You seem to be writing in a jargon that is not typical on this list, and I
cannot identify what package you are using. I suspect that you need to be
asking your question in the Bioconductor support area.
---
Jeff Newmiller
You found the HH package. That is a good start.
Look at the ?MMC help page, and specifically at the entire maiz example.
For an example with two factors and a covariate and with multiple comparisons
look at the apple example in file
system.file("scripts/hh2", package="HH")
The example is in c
package dplyr's full_join, left_join, right_join, inner_join are also
comparable in speed to data table. The syntax is also more like merge's.
On Thu, Jan 15, 2015 at 2:17 PM, Mike Miller wrote:
> Thanks, Jeff. You really know the packages. I search and I guess I
> didn't use the right terms.
On Wed, Jan 14, 2015 at 7:40 PM, Jeroen Ooms wrote:
> Try 'precise' instead of 'utopic'
I meant 'trusty'. The version should match the underlying ubuntu:
http://www.linuxmint.com/oldreleases.php
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE an
Try 'precise' instead of 'utopic'
On Wed, Jan 14, 2015 at 7:31 PM, John Sorkin
wrote:
> I am trying to install R on Linux mint 17.1. I followed the instructions
> found on CRAN and got a messages about unmet dependencies. I detail below the
> steps I took:
>
> I added deb http://lib.stat.cmu.ed
I am trying to install R on Linux mint 17.1. I followed the instructions found
on CRAN and got a messages about unmet dependencies. I detail below the steps I
took:
I added deb http://lib.stat.cmu.edu/R/CRAN/bin/linux/ubuntu utopic/
to /etc/apt/sources.list
As can be seen below:
john-OptiPlex-G
Thanks, Jeff. You really know the packages. I search and I guess I
didn't use the right terms. That package seems to do exactly what I
wanted.
Mike
On Tue, 13 Jan 2015, Jeff Newmiller wrote:
On Tue, 13 Jan 2015, Mike Miller wrote:
I have many pairs of data frames each with about 15 mill
I apologize if this question is posted in the wrong place. I am using
portfolio.optim to run an optimization on a stock portfolio. As I
understand modern portfolio theory, to run a mean-variance optimization
of the allocation for a portfolio, you must specify an expected return.
The examples at
I will add a "[.tile.list" method in the next release of deldir so that
the appropriate attributes are preserved. This won't happen for a month
or so though; I have some other pressures on me at the moment.
cheers,
Rolf Turner
On 15/01/15 04:52, Raphael Päbst wrote:
Thanks Boris!
I know th
On 14/01/2015 21:37, jose.nunez-zul...@barclays.com wrote:
Hello R-users,
I have no practical experience with the R language itself but I've been tasked
to install it behind a corporate firewall. Basic installation seems sane but
when my user tries to install a custom library like this:
insta
Hello R Community!
I am an intermediate-level R user and I am trying to figure out how program
a two-way (Group and MCCB score) ANCOVA analysis and subsequent post-hoc
analysis.
My factors:
Group (2 levels)
Score (2 levels)
Covariates:
Age (continuous)
ICV (continuous)
Sex (M/F)
Y:
GMV(continuous)
Hello R-users,
I have no practical experience with the R language itself but I've been tasked
to install it behind a corporate firewall. Basic installation seems sane but
when my user tries to install a custom library like this:
install.packages("ggplot2")
Installing package into '/home/myuser/
Yes, there are several. Which is best and which subset to suggest depends
on what you are trying to do, what your inputs look like (do you have the
function, but want a simpler approximation? or do you have
observations/datapoints?)
If you can give us more detail about what you have to work with
Hey everyone,
I have data frame called subtest as following:
RNA.LATER.MEN2B_S5 RNA.LATER.ROSA_S4 RNA.MEN2B.1_S2 RNA.MEN2B.2_S3 RNA.ROSA_S1
1 13707 13866 12193 12671 10178
2 0 0 0 0 1
3 7165 5002 1256 1341 2087
6 8537 16679 9042 9620 19168
10 19438 25234 15563 16419 16582
16 3 3 11 3 5
I would li
Hello,
I am a beginner and I wanted to know if there is a way to approximate a
function that has 2 input variables and one output.
--
View this message in context:
http://r.789695.n4.nabble.com/Approximation-of-a-function-from-R-2-to-R-tp4701805.html
Sent from the R help mailing list archive a
I'm puzzled as to why I get this behaviour with str_split_fixed in the
stringr package.
> stringr::str_split_fixed('ab','',2)
[,1] [,2]
[1,] "" "ab"
> stringr::str_split_fixed('ab','',3)
[,1] [,2] [,3]
[1,] "" "a" "b"
In the first example, I was expecting to get
[,1] [,2]
[1,
Good point, John. Illustrates the danger of assuming there are no "perverse
cases".
-Don
--
Don MacQueen
Lawrence Livermore National Laboratory
7000 East Ave., L-627
Livermore, CA 94550
925-423-1062
From: John McKown
mailto:john.archie.mck...@gmail.com>>
Date: Wednesday, January 14, 2015 at 8
On Wed, Jan 14, 2015 at 10:03 AM, MacQueen, Don wrote:
> I know you already have a couple of solutions, but I would like to mention
> that it can be done in two steps with very simple regular expressions. I
> would have done:
>
> s <- c("lngimbintrhofixed","lngimbnointnorhofixed","test",
>
I know you already have a couple of solutions, but I would like to mention
that it can be done in two steps with very simple regular expressions. I
would have done:
s <- c("lngimbintrhofixed","lngimbnointnorhofixed","test",
'rhofixedtest','norhofixedtest')
res <- gsub('norhofixed$', '',s)
r
On Wed, Jan 14, 2015 at 4:32 AM, Emilio Gianicolo
wrote:
> Hi,
>
> I've some troubles in running this program
> http://rpubs.com/adam_dennett/8955.
>
> I create this object:
> temp <- tempfile(fileext = ".zip")
>
> But, after downloading this file
> download.file("
> http://epp.eurostat.ec.europa
Hi,
I think you need to open your project after In RStudio, go to project
options, then to the Git/SVN panel. Change the “Version control system”
from “None” to “Git”:
http://r-pkgs.had.co.nz/git.html#git-status
Karim
Ô__
c/ /'_;kmezhoud
(*) \(*) ⴽⴰⵔⵉⵎ ⵎⴻⵣⵀⵓⴷ
http://bioinformatics.tn/
Thanks Boris!
I know that I am just leaving out some tiles in the plot, but I
specifically want to drop those tiles for the plot and not calculate a
tesselation without these points. So I'll go with this solution and
hope it makes sense in the end.
Thanks again!
Raphael
On 1/14/15, Boris Steipe
Hi,
I've some troubles in running this program http://rpubs.com/adam_dennett/8955.
I create this object:
temp <- tempfile(fileext = ".zip")
But, after downloading this file
download.file("http://epp.eurostat.ec.europa.eu/cache/GISCO/geodatafiles/NUTS_2010_60M_SH.zip";,
temp)
when I try to unz
Dear Elizabeth,
Factor scores in the fa function are found by multiplying the standardized data
by the factor weights using matrix multiplication. This will give scores only
for subjects with complete data.
However, if you want, you can create them yourself by standardizing your data
and then
Hi,
creating a matrix from two vectors a, b by multiplying each combination can
be done e.g. via
a %*% t(b)
or via
outer(a, b) # default for third argument is '*'
But this yields a normal matrix.
Is there an efficient way to create sparse matrices (from the Matrix
package) like that?
Right
Dear R users, I have a very specific question.
I want to know how to create a local git repository from an exisitng file
(with some documents inside) just like we do when typing
git init
but from Rstudio.
I tried selecting FIle-->New Project-->Existing Directory--> and I select
the file but I
Hi,
I've some troubles in running this program
http://rpubs.com/adam_dennett/8955.
I create this object:
temp <- tempfile(fileext = ".zip")
But, after downloading this file
download.file("http://epp.eurostat.ec.europa.eu/cache/GISCO/geodatafiles/NUTS_2010_60M_SH.zip";,
temp)
when I try to un
plot.tile.list() expects its argument to be of class tile.list, and to have an
attribute "rw", both of which are not conserved after subsetting. You can do ...
if (!require(deldir)) {
install.packages("deldir")
library(deldir)
}
x <- rnorm(10)
y <- rnorm(10)
del <- deldir(x, y)
tl <- tile.li
1. Please in future specify the package (deldir here) that contains
the functions you refer to.
2. **Always** first try ?str before posting queries like this, as this
will often reveal the problem.
str(tl[1:800])
3. I would **guess** (ergo could well be wrong) that "[" is not
preserving the clas
Hi
I do not know what is deldir, tile.list and what is structure of tl and do not
have time to search.
what is result of tl[1:20]?
Do you expect such result?
maybe
plot(lapply(tl, "[", 1:800))
shall work.
Cheers
Petr
> -Original Message-
> From: R-help [mailto:r-help-boun...@r-proje
On 14/01/2015 14:20, Stanislav Aggerwal wrote:
This method of finding yhat as x %*% b works when I use raw polynomials:
x<-1:8
y<- 1+ 1*x + .5*x^2
fit<-lm(y~poly(x,2,raw=T))
b<-coef(fit)
xfit<-seq(min(x),max(x),length=20)
yfit<-b[1] + poly(xfit,2,raw=T) %*% b[-1]
plot(x,y)
lines(xfit,yfit)
But
Hello everybody!
I feel very stupid right now but suspect it has something to do with
tiredness. I am trying to drop the last couple of Elements from a list
and this doesn't work as expected.
My code looks something like this:
del <- deldir(x, y)
tl <- tile.list(del)
plot(tl)
Now, I only want to
This method of finding yhat as x %*% b works when I use raw polynomials:
x<-1:8
y<- 1+ 1*x + .5*x^2
fit<-lm(y~poly(x,2,raw=T))
b<-coef(fit)
xfit<-seq(min(x),max(x),length=20)
yfit<-b[1] + poly(xfit,2,raw=T) %*% b[-1]
plot(x,y)
lines(xfit,yfit)
But it doesn't work when I use orthogonal polynomials
Mosab Alqurashi KSU.EDU.SA> writes:
>
> ?Hello,
> I want to get the Maximum Likelihood Estimate (MLE) for an Extended
> weibull with three parameters. I have two problems. First, some
> times if I change the starting point for one of the parameters I got
> an error message. Second, sometime wh
I don't know the answer to your question. If nobody else answers it,
I'd suggest asking in R-devel instead, and include some simple code that
illustrates the problem, e.g. using "echo" to pipe something into an R
process and explaining what part of the output you want to suppress.
Duncan Murdoch
Your definition of p-value is not correct. See, for example,
http://en.wikipedia.org/wiki/P-value#Misunderstandings
-Original Message-
From: Monnand [mailto:monn...@gmail.com]
Sent: Wednesday, January 14, 2015 2:17 AM
To: Andrews, Chris
Cc: r-help@r-project.org
Subject: Re: [R] two-sam
Dear R developers,
i have rather a developer question.
>From an external application (different programming language) i contact R
>through pipes (process pipes -> exec).
On Linux i use the R (bash) script to start the R process which will be
available in a custom shell.
If i pipe a
Hi
par is for base graphics, barchart is grid graphics, you can not easily mix
those two together.
You can
myd<-melt(mydata)
Using REGIONE as id variables
barchart(REGIONE ~ value|variable ,data=myd)
or
with ggplot
p<-ggplot(myd, aes(x=REGIONE,y=value))
p+geom_bar( stat="identity")+facet_grid(
> Monnand
> on Wed, 14 Jan 2015 07:17:02 + writes:
> I know this must be a wrong method, but I cannot help to ask: Can I only
> use the p-value from KS test, saying if p-value is greater than \beta,
then
> two samples are from the same distribution. If the definition
Thank you Jeff for your tips, I found what I was looking for.
Stefano
Da: Jeff Newmiller [jdnew...@dcn.davis.ca.us]
Inviato: lunedì 12 gennaio 2015 9.13
A: Stefano Sofia; r-help@r-project.org
Oggetto: Re: [R] list of vectors which are part of an initial ve
Dear R-users,
I can't put 1 x 2 pictures on one plot by using barchart function of lattice
package.
I often use par function but I'm not able to do it.
This is my code and data:
mydata <-
structure(list(REGIONE = c("ABRUZZO", "BOLZANO - BOZEN", "CALABRIA",
"CAMPANIA", "EMILIA-ROMAGNA", "FRIULI
?Hello,
I want to get the Maximum Likelihood Estimate (MLE) for an Extended weibull
with three parameters. I have two problems. First, some times if I change the
starting point for one of the parameters I got an error message. Second,
sometime when I change the starting point for one of the p
> Richard Cotton
> on Wed, 14 Jan 2015 09:23:42 +0300 writes:
> Contributed packages have copies of their vignettes on CRAN (in their
> package page at /web/packages/).
> Since base packages no longer have a page here, I can't find a web link
to them.
> I'm aware th
Contributed packages have copies of their vignettes on CRAN (in their
package page at /web/packages/).
Since base packages no longer have a page here, I can't find a web link to them.
I'm aware that I can find the vignette via browseVignettes() or
vignette("vignettename", package = "packagename")
Hi,
it could also be that during reading your csv the matrix became a character
matrix.
Try str(x); this should show you if your values are seen as numeric.
Also, if you have descriptive columns (e.g. date, labels, etc.) they must
be removed before calculating PCR.
With best regards
Brandstätter
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