Hello all, I frequently use R, but recently have switched to a mac. When
creating a new graphic, I have used X11() for a new graphics window and
have always (when I used my PC) have been able to copy or print from this
graphic window. With my mac, it does not allow me to copy or print.
Having mu
1. ?"::"
2. ?getAnywhere
3. Please consult the "R language definition" manual -- or even "An
Introduction to R" -- to learn about R programming. It **is** a
programming language, you know!
Cheers,
Bert
On Thu, Aug 1, 2013 at 8:54 PM, Mike Rennie wrote:
> Hi folks,
>
> I've not before had to ed
Try typing this into google search bar:
[R] install packages
The majority of the results on the first page will help you out.
On Thu, Aug 1, 2013 at 8:43 PM, Said Filahi wrote:
> hello,
> i am new and I want to know how to install a packare on R
>
> thank you
>
>
> said filahi
>
> [[a
hello,
i am new and I want to know how to install a packare on R
thank you
said filahi
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Hi folks,
I've not before had to edit code right in a function, but I think I need
to. I am using lmer() and want to use a model that uses zero weights. I
found this thread from 2009:
https://stat.ethz.ch/pipermail/r-sig-mixed-models/2009q1/001995.html
but I'm unsure of how I would actually go a
On Thu, 1 Aug 2013, Jeff Newmiller wrote:
The Vectorize function is essentially a wrapped up for loop, so you are
really executing two successive for loops. Note that the Vectorize
function is not itself vectorised, so there is no particular advantage to
using it in this way. You might as we
I have a comma delimited file with 62 fields of which some are comments.
There are about 1.5 million records/lines. Sme of the fields which has
comments and which i do not need have 40 characters. Of the 62 fields, I
will need at most 12 fields. What's best way to read in the fields I need.
If I re
Hi Elaine,
I didn't find any errors by running the code.
Regarding the first question, the former is of class "numeric", and latter is
"character"
library(foreign)
dataNP_1 <-read.dbf("Anseriformes_13.dbf", as.is = FALSE)
##all the other vectors
res<-t(sapply(c( "Conti_Australia","Conti_Korea",
On Aug 1, 2013, at 6:58 PM, Peter Maclean wrote:
> Does R has a GO TO function? For example, I want to run this script at a
> given interval and save the results.
>
Generally communication is more effective if you make your goals clear in a
natural language (English in the case of this maili
There is no 'GO TO'.
Try wrapping your code in a while(TRUE){...} loop.
while(TRUE) {
... do something ...
Sys.sleep(time)
}
Or you could have it read from a named pipe which some other process
feeds.
while(length(readLines(n=1, "someNamedPipe"))==1) {
... do somethi
Does R has a GO TO function? For example, I want to run this script at a given
interval and save the results.
#Step one
a <- Sys.time()
b <- paste("Figure_", a, sep = " ")
shape <- as.numeric(a)/1
scale <- as.numeric(a)/100
#I want to save the file using "b" object (above) as a
Dear r-users,
I am using KS test to test the goodness of fit for my data and the got the
following output. However, I don't understand about the "warning messages".
What does it mean by "horizontals" is not a graphical parameter"
Thank you so much for any help given and it is very much appr
Hi-
Can someone confirm whether R runs on the Windows Server 2012 OS, and if so
whether there are any significant differences from running on e.g. Windows 7
that I ought to be aware of?
The R for Windows FAQ (URL below) seems to indicate that running on Windows
Server 2012 is possible, but the
Hi Tony,
Did you try the `auglag' algorithm in "alabma" package?
Ravi
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PLEASE do read the posting guide http://www.R-project.or
Greetings.
I am conducting a meta analyses that has Beta and SE values.
I am wondering how to place the command to split the analyses. Could you
assist me to develop the command within the syntax? I would also like to
add the N and Year values in the plot. I would like my plot to look like
the on
Very nice - thank you, I didn't know about type='s'.
On Thu, Aug 1, 2013 at 3:43 PM, Greg Snow <538...@gmail.com> wrote:
> lines( tmp$breaks, c(tmp$counts,tail(tmp$counts,1)), type='s',
> col='#00ff0077', lwd=5 )
>
>
>
> On Thu, Aug 1, 2013 at 1:30 PM, Levi Waldron
> wrote:
>
>> I want to repre
Hi all,
I'm trying to change the pch, color, lty, and lwd in a type="p" plot
produced by plot.Predict in the rms package. What I'm shooting for is a
separate plotting symbol symbol color for each level of a factor (and also
to manage the line width for the CIs).
Here's what I hope is a working e
lines( tmp$breaks, c(tmp$counts,tail(tmp$counts,1)), type='s',
col='#00ff0077', lwd=5 )
On Thu, Aug 1, 2013 at 1:30 PM, Levi Waldron wrote:
> I want to represent a histogram by the line along its top border, *without*
> kernel smoothing (to show several histograms in the same plot). This works,
I want to represent a histogram by the line along its top border, *without*
kernel smoothing (to show several histograms in the same plot). This works,
but is there simpler recommended way?
x <- rnorm(1000)
tmp <- hist(x, border="white")
for (i in 1:(length(tmp$breaks)-1)){
segments(x0=tmp$bre
Ista, you were right with the integer vs. double issue: I just found this
out while filing a bug to the R Bugzilla. You can find the bug report here:
https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=15411
Please let me know if it does not seem to cover all your comments, I'll add
more deta
... and please search before posting.
Googling "bayesian mixed models in R"
brought up package blme among others.
-- Bert
On Thu, Aug 1, 2013 at 11:10 AM, Bert Gunter wrote:
> I suggest you post this on the r-sig-mixed-models list, instead, as
> there are likely to be follow-up questions and
I suggest you post this on the r-sig-mixed-models list, instead, as
there are likely to be follow-up questions and that is where there is
the most interest in this sort of thing.
Cheers,
Bert
On Thu, Aug 1, 2013 at 10:56 AM, li li wrote:
> Hi all,
>Does anyone know whether there is an R func
Hi Mathieu,
I don't have a full explanation, but here is some additional observations:
> options(digits = 4)
>
> ## Simplified example
> df2 <- data.frame(x = rnorm(21), y = rnorm(21), id = 0:100010)
> apply(df2, 1, function(dfi) format(dfi["id"], scientific = FALSE))
[1] "0" "1" "
I think this is on topic here, but a reproducible example is highly desirable
if not required for clarity.
The Vectorize function is essentially a wrapped up for loop, so you are really
executing two successive for loops. Note that the Vectorize function is not
itself vectorised, so there is no
Thanks David. It is more compact than my code. dat1<-
read.table("RP_matrix_RF_ZPTvsPGR.txt",sep="",header=TRUE,stringsAsFactors=FALSE)
dat2<- dat1
#Speed comparison:
system.time(dat1[,-1]<- lapply(lapply(dat1[,-1],round),as.integer))
# user system elapsed
#0.012 0.000 0.011
system.
Hi all,
Does anyone know whether there is an R function available to find the
Bayesian variance components estimators
for random effects or mixed models?
Thank you very much.
Hanna
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You could report it as a bug at
https://bugs.r-project.org/bugzilla3/
Bill Dunlap
Spotfire, TIBCO Software
wdunlap tibco.com
> -Original Message-
> From: Mathieu Basille [mailto:basille@ase-research.org]
> Sent: Thursday, August 01, 2013 10:31 AM
> To: R help
> Cc: William Dunlap
>
Assuming you have created a data.frame from the text file you
sent that is called RP:
> str(RP)
# 'data.frame': 28597 obs. of 8 variables:
# $ gene : chr "XLOC_01" "XLOC_02" "XLOC_03"
"XLOC_04" ...
# $ ZPT.1: num 3516 342 2000 143 0 ...
# $ ZPT.0: num 626 82 361 30 0 0 0 0 0
Nicely spotted, Bill! You went much farther than I could have. We can
basically summarize the problem with the following simple example:
> format(9994, digits = 3)
[1] "9994"
> format(9995, digits = 3)
[1] " 9995"
I'm still not sure why this is happening, though: The 'digits' parameter is
used
I guess this has been discussed before, but I don't know the name of this
problem, thus had to ask again.
Consider this scenario:
fun <- function(x) { print(x)}
for (i in Vectorize(fun, "x")(1:3)) print("OK")
[1] 1
[1] 2
[1] 3
[1] "OK"
[1] "OK"
[1] "OK"
The optimal behaviour is:
fun <- f
Greetings.
I am conducting a meta analyses that has Beta and SE values.
I am wondering how to place the command to split the analyses. Could you
assist me to develop the command within the syntax? I would also like to
add the N and Year values in the plot. I would like my plot to look like
the o
I am very confuse,
I send with a wrong subject.
All my Apologizes
-
De : Guibert TCHINDE
Date d'envoi : jeudi 1 août 2013 18:51
À : r-help@r-project.org
Cc : R help
Objet : RE : [R] Conversion of matrix in r to integer
Dear List,
I am trying to repli
I see the problem on both Linux and Windows, R-3.0.1.
> vapply(as.numeric(9994:9995), function(x)format(x, scientific=FALSE,
digits=3), "")
[1] "9994" " 9995"
> vapply(as.numeric(4:5), function(x)format(x, scientific=FALSE,
digits=4), "")
[1] "4" " 5"
> vapply(as.nume
On Aug 1, 2013, at 18:09 , Jeff Newmiller wrote:
> Your example is not reproducible, so we can only guess what is happening.
> Please read the footer of this (or any other R-help) email and follow those
> instructions. You may also find the discussion at
> http://stackoverflow.com/questions/59
Hi,
It is better to keep it as a data.frame as matrix cannot hold different classes
together, so it automatically converts the other columns into "character" as
the first column "gene" is "character".
dat1<-
read.table("RP_matrix_RF_ZPTvsPGR.txt",sep="",header=TRUE,stringsAsFactors=FALSE)
dat1
Thanks for the reply
>From the link you provided, only two packages mentioned categorical field:
>depmix and depmixS4. I'll look at them.
-Original Message-
From: David Winsemius [mailto:dwinsem...@comcast.net]
Sent: Thursday, August 01, 2013 12:15 PM
To: Li, Yan
Cc: r-help@r-proj
On Aug 1, 2013, at 9:00 AM, Li, Yan wrote:
> Hi All,
>
> Does anyone know what algorithm for clustering categorical variables? R
> packages?
Many.
http://cran.r-project.org/web/views/Cluster.html
> Which is the best?
For what purpose?
>
> If a data has both numeric and categorical data, wh
Great! Thanks!
Yeah, I just use the usual way: as.numeric(..) for numeric
transformation...seemed a standardization is needed. Thank you.
-Original Message-
From: David Carlson [mailto:dcarl...@tamu.edu]
Sent: Thursday, August 01, 2013 12:08 PM
To: Li, Yan; r-help@r-project.org
Subject:
Read up on Gower's Distance measures (available in the ecodist
package) which can combine numeric and categorical data. You
didn't give us any information about how you numerically
transformed the categorical variables, but the usual approach
is to create indicator variables that code presence/abse
Your example is not reproducible, so we can only guess what is happening.
Please read the footer of this (or any other R-help) email and follow those
instructions. You may also find the discussion at
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
helpful.
You may be interested in the iplots package. It has methods where you can
create multiple plots and select a point or points in one plot and they
will be highlighted on the other plots.
On Wed, Jul 31, 2013 at 8:57 AM, Jurgens de Bruin wrote:
> Hi All,
>
> I am new at R so any help would be app
Hi All,
Does anyone know what algorithm for clustering categorical variables? R
packages? Which is the best?
If a data has both numeric and categorical data, what is the best clustering
algorithm
to use and R package?
I tried numeric transformation of all categorical fields and doing clusterin
On Aug 1, 2013, at 1:02 AM, Dumortier, Thomas wrote:
> Hello
>
> I have an issue with obtaining a confidence interval from a coxph object in R
> while using a spline-transformed covariate.
>
> This is a time to event analysis using coxph() from the survival package.
> In the model below, COV
This problem does not seem to be widely popular, but at least affects two
users (both on Linux, maybe a hint here?). To me, it looks like a bug (is
it a R bug, or a OS-related bug, I don't know). Should I forward it to
R-devel, or some other place where R gurus may have a chance to look at it?
Hi Darren,
Take a look at the effects package. The documentation is good and
these articles will help you get oriented:
http://www.jstatsoft.org/v08/i15 http://www.jstatsoft.org/v32/i01
Best,
Ista
On Thu, Aug 1, 2013 at 1:56 AM, Darren Andrew Whitehead
wrote:
> Hello R Project,
> I am having a
HI Elaine,
>From the error, it looks like there are cases where none of the elements in
>one of the element matches to the GID column of dataNP.m.
It's only a guess as you didn't provide information about the "Islands".
I was able to recreate the error you got.
dataNP.m<-structure(c(1L, 2L, 3L,
Hi,
I'm working through practice data in R and I am helped up on this step. I am
not sure why there is an error that claims there is a duplicate subscript
for columns?
Does anyone know what this means and how I can fix it?
> newdata2<-cbind(newdata2,predict(mylogit,newdata=newdata2,type="link",s
Hi,
I'm working through practice data in R and I am held up on this step. I am
not sure why there is an error that claims there is a duplicate subscript
for columns?
Does anyone know what this means and how I can fix it?
> newdata2<-cbind(newdata2,predict(mylogit,newdata=newdata2,type="link",se=
There is a problem with your example data set. "Series" has only one value so
there is no faceting. Also you refer to "trim.index$Rate" . Where is it coming
from or is trim.index just another name for "thing"
John Kane
Kingston ON Canada
> -Original Message-
> From: david_txert...@yah
This has nothing to do with R per se.
You need to consult a local statistician and stop fooling with Internet forums.
Cheers.
Bert
On Thu, Aug 1, 2013 at 3:10 AM, Stéph BELLEGO wrote:
> Dear all,
>
> We are trying to validate a new measurement method by comparing it to a
> reference method, b
mat1<-structure(c(1L, 2L, 3L, 4L, 5L, 6L, 7L, 8L, 9L, 10L, 11L, 12L,
13L, 14L, 15L, 16L, 17L, 18L, 19L, 20L, 0L, 0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L,
0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L
On 13-08-01 4:36 AM, Zhang Weiwu wrote:
Hello. readBin is designed to read a batch of data with the same spec, e.g.
read 1 floats into a vector. In practise I read into data frame, not
vector. For each data frame, I need to read a integer and a float.
for (i in 1:1000) {
dataframe$i
Hi Maria,
Thanks! I just happened to read this but normally don't read r-help. It is
best to send specific questions on not well known packages to the
maintainer directly.
The example on my website is hardcoded in the package. I should really also
add the option to make a legend like you want tho
Hi all,
Since am new to the forums I'd like to say hello to everyone.
My questions revolves around optimizing a simple GARCH process.
Lets assume we have a function names garchlik and takes as inputs
(parameters, data, p,q); where p and q are the ARCH and GARCH effects.
Have tried the simple a
Here is a way to do it with qgraph. Requires lots of manual placement
though. I have been asked before to write a package to do these kind of
graphics automatically from R given some model. Might do it eventually :)
library("qgraph")
# Placement of nodes:
Layout <- matrix(c(
1,1,
2,1,
3,1,
Dear all,
We are trying to validate a new measurement method by comparing it to a
reference method, but we don't manage to find out how to do it...
Here are the data we have :
***
Sample# ; Ref_1 ; Ref_2 ; Ref_3 ; Ref_4 ; Ref_5 ; Ref_6 ; Ref_7 ; Ref_8 ; Ref_9
; Ref_10 ; New_1 ; New_2 ; New_3 ;
Thank you!
I have used the replicate function. In fact, I had just found the solution when
I received your answers.
Best regards,
Rita
_
Rita Gamito
Centro de Oceanografia
Faculdade de Ciências, Universidade de Lisboa
Campo Grande, 1749-016 Lisboa, Portugal
e
Hello. readBin is designed to read a batch of data with the same spec, e.g.
read 1 floats into a vector. In practise I read into data frame, not
vector. For each data frame, I need to read a integer and a float.
for (i in 1:1000) {
dataframe$int[i] <- readBin(con, integer(), size
I do not want to use the b word, but can anyone who also subscribes to
the r-developer list forward my observation regarding heatmap? I am
pretty confident that the behaviour of heatmap in R 3.0.1 is not that
one intended.
On 31 July 2013 14:03, Witold E Wolski wrote:
> Would anyone of the mor
Hello arun
I modified your code a little bit but failed to retrieve the row.names.
The response is NULL.
Please kindly help and thanks.
Elaine
Code
load("h:/b_W_line/R_workspace/dataset_Residence_2748.RData")
dim(dataR)
str(dataR)
dataR.m<- as.matrix(dataR, header=TRUE)
dataR.m[,
On 08/01/2013 12:57 AM, Jurgens de Bruin wrote:
Hi All,
I am new at R so any help would be appreciate.
Below my current R-code/script:
initial.dir<-getwd()
setwd('/Users/jurgens/VirtualEnv/venv/Projects/QTLS/Resaved_Results')
dataset<- read.table("LWxANNA_FinalReport_resaved_spwc.csv", header=
Hi,
The solution that works now is
closeAllConnections()
But even if I replace the 'list' with the 'array' I get a similar error.
"Exception is Error in UseMethod(\"close\"): no applicable method for
'close' applied to an object of class \"c('double', 'numeric')\"\n"
#Write ea
Hello R Project,
I am having a little trouble with interpreting my GLM results and I wonder if
you may be able to help.
I am doing a generalised linear model in R studio by outcome variable is binary
either effected or not effected. I have my final model structure which has been
validated and fi
Hello
I have an issue with obtaining a confidence interval from a coxph object in R
while using a spline-transformed covariate.
This is a time to event analysis using coxph() from the survival package.
In the model below, COVA is a continuous covariate. COVA is time-dependent
hence the counti
Hello,
According to the list of available packages, there is no "EMMIX" package.
You probably should use a web search engine to find where you can download
a EMMIX version for R.
Regards,
Pascal
2013/8/1 Tjun Kiat Teo
> Is the R package EMMIX available ? I tried installing it and it keeps
> s
Is the R package EMMIX available ? I tried installing it and it keeps
saying the package is not available for R verseion 3.0.1
teotjunk
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