Re: [R] TWITTER API environment variables

2020-04-08 Thread Patrick Connolly
Apart from allowing the twitter app access, I didn't do anything to adjust the settings other than editing the ~/.Renviron file which set up the environment variable/s. It appears to me that they are appropriate since they work if I use R from the bash prompt or Rstudio. The problem is apparan

Re: [R] how to create a new column with conditions

2020-04-08 Thread Rasmus Liland
On April 8, 2020 1:17:38 PM PDT, Ana Marija wrote: | Hi, | | I have a data frame like this: Or ... *drum-roll* ... you could use plain old indexing. Have a look: a <- "FIDLASER2 CURRELIGPLASER RTNPTHY fam1000_G1000 1 1 1 1 fam1001_G1001 1 1 1

Re: [R] how to create a new column with conditions

2020-04-08 Thread William Dunlap via R-help
>I would like to create a new column called PHENO which would satisfy >these >conditions: > >if CURRELIG=1 and RTNPTHY=1 than PHENO=1 >if PLASER=2 than PHENO=2 >otherwise is -9 I assume that if CURRELIG==1 and RNPTHY==1 and PLASER==2 then PHENO should be 1. Or should that case flag a data error?.

Re: [R] how to create a new column with conditions

2020-04-08 Thread Jeff Newmiller
Now that you have been shown how to do this, post your (non-working) code next time. And configure your email program to send plain text so we will see what you saw. a$PHENO <- ifelse( a$CURRELIG==1 & a$RTNPTHY==1 , 1 , ifelse( a$PLASER==2

[R] how to create a new column with conditions

2020-04-08 Thread Ana Marija
Hi, I have a data frame like this: > head(a) FID LASER2 CURRELIG PLASER RTNPTHY 1 fam1000_G1000 11 1 1 2 fam1001_G1001 11 1 1 3 fam1003_G1003 21 2 2 4 fam1005_G1005 11 1 2 5 fam1009_G1009

Re: [R] R Markdown & chunk extraction in R

2020-04-08 Thread Yihui Xie
Hi Ashim, read_chunk() can only read R scripts. Regards, Yihui -- https://yihui.org On Wed, Apr 8, 2020 at 10:24 AM Ashim Kapoor wrote: > > Dear Yihui, > > Can we not 1st use read_chunk to import an Rmd and then do knit_code()$get ? > I could be mistaken. Please correct me if I am wrong. > > B

Re: [R] R create .docx file ?

2020-04-08 Thread Jeff Newmiller
The OP clearly hasn't followed the excellent documentation... this is not a maintainer problem. It is the act of printing the completed object that puts a file on disk. However, the package author recommends in the README that help be requested from stackoverflow, as the mailing list Posting Gu

Re: [R] R create .docx file ?

2020-04-08 Thread Bert Gunter
But the OP explicitly notes that the read_docx package does *not* write files and asks whether there are *other* packages or functions that provide that functionality. It still seems to me that the ReporteR maintainer might be the best place to go for that info, although there is certainly no assur

Re: [R] R create .docx file ?

2020-04-08 Thread Jeff Newmiller
But before hassling the maintainer the OP should read the package vignettes and run some examples... read_docx does not write to any files, so complaining that it doesn't will be fruitless. On April 8, 2020 9:31:41 AM PDT, Bert Gunter wrote: >This sounds like the sort of specialized question t

Re: [R] R create .docx file ?

2020-04-08 Thread Bert Gunter
This sounds like the sort of specialized question that should be directed to the maintainer (?maintainer) rather than to a general Help list such as this. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathe

[R] R create .docx file ?

2020-04-08 Thread A Biologist
Dear All, Mac Catalina - R 3.6.3 - all up-to-date packages. I would like to re-create the functionality which was found in the package {ReporteRs} by creating a .docx file in a folder on my computer from within R - which can subsequently be used by the {officer} function read_docx. The function re

Re: [R] R Markdown & chunk extraction in R

2020-04-08 Thread Ashim Kapoor
Dear Yihui, Can we not 1st use read_chunk to import an Rmd and then do knit_code()$get ? I could be mistaken. Please correct me if I am wrong. Best, Ashim On Wed, Apr 8, 2020 at 8:47 PM Yihui Xie wrote: > And please note that knitr::knit_code$get() only works (i.e. returns a > named list of co

Re: [R] R Markdown & chunk extraction in R

2020-04-08 Thread Yihui Xie
And please note that knitr::knit_code$get() only works (i.e. returns a named list of code chunks) inside a knitr document when the document _is being knitted_. It doesn't work outside the document. Ideally, you should use the document parser of knitr, but it is not exported. Regards, Yihui -- http

Re: [R] TWITTER API environment variables

2020-04-08 Thread K. Elo
Hi again, ok, I see. How about repeating the steps described in the tutorial on your second computer instead of cloning the settings from the computer #1? There might be some other settings not correctly copied. HTH, Kimmo ke, 2020-04-08 kello 19:02 +1200, Patrick Connolly kirjoitti: > Hello Kim

Re: [R] R Markdown & chunk extraction in R

2020-04-08 Thread Ashim Kapoor
Dear Sigbert, Also see this :- https://www.rdocumentation.org/packages/knitr/versions/1.28/topics/knit_code Best, Ashim On Wed, Apr 8, 2020 at 1:13 PM Ashim Kapoor wrote: > Dear Sigbert, > > Please see this. > > https://bookdown.org/yihui/rmarkdown-cookbook/purl.html > > Best, > Ashim > > On

Re: [R] R Markdown & chunk extraction in R

2020-04-08 Thread Ashim Kapoor
Dear Sigbert, Please see this. https://bookdown.org/yihui/rmarkdown-cookbook/purl.html Best, Ashim On Wed, Apr 8, 2020 at 1:02 PM Sigbert Klinke wrote: > Hi, > > exists a possibility to extract chunks from a R Markdown file and to > return them as (named) list in R? > > Thanks Sigbert > > --

[R] R Markdown & chunk extraction in R

2020-04-08 Thread Sigbert Klinke
Hi, exists a possibility to extract chunks from a R Markdown file and to return them as (named) list in R? Thanks Sigbert -- https://hu.berlin/sk https://hu.berlin/mmstat3 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https:/

Re: [R] TWITTER API environment variables

2020-04-08 Thread Patrick Connolly
Hello Kimmo, Yes. I did that and it worked fine -- as far as it goes. But it didn't cover what to do when using the same twitter account on a computer with a different user name -- which is what my question was about. On Wed, 08-Apr-2020 at 08:55AM +0300, K. Elo wrote: |> Hi! |> |> Have you