Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-31 Thread Eugenie
thanks all.your help much appreciated. and its usefull -- View this message in context: http://r.789695.n4.nabble.com/HELP-how-to-remove-10-of-data-randomly-in-R-tp4647879p4648098.html Sent from the R help mailing list archive at Nabble.com. __ R-hel

[R] How to parse xml with same key name ?

2012-10-31 Thread Manish Gupta
HI, I need to parse an xml where key name are same but values are different. Some dummy text one two three When i use xmlGetAttr() function i always get one as value. How can i get one , two and three? Pls help me out of this pblm . -- View th

Re: [R] possible bug with largest.cliques in igraph_0.6-3

2012-10-31 Thread Gábor Csárdi
Indeed this seems to be a bug, if the graph is directed. The workaround is to convert it to an undirected graph, the clique computation ignores direction anyway: library(igraph) adj <- matrix(1, nrow=11, ncol=11) - diag(11) g <- graph.adjacency(adj) largest.cliques(g) # [[1]] # [1] 10 8 1 # # [

[R] Subsetting year range

2012-10-31 Thread fuckecon
Hi, I have a panel data set that I am trying to subset. I am trying to keep values for years >=1960. The full set is from 1940 to 2000. I tried a few things, but none worked. Here are a couple that I am trying to use. TableAPS1 <- subset(TableAP, year => 1959) TableAPS1 <- TableAP[ which(year

[R] possible bug with largest.cliques in igraph_0.6-3

2012-10-31 Thread Christos Hatzis
There is a problem with the largest clique computation in the recent version of igraph. > library(igraph) > adj <- matrix(1, nrow=11, ncol=11) - diag(11) > g <- graph.adjacency(adj) > largest.cliques(g) [[1]] [1] 10 8 1 [[2]] [1] 9 7 1 [[3]] [1] 8 7 1 Warning message: In largest.cliques(g) :

[R] fitting weibull curve to data using nls

2012-10-31 Thread John.Morrongiello
Hi I'd like to fit an asymmetrical curve function to some physiological data. I've been told a weibull curve is a good place to start, but I'm having trouble specifying and fitting the function with nls and was wondering if someone could help. After some reading, I think the function specificat

Re: [R] boxplots of various levels

2012-10-31 Thread dysonsphere
WOW Richard. Nice. This really did the trick. I will continue to work at it to tweak things. This community is great. Thanks so much all of you. I am making it a priority to be rid of my noob status. Kenneth Stephen Dyson Chercheur postdoctoral Groupe de recherche sur le système nerveux central

Re: [R] how can xyplot word when with for control flow

2012-10-31 Thread yzh lin
Hi Heiberger, Thanks for your response. Tolfer had told me the answer, just use print () in the xyplot, and it works. Anyway thanks again. Best regards Yuanzhen Lin my data is shown as follow: > dump("tmp", "") tmp <- structure(list(x = c(1L, 2L, 3L, 4L, 5L, 1L, 2L, 3L, 4L, 5L, 1L, 2L, 3L, 4L,

Re: [R] how can xyplot word when with for control flow

2012-10-31 Thread Richard M. Heiberger
I made up some data since you didn't send your example. tmp <- data.frame(x=rep(1:10, 3), y=rnorm(30), Fam=rep(c("a","b","c"), each=10), Spacing=rep(c("A","B"), each=5, times=3)) xyplot(y ~ x | Fam, groups=Spacing, data=tmp, layout=c(3,1), aut

Re: [R] how can xyplot word when with for control flow

2012-10-31 Thread Rolf Turner
See FAQ 7.22. cheers, Rolf Turner On 01/11/12 12:09, yzh lin wrote: Hi everybody, I recently used xyplot, but I found that for control flow can't work in the xyplot. The program code and some of my data file are shown as follow. Would someone please tell me where my code is wrong

Re: [R] boxplots of various levels

2012-10-31 Thread Richard M. Heiberger
I would use bwplot in lattice for this example. library(lattice) library(latticeExtra) mydata$dtime <- factor(mydata$dtime) useOuterStrips(bwplot(BRCLNET ~ dtime | side * group, data=mydata, xlab="time")) On Wed, Oct 31, 2012 at 3:45 PM, Rui Barradas wrote: > Hello, > > Like this? > > > library

[R] how can xyplot word when with for control flow

2012-10-31 Thread yzh lin
Hi everybody, I recently used xyplot, but I found that for control flow can't work in the xyplot. The program code and some of my data file are shown as follow. Would someone please tell me where my code is wrong and how can make the code right? Thanks. Best regards Yuanzhen Lin Code: library

[R] ffdfindexget from package ff

2012-10-31 Thread Dave Mitchell
I'm having trouble getting ffdfindexget to work right in Windows. Even the most trivial of examples gives me problems. > myVec = ff(1:5) > another = ff(10:14) > littleFrame = ffdf(myVec, another) > posVec = ff(c(2, 4), vmode = 'integer') > ffdfindexget(littleFrame, posVec) Error in if (any(B < 1

Re: [R] gauss fit with outlier removal

2012-10-31 Thread Bert Gunter
See the CRAN "Robust" Task View (for better ways of doing what you want). -- Bert On Wed, Oct 31, 2012 at 2:26 PM, Dieter Best wrote: > I have distribution that are gaussian to a good approximation. I fit a > gaussian to these distributons. Once in a while there is an outlier. Could > someone su

[R] Clustering groups according to multiple variables

2012-10-31 Thread Matthew Ouellette
Dear R help, I am trying to cluster my data according to "group" in a data frame such as the following: df=data.frame(group=rep(c("a","b","c","d"),10),(replicate(100,rnorm(40 I'm not sure how to tell hclust() that I want to cluster according to the group variable. For example: dfclust=hc

[R] Clustering groups according to multiple variables

2012-10-31 Thread Matthew Ouellette
Dear R help, I am trying to cluster my data according to "group" in a data frame such as the following: df=data.frame(group=rep(c("a","b","c","d"),10),(replicate(100,rnorm(40 I'm not sure how to tell hclust() that I want to cluster according to the group variable. For example: dfclust=hc

[R] gauss fit with outlier removal

2012-10-31 Thread Dieter Best
I have distribution that are gaussian to a good approximation. I fit a gaussian to these distributons. Once in a while there is an outlier. Could someone suggest a robust method (R package already?) that removes those outliers and redoes the gaussian fit to get a better fit? Thanks. [[alte

Re: [R] expand.grip for permutations

2012-10-31 Thread trekvana
thank you both! that worked! -- View this message in context: http://r.789695.n4.nabble.com/expand-grip-for-permutations-tp4648067p4648076.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat

Re: [R] Σχετ: Σχετ: Swap rows and columns in a matrix

2012-10-31 Thread Rolf Turner
Okay; I think I get it. One (rather kludgy) way of accomplishing your goal is as follows: Let the two matrices which you want to check for being "isomorphic" be A and B. Do: rA <- apply(A,1,paste,collapse=" ") rB <- apply(B,1,paste,collapse=" ") cA <- apply(A,2,paste,collapse=" ") cB <- apply(

Re: [R] party tree coordinates

2012-10-31 Thread Achim Zeileis
On Wed, 31 Oct 2012, aelmore wrote: I'm hoping that folks out there with expertise in working with the party package can help me out here. My team is trying to convert party tree output into a text file format that can be read by our image processing software. We are running into difficulties

Re: [R] Cannot rescale a constant/zero column error.

2012-10-31 Thread Kevin Wright
Sounds like one of your data columns is constant. The variance of a constant is 0, and scaling would then divide by 0, which is impossible. Kevin Wright On Wed, Oct 31, 2012 at 7:47 AM, fillay89 wrote: > I am trying to run the R Script below, I have actually simplified it to > just > this par

Re: [R] expand.grip for permutations

2012-10-31 Thread William Dunlap
Instead of rep(drugs, block.size) use rep(list(drugs), block.size) as the argument to expand.grid. Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On > Behalf > Of trekvana > S

Re: [R] Problem Installing Packages

2012-10-31 Thread R. Michael Weylandt
On Wed, Oct 31, 2012 at 8:25 PM, David Winsemius wrote: > > On Oct 31, 2012, at 10:46 AM, Hard Core wrote: > >> I run R as administrator but when i try to install packages i get this >> message: >> >>> install.packages() >> Warning in install.packages : >> apertura non riuscita: stato HTTP '403 F

[R] Strange compiling behaviour

2012-10-31 Thread Worik R
Compiling this little function gets me some strange behaviour .initDataDir <- function(){ if(file.exists(LOCATION)) { if(as.logical(file.info(LOCATION)["isdir"]))return stop(LOCATION, " exists but is not a directory") } Z <- dir.create(LOCATION) if(!Z){ stop(geterrmessage()) ##

[R] Webinar signup: Gradient Boosting and Classification Trees: A Winning Combination. November 9, 10-11 a.m., PST

2012-10-31 Thread Lisa Solomon
Webinar signup: Tree Ensembles and Classification Trees: A Winning Combination November 9, 10-11 a.m., PST. Webinar Registration: http://2.salford-systems.com/gradientboosting/ Understand major shortcomings of using only decision trees and how tree ensembles can help overcome these challenges

[R] expand.grip for permutations

2012-10-31 Thread trekvana
if i were to have a block size of 4 people and i want to assign a treatment combination to the entire block, there would be 16 different treatment combinations (, TTTP, TTPP, PTTP, etc.) i am trying to get all 16 permutations and i am able to use this code below. drugs=c('P','T'); comb=expand

Re: [R] Lavaan model

2012-10-31 Thread yrosseel
On 10/31/2012 02:47 PM, sylvain.giroud wrote: Dear R-users, Does somebody know what does the "Estimate" reported by the Lavaan model tell us? I assume this tells the relative strength of the dyadic relations. The 'Estimate' column contains the estimated model parameters. There are many differe

Re: [R] Problem Installing Packages

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 10:46 AM, Hard Core wrote: > I run R as administrator but when i try to install packages i get this > message: > >> install.packages() > Warning in install.packages : > apertura non riuscita: stato HTTP '403 Forbidden' > Warning in install.packages : > apertura non riuscita

Re: [R] boxplots of various levels

2012-10-31 Thread Rui Barradas
Hello, Like this? library(ggplot2) set.seed(3101) mydata <- data.frame( BRCLNET = rnorm(1000), group = rep(c("1", "2"), each = 500), side = sample(c("Left", "Middle", "Right"), 1000, replace = TRUE) , dtime = rep(1:10, 100)) p <- ggplot(mydata , aes(factor(dtime), BRCL

Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-31 Thread arun
HI, May be this helps. dat1<-read.table(text="   TDate TTime    O3  No2 Temp Sun Wspeed Wdirect Hum Indicator 1    19980101  2400 0.065 0.036 31.4 765    9.9    351  NA    1 2    19980102  2400 0.053 0.025 31.8 624    7.7    351  NA    1 3    19980103  2400 0.027 0.033 31.5 852    8.8   

Re: [R] extracting information from txt file

2012-10-31 Thread Taimur Sajid
This worked for the example you provided. Assumes the header count is the only numeric value on the 5th line. epa_extract <- function(address){ doc <- readLines(address, n = 5)[5] head_count <- as.numeric(gsub("\\D", "", doc))

[R] Stock & Watson DOLS in R

2012-10-31 Thread Stephen Howe
Hi everyone, Longtime reader first time questioner. A colleague was showing me the EViews statistical package and demonstrating some of its regression capabilities--like DOLS--and commenting how easy it was to do certain kinds of regression. Being more of an R type, I went to try and replicate his

[R] predict glm() with offset

2012-10-31 Thread Lucas Chaparro
Dear R friends. I have a question about running a glm( family= 'binomial', *offset=T*), (I know offset is a vector of values) My doubt is about predicting the values on a new data. Does the predict() function considers the offset? o should I especified something? Here is the model I´m using: *mod

[R] party tree coordinates

2012-10-31 Thread aelmore
I'm hoping that folks out there with expertise in working with the party package can help me out here. My team is trying to convert party tree output into a text file format that can be read by our image processing software. We are running into difficulties because the way the two different progr

[R] Problem Installing Packages

2012-10-31 Thread Hard Core
I run R as administrator but when i try to install packages i get this message: > install.packages() Warning in install.packages : apertura non riuscita: stato HTTP '403 Forbidden' Warning in install.packages : apertura non riuscita: stato HTTP '403 Forbidden' Warning in install.packages : u

Re: [R] boxplots of various levels

2012-10-31 Thread dysonsphere
ok this is close, thanks for your effort i will be more specific about my data set now, maybe that will help. there are 2 cats, labeled rs29 and rs30 there are a number of experimental results, i will make a graph set for each one. for example we can look at the results of BRCLNET. the tasks are

Re: [R] extracting information from txt file

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 11:11 AM, David Winsemius wrote: > > On Oct 31, 2012, at 9:46 AM, chuck.01 wrote: > >> Hello, >> >> Here is a link to some data: >> http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt >> >> I am trying to read this in, and want to use: >> chmva

Re: [R] extracting information from txt file

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 9:46 AM, chuck.01 wrote: > Hello, > > Here is a link to some data: > http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt > > I am trying to read this in, and want to use: > chmval <- > read.table("http://www.epa.gov/emap/html/data/surfwatr/data/m

Re: [R] extracting information from txt file

2012-10-31 Thread jim holtman
Using na.string works better: > x <- > read.csv("http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt";, > skip=84, as.is = TRUE, na.string = '.') > str(x) 'data.frame': 711 obs. of 75 variables: $ ALDI: int NA NA NA NA NA NA NA NA NA NA ... $ ALDS: chr

Re: [R] extracting information from txt file

2012-10-31 Thread jim holtman
This worked fine for me: > x <- > read.csv("http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt";, > skip=84, as.is = TRUE) > str(x) 'data.frame': 711 obs. of 75 variables: $ ALDI: chr "." "." "." "." ... $ ALDS: chr "." "S" "S" "S" ... $ ALDSF : chr

Re: [R] standard error for quantile

2012-10-31 Thread Ted Harding
[see in-line below] On 31-Oct-2012 10:26:14 PIKAL Petr wrote: > Hi Ted > >> -Original Message- >> From: ted@deb [mailto:ted@deb] On Behalf Of Ted Harding >> Sent: Tuesday, October 30, 2012 6:41 PM >> To: r-help@r-project.org > > > >> >> The general asymptotic result for the pth quanti

Re: [R] extracting information from txt file

2012-10-31 Thread Rui Barradas
Hello, Use readLines instead. ?readLines # see argument 'n' readLines("http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt";, n = 5)[5] Hope this helps, Rui Barradas Em 31-10-2012 16:46, chuck.01 escreveu: Hello, Here is a link to some data: http://www.epa.gov

Re: [R] Snallball, rJava, and R 2.15.1

2012-10-31 Thread Ashton, Triss
Found the problem on this. This is a new computer and does not have Java installed. Loaded JDK and everything is working. Thanks. -Original Message- From: Pascal Oettli [mailto:kri...@ymail.com] Sent: Wednesday, October 31, 2012 10:15 AM To: Ashton, Triss Cc: r-help@r-project.org Su

[R] extracting information from txt file

2012-10-31 Thread chuck.01
Hello, Here is a link to some data: http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt I am trying to read this in, and want to use: chmval <- read.table("http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/wchem/chmval.txt";, sep=",", skip= 84, header=T)

Re: [R] grep txt file names from html

2012-10-31 Thread chuck.01
Sorry Sarah. I want to store them as a vector for use later. so, similar to this: links <- c("http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/benthic/benmet.txt";, "http://www.epa.gov/emap/html/data/surfwatr/data/mastreams/9396/location/watchr.txt";, "http://www.epa.gov/emap/htm

Re: [R] Mean Help

2012-10-31 Thread arun
Sure. set.seed(1)  dat1<-data.frame(Height=sample(150:180,12,replace=TRUE),EyeColor=rep(c("Green","Blue","Brown"),each=4)) dat1[,2]=="Blue" # [1] FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE FALSE # Returns a logical vector which checks whether each row of 2nd column of dat1

Re: [R] Mean Help

2012-10-31 Thread Hard Core
Dear Michael ... You're a genius thak you very much really thank you !!! It worked!!! -- View this message in context: http://r.789695.n4.nabble.com/Mean-Help-tp4648000p4648038.html Sent from the R help mailing list archive at Nabble.com. __ R-help@

Re: [R] Aggregate Table Data into Cell Frequencies

2012-10-31 Thread Rui Barradas
Hello, I'm not sure if this is what you want. aggregate(delayValue ~ id + Freq, data = sampleData, length) Hope this helps, Rui Barradas Em 31-10-2012 16:38, Edward Patzelt escreveu: > R-help - > > I have this set of aggregated tables (sample data below via dput()). And I > would like to hav

Re: [R] FW: replace repeated id in a pedigree list

2012-10-31 Thread Terry Therneau
> I use kinship package of R and it doesn't create a kinship matrix with repeated id. The kinship package is out of date, use the kinship2 and coxme packages (it was split into two parts). Then the problem you describe no longer exists -- the kinship function no longer requires each subject i

Re: [R] Aggregate Table Data into Cell Frequencies

2012-10-31 Thread Marc Schwartz
On Oct 31, 2012, at 11:38 AM, Edward Patzelt wrote: > R-help - > > I have this set of aggregated tables (sample data below via dput()). And I > would like to have delayValue as the column variables with the "temp" > (temp1, temp2, temp3) values as the row variables. However I would like to >

Re: [R] grep txt file names from html

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 9:56 AM, chuck.01 wrote: > Sorry, I know I should read a little 1st about this, but I am actually just > helping somebody really quick and need help too. > > I want to grep all of the names of the .txt files mentioned on this html web > page: > > http://www.epa.gov/emap/rem

[R] pseudo R-squared for model generated with spgm (splm)

2012-10-31 Thread Marion Jacquot
I am working with the splm package. I use the spgm function: general estimation of a panel data model. Based on this approach, I know it is possible to compute a R2, eg the ratio of variation explained by a given model. My model is : bivmod<-spgm(logIKA~NBLITRE0+NBLITRE1,data=mydatap,listw=coms

Re: [R] grep txt file names from html

2012-10-31 Thread Sarah Goslee
they're all of the form http.*txt but the best way to "grep" them (by which I assume you mean extract the file names from the page source) depends on what you plan to do with them, and what sort of output you expect. It isn't even clear whether you plan to do this in R. Sarah On Wed, Oct 31,

[R] Aggregate Table Data into Cell Frequencies

2012-10-31 Thread Edward Patzelt
R-help - I have this set of aggregated tables (sample data below via dput()). And I would like to have delayValue as the column variables with the "temp" (temp1, temp2, temp3) values as the row variables. However I would like to have the temp variables *aggregated into single rows* so that I hav

[R] grep txt file names from html

2012-10-31 Thread chuck.01
Sorry, I know I should read a little 1st about this, but I am actually just helping somebody really quick and need help too. I want to grep all of the names of the .txt files mentioned on this html web page: http://www.epa.gov/emap/remap/html/three/data/index.html Thanks ahead of time. -- Vi

Re: [R] Mean Help

2012-10-31 Thread R. Michael Weylandt
On Wed, Oct 31, 2012 at 4:31 PM, Hard Core wrote: > Thank you but with that formula i don't understand how R can select only the > one with blue eyes > Assuming you're referring to my proposal of aggregate(height ~ eyes, DATA, mean) It's not blue eyes only: that will summarize height for each e

Re: [R] bootstrapping quantile regression

2012-10-31 Thread David Freedman
A possiblie solution might be to use the survey package. You could specify that the data is clustered using the svydesign function, and then speciy the replicate weights using the as.svrepdesign function. And then, it would be possible to use the withReplicates function to bootstrap the clusters

Re: [R] Mean Help

2012-10-31 Thread Hard Core
Thank you but with that formula i don't understand how R can select only the one with blue eyes -- View this message in context: http://r.789695.n4.nabble.com/Mean-Help-tp4648000p4648030.html Sent from the R help mailing list archive at Nabble.com. _

Re: [R] Mean Help

2012-10-31 Thread Hard Core
Thank you ... can you explain what you've done? -- View this message in context: http://r.789695.n4.nabble.com/Mean-Help-tp4648000p4648013.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat

Re: [R] Filling a covariance matrix

2012-10-31 Thread emorway
Hi Joshua, The code you put together is very helpful. I have run into a small issue, however, and I am surprised you weren't getting similar error message when you tried running the nested for loops? As an example, I've pared down the for loop a bit to highlight the error message I'm getting (no

Re: [R] Cannot rescale a constant/zero column error.

2012-10-31 Thread Jason Fill
Sorry about that, this is my first time posting. Below is the complete post. I am trying to run the R Script below, I have actually simplified it to just this part that is causing issues. When I run this script I continue to get an error that says "cannot rescale a con

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread David Winsemius
> Adam Clark wrote: >>> I'll go ahead and dig through my C code. >> My problem was that I had a pointer (*Aest) that had less memory allocated >> to it than I ended up storing in it ... On Oct 31, 2012, at 9:04 AM, William Dunlap wrote: > As long as you use C (or C++ or Fortran ...), using me

Re: [R] Forward and backward algorithm in R?

2012-10-31 Thread Ingmar Visser
R-site search with 'forward backward' returns references to packages for fitting hidden Markov models. hth, Ingmar https://www.google.com/search?q=forward+backward&domains=r-project.org&sitesearch=r-project.org&btnG=Google+Search On Wed, Oct 31, 2012 at 3:50 PM, quantum wrote: > How can I wrti

Re: [R] From summary function to formula

2012-10-31 Thread Bert Gunter
?predict.xxx where xxx is either lm or glm, as I don't know what you mean by "general linear model." I also don't know what you mean by "summary function" but have assumed it's "fitted model." You need to read ?lm (or ?glm) carefully, and also follow some of the links therein. -- Bert On Wed, O

Re: [R] Snallball, rJava, and R 2.15.1

2012-10-31 Thread Ashton, Triss
No difference. R version 2.15.2 (2012-10-26) -- "Trick or Treat" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-w64-mingw32/x64 (64-bit) > chooseCRANmirror() > utils:::menuInstallPkgs() trying URL 'http://cran.stat.ucla.edu/bin/windows/contrib/2

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread William Dunlap
As long as you use C (or C++ or Fortran ...), using memory that you don't own is possible. This is one reason people use languages like R. (If you program microprocessors or write operating system code then C's willingness to let you read or write any at address is essential.) Bill Dunlap Spotfi

Re: [R] Cannot rescale a constant/zero column error.

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 5:47 AM, fillay89 wrote: > I am trying to run the R Script below, There is no script (or data description) appearing in this posting to the Rhelp Mailing List. Nabble is not Rhelp, despite Nabble's effort to get you to think it is an archive. Please review the Posting Guid

Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-31 Thread David Winsemius
On Oct 31, 2012, at 5:42 AM, Eugenie wrote: > tDate tTimeO3 No2 Temp Sun Wspeed Wdirect Hum Indicator > 119980101 2400 0.065 0.036 31.4 7659.9 351 NA 1 > 219980102 2400 0.053 0.025 31.8 6247.7 351 NA 1 > 319980103 2400 0.027 0.033 31.5 852

Re: [R] issues with krige function

2012-10-31 Thread Adrienne Wootten
Thierry, To answer your first question summary(casedata) station year monthday obs mpe Length:236 Min. :2011 Min. :8 Min. :28 Min. :0. Min. :0.0 Class :character 1st Qu.:2011 1st Qu.:8 1st Qu.:28 1st Qu

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread Adam Clark
Aha - got it. My problem was that I had a pointer (*Aest) that had less memory allocated to it than I ended up storing in it (e.g. I had *Aest = 1:100, but stored into it values at positions 5:105). With that fixed, all works flawlessly. Thanks a lot for the help. What I hadn't realized was that

Re: [R] Mean Help

2012-10-31 Thread Jessica Streicher
please provide a bit of the dataframe in the future using the dput() function > x<-data.frame(height=1:10, > color=sample(c("blue","green","brown"),10,replace=T)) > x height color 1 1 blue 2 2 green 3 3 blue 4 4 brown 5 5 blue 6 6 brown 7 7 green 8

Re: [R] HELP!! how to remove 10% of data randomly in R

2012-10-31 Thread Nordlund, Dan (DSHS/RDA)
> -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- > project.org] On Behalf Of Eugenie > Sent: Wednesday, October 31, 2012 5:42 AM > To: r-help@r-project.org > Subject: Re: [R] HELP!! how to remove 10% of data randomly in R > > tDate tTimeO3 No2 Tem

Re: [R] Snallball, rJava, and R 2.15.1

2012-10-31 Thread Prof Brian Ripley
You forgot to install a JRE (Java runtime). And please use R 2.15.2, which is current, if you are installing from scratch. Some packages built with 2.15.2 (e.g. Matrix) do not work with 2.15.[01]. rJava is on CRAN/rforge.net, not 'R-force' (sic). > PLEASE do read the posting guide http://w

Re: [R] Mean Help

2012-10-31 Thread R. Michael Weylandt
Many forms, but I'll recommend this one this time around: aggregate(height ~ eyes, DATA, mean) See ?aggregate for an explanation of what aggregate() does and ?formula for an explanation of the tilde syntax. Note that this assumes your column names are "height" and "eyes." Adjust as needed. Mich

Re: [R] Forward and backward algorithm in R?

2012-10-31 Thread R. Michael Weylandt
On Wed, Oct 31, 2012 at 2:50 PM, quantum wrote: > How can I wrtie and calculate alpha and beta in the forward backward > algorithm in R ? You might need to be more specific Here's a smattering of links you should probably look into as well: http://r-manuals.flakery.org/R-intro.html http://s

Re: [R] Snallball, rJava, and R 2.15.1

2012-10-31 Thread Pascal Oettli
Hello, It is said > In addition: Warning messages: > 1: package ‘lsa’ was built under R version 2.15.2 > 2: package ‘Snowball’ was built under R version 2.15.2 Install R 2.15.2 first. Regards, Pascal Le 31/10/12 23:29, Triss.Ashton a écrit : I just bought a new machine and installed the late

[R] gamlss mu.start vector ?

2012-10-31 Thread Abiologist
Dear All, I'd like to set up a loop whereby successive parameter values are used as start values in gamlss (yes I know this isn't usually necessary ! - unfortunately for my truncated data it is), to return the estimated parameters etc. giving the lowest AIC value. I notice that mu.start can take

[R] Forward and backward algorithm in R?

2012-10-31 Thread quantum
How can I wrtie and calculate alpha and beta in the forward backward algorithm in R ? -- View this message in context: http://r.789695.n4.nabble.com/Forward-and-backward-algorithm-in-R-tp4648012.html Sent from the R help mailing list archive at Nabble.com.

[R] From summary function to formula

2012-10-31 Thread LordSword
Hi there! I need to generate a final general linear model from a set of coefficients of the variables within the summary function. When I have the summary-function, HOW do I create a final model (response variable = bla bla bla)? LordSword -- View this message in context: http://r.789695.n4.n

[R] Mean Help

2012-10-31 Thread Hard Core
I have a dataframe. Let's suppose that i have two columns. The first one contains height, the second one contains eye color that can be Green, Blue or Brown. I want to calculate the aritmetic mean of the height only for those people who have Blue eyes. How can I do it? Thank you for your availabili

[R] Lavaan model

2012-10-31 Thread sylvain.giroud
Dear R-users, Does somebody know what does the "Estimate" reported by the Lavaan model tell us? I assume this tells the relative strength of the dyadic relations. Thank you for your help! Regards, Sylvain -- View this message in context: http://r.789695.n4.nabble.com/Lavaan-model-tp4648004.htm

[R] Cannot rescale a constant/zero column error.

2012-10-31 Thread fillay89
I am trying to run the R Script below, I have actually simplified it to just this part that is causing issues. When I run this script I continue to get an error that says "cannot rescale a constant/zero column to a unit variance". I cannot figure out what is going on here. I have stripped down m

[R] Snallball, rJava, and R 2.15.1

2012-10-31 Thread Triss.Ashton
I just bought a new machine and installed the latest release of R 2.15.1 two days ago. Loaded libraries yesterday (all reported successful loads). While running scripts, rJava and Snowball would not load. Here is Snowball successful install: > utils:::menuInstallPkgs() trying URL 'http://cran.

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread Adam Clark
Thanks for the advice. I'll go ahead and dig through my C code. It's helpful to know that my C code can cause R to crash AFTER successfully implementing the code. I have made sure to account for C's vector indexing, and I think I'm allocating my C memory, and passing information back and forth be

Re: [R] issues with krige function

2012-10-31 Thread ONKELINX, Thierry
Dear Adrienne, What is the output of summary(casestudy) and summary(gridmeta)? What happens if you set nmax to 10? krige(formula=bias~1,locations=~lon+lat,data=casedata,newdata=gridmeta ,model=v.fit, nmax = 10) ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for

[R] Mixed modelling course with R in Portugal

2012-10-31 Thread Highland Statistics Ltd
We would like to announce the following statistics course: Introduction to linear mixed effects modelling course with R. 11 - 15 February 2013. Lisbon, Portugal. For details, see: http://www.highstat.com/statscourse.htm Course flyer: http://www.highstat.com/Courses/Flyer2013FebSIM_Lisbon.pdf

Re: [R] bootstrapping quantile regression

2012-10-31 Thread Frank Harrell
A piece of this is solved by the rms package's Rq and bootcov functions. -Frank Roger Koenker-3 wrote > There is no automatic "clustering" option for QR bootstrapping. > You will have to roll your own. > > > url:www.econ.uiuc.edu/~rogerRoger Koenker > email > rkoenker@ >

Re: [R] issues with krige function

2012-10-31 Thread Adrienne Wootten
My apologies to all, the package is gstat that I am using not geoR. thanks! A On Tue, Oct 30, 2012 at 1:35 PM, Adrienne Wootten wrote: > Greetings all, > > Ran into a strange problem with the krige function from geoR. The > problem that I am having is that while the krige function seems to > wor

Re: [R] standard error for quantile

2012-10-31 Thread Roger Koenker
The rank test inversion option that you are trying to use won't work with only one coefficient, and therefore with univariate quantiles, if you use summary(rq(rnorm(50) ~ 1, tau = .9), cov = TRUE) you will have better luck. url:www.econ.uiuc.edu/~rogerRoger Koenker emailrkoen.

Re: [R] bootstrapping quantile regression

2012-10-31 Thread Roger Koenker
There is no automatic "clustering" option for QR bootstrapping. You will have to roll your own. url:www.econ.uiuc.edu/~rogerRoger Koenker emailrkoen...@uiuc.eduDepartment of Economics vox: 217-333-4558University of Illinois fax: 217-244-66

Re: [R] aggregate.formula: formula from string

2012-10-31 Thread arun
Hi Thorn, May be it is a bug in aggregate.formula().  Not sure about it. The solutions that I gave and yours were returning the colnames as NA.  I guess this should be much better in terms of getting the result in one step.  do.call(aggregate,list(mF,d,mean)) #  a b   y   z #1

Re: [R] aggregate.formula: formula from string

2012-10-31 Thread Thaler,Thorn,LAUSANNE,Applied Mathematics
Dear Arun, Thanks for your suggestion, that does the trick. Just because I'm curious, where does the problem come from? I figured that wrapping the formula object in brackets would work as well: aggregate((mF), d, mean) So I guess it has something to do with the scope of mF, or what is the roo

Re: [R] box() doesnt work

2012-10-31 Thread John Kane
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example John Kane Kingston ON Canada > -Original Message- > From: cat...@bas.ac.uk > Sent: Tue, 30 Oct 2012 10:27:29 -0700 (PDT) > To: r-help@r-project.org > Subject: [R] box() doesnt work > > Hi, > > when

Re: [R] aggregate.formula: formula from string

2012-10-31 Thread arun
Hi, Try this: res<- aggregate(eval(mF),d,mean) res #  a b  NA  NA #1 1 A -1.48354978 -0.37141485 #2 2 A -0.08862713  0.35359250 #3 3 A  1.17519518 -0.47595290 #4 1 B  0.10214686 -0.70005131 #5 2 B  0.41185154  0.03707291 #6 3 B  0.20507062 -0.67946389 res1<-aggregate(cbind(y, z)

Re: [R] boxplots of various levels

2012-10-31 Thread John Kane
I am not sure I understand exactly what you want but does this do anything like what you want? library(ggplot2) mydata <- data.frame(result = rnorm(100), group = rep(c("1", "2"), each = 50), side = sample(c("L", "R"), 100, replace = TRUE) , dtime = rep(1:10, each=10))

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread Prof Brian Ripley
On Wed, 31 Oct 2012, Duncan Murdoch wrote: On 12-10-30 11:13 PM, Adam Clark wrote: I'm running R 2.15.1x64, though the same problem persists for 2.13.0x32 and 2.13.0x64. I am trying to run compiled C code using the .C convention. The code compiles without problems, dynamically loads within the

Re: [R] R crashing after successfully running compiled code

2012-10-31 Thread Duncan Murdoch
On 12-10-30 11:13 PM, Adam Clark wrote: I'm running R 2.15.1x64, though the same problem persists for 2.13.0x32 and 2.13.0x64. I am trying to run compiled C code using the .C convention. The code compiles without problems, dynamically loads within the R workspace with no problems, and even runs

Re: [R] "NA-friendly" operator

2012-10-31 Thread R. Michael Weylandt
On Wed, Oct 31, 2012 at 10:54 AM, vincent guyader wrote: > > yes, it could be a solution, but i prefer a "simple" operator.. so i will > build one. See this thread for both advice and pitfalls: https://stat.ethz.ch/pipermail/r-help/2012-June/316240.html Michael Weylandt _

[R] RCurl - curlPerform - Time out?!?

2012-10-31 Thread Florian Umlauf (CRIE)
Hi, I am working with the RCurl package and I am using the curlPerform function for an soap-query. The problem is that the code is usually working well, but sometimes the connection gets lost. So I wrote a while-loop to repeat the query if anything might happened so that the same query runs a

Re: [R] invalid labels; length 2 should be 1 or 0

2012-10-31 Thread rachel.cole
I had the same problem, but found this note in the MICE package documentation (at http://cran.r-project.org/web/packages/mice/mice.pdf): Added June 25, 2012: The currently implemented algorithm does not handle predictors that are specified as fixed effects (type=1). When using mice.impute.2l.norm(),

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