Re: [R] Downloading R Data

Hi Spencer, Just download it to your R working directory and: load("GBM_data.Rdata") Worked okay for me (all 53.9 Mb) Jim On Mon, Apr 15, 2019 at 8:39 AM Spencer Brackett wrote: > > I am also looking to be able to read this file on an appropriate > application. As of now, it’s too large to v

Re: [R] Downloading R Data

On 4/14/2019 3:36 PM, Spencer Brackett wrote: I am also looking to be able to read this file on an appropriate application. As of now, it’s too large to view directly in GoogleDrive or word, and I can only get a mistranslated version of the script included as a .txt file. [image: File] GBM_

Re: [R] Help installing netReg

My apologies... here is the full code in summary install.packages("ggplot2") install.packages("ggplot2") source("https://bioconductor.org/biocLite.R";) ?BiocUpgrade source("https://bioconductor.org/biocLite.R";)biocLite("BiocUpgrade") source("https://bioconductor.org/biocLite.R";) biocLite("BiocUp

Re: [R] Help installing netReg

Mr. Ryan, If you are referring to the CRAN mirror, my default is US (NY) [https] On Sun, Apr 14, 2019 at 7:23 PM Chris Ryan wrote: > Spencer-- > > What is your compy set-up? Standalone, networked? Where is R installed? Do > you have write privileges to that location? > > Chris Ryan > -- > Sent

Re: [R] Why is it not possible to cut a tree returned by Agnes or Diana by height?

I think cutree() only works on things inheriting from class 'hclust' and agnes, et al do not produce such things. There are as.hclust methods for the output of agnes so you might try cutree( as.hclust( agnes(...)), h) instead of cutree( agnes(...), h) Bill Dunlap TIBCO Software wdunlap ti

Re: [R] Why is it not possible to cut a tree returned by Agnes or Diana by height?

Inline. Bert Gunter On Sun, Apr 14, 2019 at 4:12 PM Leszek Nowina wrote: > > asdf = data.frame(x=c(1,2,3), y=c(4,5,6), z=c(7,8,9)) > > cutree(agnes(asdf), h=100) > Error in cutree(agnes(asdf), h = 100) : > the 'height' component of 'tree' is not sorted (increasingly) > >

Re: [R] Help installing netReg

Spencer-- What is your compy set-up? Standalone, networked? Where is R installed? Do you have write privileges to that location? Chris Ryan -- Sent from my Android device with K-9 Mail. Please excuse my brevity. On April 14, 2019 6:18:37 PM EDT, Spencer Brackett wrote: >Good evening, > > I a

Re: [R] Help installing netReg

On 4/14/19 3:20 PM, Spencer Brackett wrote: Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The

[R] Why is it not possible to cut a tree returned by Agnes or Diana by height?

> asdf = data.frame(x=c(1,2,3), y=c(4,5,6), z=c(7,8,9)) > cutree(agnes(asdf), h=100) Error in cutree(agnes(asdf), h = 100) : the 'height' component of 'tree' is not sorted (increasingly) > cutree(diana(asdf), h=100) Error in cutree(diana(asdf), h = 100) : the 'height

[R] Downloading R Data

I am also looking to be able to read this file on an appropriate application. As of now, it’s too large to view directly in GoogleDrive or word, and I can only get a mistranslated version of the script included as a .txt file. [image: File] GBM_Data.RData

[R] Help installing netReg

Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The downloaded binary packages are in C:\Users\Spence

[R] Help installing netReg

Good evening, I am having problems with downloading the package used to generate regression models on R. The following is the error message I received. I tried installing BiocManager instead as suggested, but this too did not work. Any ideas? The downloaded binary packages are in C:\Users\Spence

Re: [R] Run time error with afex package

Presumably you mean R versions by the 3.whatevers. The current version of afex no longer requires stringi, but earlier versions did. The best course is to update afex, but you could also just install the stringi, as the error message you're getting suggests. Sarah On Sun, Apr 14, 2019 at 1:14 PM

Re: [R] Creating a mean line plot

Hi Bill, For the x-axis variable, in this case, indeed, I used rowMeans(cbind(get2.teratons, get5.teratons)). This averaged each value between these two 1-dimensional variables (i.e. value#1 of "get2.teratons" was averaged with value#1 of "get5.teratons" - this was done for all 90 values).  To

Re: [R] Are fitted.values available in pglm?

Thank you both for your responses! Bert - Are there specific tutorials you recommend on the subject? William - I first contacted the pglm maintainer before posting here (and also Stack Exchange ). Haven’t hea

[R] Run time error with afex package

Dear R Users: When I attempt the run the package afex I get the following error: require(afex) Loading required package: afex Error: package or namespace load failed for 'afex' in library.dynam(lib, package, package.lib): DLL 'stringi' not found: maybe not installed for this architecture? I hav

Re: [R] [External] Question about behavior of sample.kind in set.seed (R 3.6)

Thanks for the report. The sample.kind argument was not being passed on to the .Internal. This is now fixed in R-devel and the R 3.6.0 branch. Best, luke On Fri, 12 Apr 2019, Elizabeth Purdom wrote: > Hello, > > I am trying to update a package for the upcoming release of R, and my unit > tests

Re: [R] Creating a mean line plot

So you're saying rowMeans(cbind(matrix_a, matrix_b)) worked to obtain your X-axis values? Wild guess here, are you simply looking for: colMeans(rbind(matrix_a, matrix_b)) to obtain your Y-axis values? [Above assuming matrix_a and matrix_b have identical dimensions (nrow, ncol)]. --Bill William