
sort of data in lots of formats.
Jim
On Thu, Dec 3, 2020 at 10:07 PM José Luis Aguilar
wrote:
>
> Dear list members,
>
> I am looking for soil pH data for Europe and Africa, but I don't.
> I need them to set up a map
Dear list members,
I am looking for soil pH data for Europe and Africa, but I don't.
I need them to set up a map in R for my research.
Please, someone where to find this data in tif formats preferably.
thank you
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_
Thank you Jim for your solution.
I understood everything. As you say, splitting the POSIXct field is the key.
I apologise for not having used dput. I never used it but I will get aknowleged
with it in a short time.
Thank you
Stefano
(oo)
--oOO--( )--OOo
Stefano Sofia Ph
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