Re: [R] filled.contour key axis

2014-08-22 Thread Jim Lemon
On Fri, 22 Aug 2014 05:36:23 PM Lietz, Haiko wrote: > Hi Jim, all, > > Thx, I was hoping for percentage scores, such that R puts numbers with "%" > there. > > And by "automatically labeling" I meant giving the axis a title, sorry for > mixing that up. > > I havn't found an option in the paramet

Re: [R] BNF description for R

2014-08-22 Thread kevin2059
Thank you,that help a lot. At 2014-08-17 19:09:00,"Duncan Murdoch" wrote: >On 16/08/2014, 7:32 PM, kevin2059 wrote: >> HOW can I get a completely BNF description for R? I try to write a parser >> for R now. > >The R grammar is defined in the src/main/gram.y file (in Bison format). > You can get

Re: [R] loading saved files with objects in same names

2014-08-22 Thread Duncan Murdoch
On 22/08/2014, 1:14 PM, Jinsong Zhao wrote: > On 2014/8/22 1:02, Martin Maechler wrote: >> >>> Have you tried the 'envir' argument to load()? E.g., >>> envA <- new.environment() >>> load("A.RData", envir=envA) >>> envB <- new.environment() >>> load("B.RData", envir=envB) >>> pl

Re: [R] Subsetting data for split-sample validation, then repeating 1000x

2014-08-22 Thread David L Carlson
Combine your code into a function: Plant <- function() { train <- sample.int(nrow(A), floor(nrow(A)*.7)) test <- (1:nrow(A))[-train] A.model <- glmmadmb(nat.r ~ isl.sz + nr.mead, random = ~ 1 | site, family = "poisson", data = A[train,]) cor(Atest$nat.r, predict(A.model, ne

Re: [R] Subsetting data for split-sample validation, then repeating 1000x

2014-08-22 Thread David L Carlson
You can use replicate() or a for (i in 1:1000){} loop to do your replications, but you have other issues first. 1. You are sampling with replacement which makes no sense at all. Your 70% sample will contain some observations multiple times and will use less than 70% of the data most of the tim

Re: [R] filled.contour key axis

2014-08-22 Thread Jeff Newmiller
You seem to be thinking of Excel. R does not dress up numbers for you... if you want them represented in a particular way, you need to format them into a character string. There are plenty of options for doing that. --- Jeff

Re: [R] "no visible binding for global variable" and with() vs. within()

2014-08-22 Thread Henrik Bengtsson
I'm dealing with these type of false NOTEs as: foo1 <- function (bar) { # To please R CMD check x <- NULL; rm(list="x") with(bar, { x }) } Of course, that may one day break with more clever code inspections. My $.02 /Henrik On Fri, Aug 22, 2014 at 2:40 AM, Martin Maechler wrote

Re: [R] filled.contour key axis

2014-08-22 Thread Lietz, Haiko
Hi Jim, all, Thx, I was hoping for percentage scores, such that R puts numbers with "%" there. And by "automatically labeling" I meant giving the axis a title, sorry for mixing that up. I havn't found an option in the parameters for filled.contour. Haiko

Re: [R] loading saved files with objects in same names

2014-08-22 Thread Jinsong Zhao
On 2014/8/22 1:02, Martin Maechler wrote: Have you tried the 'envir' argument to load()? E.g., envA <- new.environment() load("A.RData", envir=envA) envB <- new.environment() load("B.RData", envir=envB) plot(A$object, B$object) Bill Dunlap TIBCO Software wdunlap tibco.co

Re: [R] print vectors with consecutive numbers

2014-08-22 Thread Bert Gunter
Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374 "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." Clifford Stoll On Fri, Aug 22, 2014 at 7:16 AM, James Wei wrote: > Hi Jorge, > > Thanks so much, it is working perfectly. There are so

Re: [R] Help on installing "R" packages in a Citrix

2014-08-22 Thread David Winsemius
On Aug 22, 2014, at 9:13 AM, David Winsemius wrote: > > On Aug 22, 2014, at 7:37 AM, Chirag Patel wrote: > >> Hi David >> >> I have installed R Version 2.15.1 on the image but having problems install >> rcom and rscproxy. > > Those are commercial packages and not maintained or supported by R

Re: [R] print vectors with consecutive numbers

2014-08-22 Thread James Wei
Hi Jorge, Thanks so much, it is working perfectly. There are so many for me to learn. Cheers. James From: jorgeivanve...@gmail.com Date: Fri, 22 Aug 2014 22:28:40 +1000 Subject: Re: [R] print vectors with consecutive numbers To: zwei0...@hotmail.com CC: r-help@r-project.org Hi James, Try

Re: [R] Help on installing "R" packages in a Citrix

2014-08-22 Thread David Winsemius
On Aug 22, 2014, at 7:37 AM, Chirag Patel wrote: > Hi David > > I have installed R Version 2.15.1 on the image but having problems install > rcom and rscproxy. Those are commercial packages and not maintained or supported by R-Core (That is also a rather old version of R and would have gotte

Re: [R] Euclidean Distance in 3 Dimensions

2014-08-22 Thread William Dunlap
> This function unfortunately does not work in 3d space. [I think 'this' is refering to the 'dist' function.] Can you show how it is not working for you? I.e., what does it produce compared to what you want for a given input? dist() does work on a 3-column (or n-column) matrix or data.frame, wh

Re: [R] knitr and stopifnot replacement.

2014-08-22 Thread Yihui Xie
Yep, that is exactly the answer. Regards, Yihui -- Yihui Xie Web: http://yihui.name On Fri, Aug 22, 2014 at 6:35 AM, Bart Kastermans wrote: > On 22 Aug 2014, at 12:39, Duncan Murdoch wrote: > >> On 22/08/2014, 6:02 AM, Bart Kastermans wrote: >>> I have a daily generated report in which I put

Re: [R] Help with analysis of variance

2014-08-22 Thread Richard M. Heiberger
Andrew, I plotted your data first. Then I made id, spell, year into factors and did the ANOVA. >From the graph, it looks like the two ids who had more than one spell show variability in rate. The ANOVA table agrees by showing high significance for the id:spell interaction. The numbers in this ANO

Re: [R] print vectors with consecutive numbers

2014-08-22 Thread Jorge I Velez
Hi James, Try mat[, apply(mat, 2, function(x) any(diff(x) == 1))] HTH, Jorge.- On Fri, Aug 22, 2014 at 10:18 PM, James Wei wrote: > > > Hi all, > > I have a matrix with consecutive and non-consecutive numbers > in columns. For example, the first 2 columns have consecutive numbers. I > want

[R] print vectors with consecutive numbers

2014-08-22 Thread James Wei
Hi all, I have a matrix with consecutive and non-consecutive numbers in columns. For example, the first 2 columns have consecutive numbers. I want R to print only columns with consecutive numbers. Here is the matrix and how I did using conditional statement: ## mat=matrix(data=c(9,2,3,4,5,6,1

[R] Help with analysis of variance

2014-08-22 Thread McCulloch, Andrew
Hi, I have an observational dataset which consists of eight annual observations (year) for children (id) recording the rate of unemployment in the neighbourhood in which they lived (rate). I know if children move home so the data also has an identifier for spells in the same neighbourhood (sp

Re: [R] Help on installing "R" packages in a Citrix

2014-08-22 Thread arnaud gaboury
On Fri, Aug 22, 2014 at 2:03 PM, S Ellison wrote: >> We are currently trying to migrate 3 users of "R" to a citrix based >> environment, but are coming across major issues trying to install the >> packages to the relevant image. > Please be more precised in your issue. __

Re: [R] Help on installing "R" packages in a Citrix

2014-08-22 Thread S Ellison
> We are currently trying to migrate 3 users of "R" to a citrix based > environment, but are coming across major issues trying to install the > packages to the relevant image. Why can't you open a virtualised OS instance, install and start R in the normal way, install the packages normally in R

Re: [R] knitr and stopifnot replacement.

2014-08-22 Thread Bart Kastermans
On 22 Aug 2014, at 12:39, Duncan Murdoch wrote: > On 22/08/2014, 6:02 AM, Bart Kastermans wrote: >> I have a daily generated report in which I put a check using stopifnot. >> Unfortunately >> I didn’t check the effect very well, turns out that if the condition checked >> fails >> this is not s

Re: [R] knitr and stopifnot replacement.

2014-08-22 Thread Duncan Murdoch
On 22/08/2014, 6:02 AM, Bart Kastermans wrote: > I have a daily generated report in which I put a check using stopifnot. > Unfortunately > I didn’t check the effect very well, turns out that if the condition checked > fails > this is not shown in the knitr output (I only get an error much later

[R] knitr and stopifnot replacement.

2014-08-22 Thread Bart Kastermans
I have a daily generated report in which I put a check using stopifnot. Unfortunately I didn’t check the effect very well, turns out that if the condition checked fails this is not shown in the knitr output (I only get an error much later due to a missing object). So my question is, what is th

Re: [R] loading saved files with objects in same names

2014-08-22 Thread Martin Maechler
> On 20/08/2014, 8:58 AM, Barry Rowlingson wrote: > > On Tue, Aug 19, 2014 at 1:30 AM, Jinsong Zhao wrote: > >> Hi there, > >> > >> I have several saved data files (e.g., A.RData, B.RData and C.RData). In > >> each file, there are some objects with same names but different > >> contents. Now, I ne

Re: [R] "no visible binding for global variable" and with() vs. within()

2014-08-22 Thread Martin Maechler
> Rolf Turner > on Mon, 18 Aug 2014 08:47:36 +1200 writes: > On 17/08/14 23:05, Duncan Murdoch wrote: >> On 16/08/2014, 9:36 PM, Daniel Braithwaite wrote: >>> R CMD check does not object to this code when checking a >>> package: >>> >>> foo1 <- function (bar)

Re: [R] Help on installing "R" packages in a Citrix

2014-08-22 Thread David Winsemius
On Aug 22, 2014, at 12:36 AM, Jon-Paul Cameron wrote: > Hi > > We are currently trying to migrate 3 users of "R" to a citrix based > environment, Windows?, Linux? "Citrix" isn't usually thought of as an OS is it? > but are coming across major issues trying to install the packages to the > r

[R] Help on installing "R" packages in a Citrix

2014-08-22 Thread Jon-Paul Cameron
Hi We are currently trying to migrate 3 users of "R" to a citrix based environment, but are coming across major issues trying to install the packages to the relevant image. Can someone please contact me around how the install should be done - as we can find no supporting documentation or help

Re: [R] loading saved files with objects in same names

2014-08-22 Thread Martin Maechler
> Have you tried the 'envir' argument to load()? E.g., >envA <- new.environment() >load("A.RData", envir=envA) >envB <- new.environment() >load("B.RData", envir=envB) >plot(A$object, B$object) > Bill Dunlap > TIBCO Software > wdunlap tibco.com An alternative that I have been