Re: [R] [FORGED] R cairo_pdf function does not respect plotting boundaries

2019-03-04 Thread Paul Murrell
Hi (cc'ed to r-devel where further discussion should probably take place) Thanks Lee. I see that problem. There is a "+ 1" in the Cairo device code for setting the clipping region (https://github.com/wch/r-source/blob/ba600867f2a94e46cf9eb75dc8b37f12b08a4561/src/library/grDevices/src/cairo/cai

Re: [R] Error in Cairo::Cairo(file = imgName, unit = "in", dpi = dpi, width = w, : Failed to create Cairo backend!

2019-03-04 Thread Marcelo Laia
1. https://github.com/jsychong/MetaboAnalystR 2. https://www.dropbox.com/s/rchhnjg0gziwr2l/heatmap_1_dpi72.png?dl=0 3. https://www.dropbox.com/s/rchhnjg0gziwr2l/heatmap_1_dpi72.png?dl=0 On 04/03/19 at 02:41, Marcelo Laia wrote: > Hi, > > I'm trying to do a MetaboAnalystR [1]'s analysis with a lar

[R] Error in Cairo::Cairo(file = imgName, unit = "in", dpi = dpi, width = w, : Failed to create Cairo backend!

2019-03-04 Thread Marcelo Laia
Hi, I'm trying to do a MetaboAnalystR [1]'s analysis with a large dataset. All works great except PlotHeatMap function. This functions plot two type of image output: "overview" and "detail". In "overview" mode, we can do plot the image in png or pdf. However, in this mode, we do not could see the

Re: [R] Multilevel models

2019-03-04 Thread Fox, John
Dear Saul, The most commonly used mixed-effect models software in R, in the lme4 and nlme packages, use the Laird-Ware form of the model, which isn't explicitly hierarchical. That is, higher-level variables are simply invariant within groups and appear in the model formula in the same manner as