Re: [R] Variate

Dear Mc kay, thankyou very much for your reply. we are extremly greatful to you. we actually wanted all on one scale. we want to compare them all on one axis. kindle see if you could help us on that. one more thing, does this practice give us normal reduced variant on x-axis because we stricktl

Re: [R] Legend colors not matching with Intxplot line colors

Hi Richard, Thanks for the solution. A.K. From: Richard M. Heiberger To: arun Sent: Monday, June 4, 2012 1:47 AM Subject: Re: [R] Legend colors not matching with Intxplot line colors Thank you for catching that.  I will repair it in the next version of HH

[R] Re : Error while trying to install RPostgreSQL.

Hello, You got the detail of the error: RS-PostgreSQL.h:23:26: fatal error: libpq-fe.h: No such file or directory compilation terminated. Please searc on Internet "libpq-fe.h". You will get answer to your problem. Regards - Mail original - De : Prakash Thomas À : r-help@r-project.or

[R] Error while trying to install RPostgreSQL.

Hi, I am getting the following error while trying to install RPostgreSQL. I tried all three methods(install.packages("RPostgreSQL", type = "source"),install.packages("RPostgreSQL") & R CMD INSTALL RPostgreSQL_0.3-1.tar.gz ) , but none of them is working. ++ Error+++

Re: [R] R 15.0 Warning message.

At last, the administrator provide me this command to fix this problem. echo "setenv LC_ALL en_US.UTF8" >> ~/.cshrc.aliases On Sun, Jun 3, 2012 at 5:47 PM, peter dalgaard wrote: > > On Jun 3, 2012, at 11:36 , Prof Brian Ripley wrote: > >>> >>> ls -ld /usr/share/locale/en_US* >>> drwxr-xr-x 2 r

[R] Plotting with Rgraphviz

Hi All, After a lengthy battle just to get the package installed, I am not able to actually use Rgraphviz to generate any plots. I tried just using the sample code in the documentation (http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/rgraphviz/) and I get the following: *> >

Re: [R] Fwd: Rgraphviz installation problem

Martin -- I know this is about a year late, but I have to thank you for taking the time to answer Ram's question in this thread. It helped me get Rgraphviz up and running. I've been struggling with this for about 90 minutes, so thank you so much! And to anyone else who may run upon this thread

Re: [R] Modify pdf file with Illustrator.

ggplot2 handles all of these requirements. I highly recommend using it for composite figures. Try the grid.arrange() and arrangeGrob in the 'gridExtra' package in addition to ggplot2. On Mon, Jun 4, 2012 at 1:08 AM, Uwe Ligges wrote: > > > On 03.06.2012 17:03, Jinyan Huang wrote: > >> Thank you.

[R] Rexcel question

I am using the worksheet functions of RExcel. I am trying to pass a datatable to a function in the following call: =RApply(O14:O18,D6) Cells O14:O18 contain the definition of the function. This is a function that takes one argument which is a data.table. Cell D6 has the name of the data.table

[R] Dummies guide to getting HPC working on R

R-folks. Sorry for the cross-posting, but I wanted to share a link to a (fairly long) blog post I created which tries to take the mystery out of getting R setup for doing high performance/parallel computing if you have to compile R from scratch: http://lostingeospace.blogspot.com/2012/06/r-and-hp

Re: [R] a question about subsetting

HI, I am not sure about whether your subset function is correct.  If you look into this link (http://stat.ethz.ch/R-manual/R-devel/library/base/html/subset.html), it says about how to use subset (subset(data, condition) instead of (subset=data==condition).  Also, the one I am describing about u

[R] Separate Array Variable Content

Hi Antony, I am sending this message again as it was not yet posted by the rhelp.   One more solution: dat2<-read.table(text="  ABC PQR XYZ  42  29  22  65  22  78       10  20  30  40  50  60  70  80  90  61  15  24   ",sep="",header=T) exprv <- expression(c( ABC>10 & XYZ <30 & PQR <90,AB

[R] Legend colors not matching with Intxplot line colors

Dear R help, I am using intxplot() from the library(HH).  I have a dataset with 12 treatment groups.  At first, I tried intxplot with no color settings.  Then, the legend color was matching with the plot line colors, but some of the colors were repeated.  So, I set the colors using par.settings

Re: [R] Modify pdf file with Illustrator.

Thank you for your suggestion. Do you have some example codes using ggplot2 or grid.arrange() and arrangeGrob to composite figures? On Mon, Jun 4, 2012 at 7:36 AM, Neil Collier wrote: > ggplot2 handles all of these requirements. I highly recommend using it for > composite figures. Try the gri

Re: [R] Variate

Hi Eliza You will not want 1 panel with 96 lines - too confusing after about 20 Instead 1 per panel or with groups using useOuterStrips and combineLimits from latticeExtra package Try this -- a minimal example with an 12 row 8 col grid done on the fly setseed(12) Sites <- 1:92 dat <- data.

[R] Variate

Dear R users, We are working on a project called,”Environmental Impact Assessment”. We are stationed at alpine regions of Ireland to see the impact of rainfall on localities. We have divided our study area into 92 stations. We have also collected 1 year data from each station. Afterwards we p

Re: [R] regsubsets (Leaps)

On Sat, Jun 2, 2012 at 3:19 AM, farmedgirl wrote: > Hi > i need to create a model from 250 + variables with high collinearity, and > only 17 data points (p = 250, n = 750). I would prefer to use Cp, AIC, > and/or BIC to narrow down the number of variables, and then use VIF to > choose a model with

[R] CRAN (and crantastic) updates this week

CRAN (and crantastic) updates this week New packages * anametrix (0.1) Maintainer: Roman Jugai Author(s): Roman Jugai License: LGPL http://crantastic.org/packages/anametrix Connects to Anametrix API and extracts data into R data structure * assertive (0.1-4) Maintainer:

Re: [R] Problems installing Packages

I'm not really an expert on BLAS-y things, but wouldn't there be more problems upstream with R if it weren't able to find the local BLAS? I was under the impression that R shipped it's own BLAS but could also be directed to one at compile time -- either way, I would guess that many other would brea

Re: [R] fine control of plots after use of layout(matrix ...

Thank you. Sent from my iPad On 04/06/2012, at 7:12 AM, Sarah Goslee wrote: > On Sun, Jun 3, 2012 at 5:02 PM, Matthew Johnson wrote: >> Thanks. The solution i have been persuing is reading Murrell - and >> trying to figure out grid / Viewport commands. Is it best to stay in >> the base graphic

Re: [R] package grid: mirror grob objects along an axis

Hi, Another option that you might want to try is the tikzDevice package; tikz has functions to flip and rotate objects and could it from R with tikzAnnotate / tikzAnnotateGrob. Of course these objects would not really be grobs but tikz code, though for text the end result would probably be the sam

Re: [R] fine control of plots after use of layout(matrix ...

On Sun, Jun 3, 2012 at 5:02 PM, Matthew Johnson wrote: > Thanks. The solution i have been persuing is reading Murrell - and > trying to figure out grid / Viewport commands. Is it best to stay in > the base graphics package if possible? It really depends on what you need to do. Your original examp

Re: [R] fine control of plots after use of layout(matrix ...

Thanks. The solution i have been persuing is reading Murrell - and trying to figure out grid / Viewport commands. Is it best to stay in the base graphics package if possible? Sent from my iPad On 04/06/2012, at 6:20 AM, Sarah Goslee wrote: > On Sun, Jun 3, 2012 at 4:05 PM, Matthew Johnson wrot

[R] Dummies guide to getting HPC working on R

R-folks: Sorry for the cross-posting, but I wanted to share a link to a (fairly long) blog post I created which tries to take the mystery out of getting R setup for doing high performance/parallel computing if you have to compile R from scratch: http://lostingeospace.blogspot.com/2012/06/r-and-hp

Re: [R] merging single column from different dataframe

On Jun 3, 2012, at 3:22 PM, Kai Mx wrote: Hi all, probably really simple to solve, but having no background in programming I haven't been able to figure this out: I have two dataframes like df1 <- data.frame(names1=c('aa','ab', 'ac', 'ad'), var1=c(1,5,7,12)) df2 <- data.frame(names2=c('aa',

Re: [R] package grid: mirror grob objects along an axis

My question was answered off list by Paul Murrell, author of 'grid'. Here's am excerpt of our email exchange for the records of R-help. Paul Murrell In some special cases, you would be able to "flip" shapes. If the coordinates of the shapes are given in "native" coordinates,

Re: [R] fine control of plots after use of layout(matrix ...

On Sun, Jun 3, 2012 at 4:05 PM, Matthew Johnson wrote: > Thanks. So i can call par after the layout command? I did not realise. Some par options are set by calling par() directly, while others must be included in the plot command itself. Sarah > Sent from my iPad > > On 03/06/2012, at 9:42 PM,

Re: [R] community finding in a graph and heatplot

Hmm interesting. To come to think of it there could be many disconnected components in the graph and thus there should be a generic way to either mitigate the disconnectedness in the dendrogram or in the original graph. I had no luck in finding such a trick though google search. I then ran the

Re: [R] merging single column from different dataframe

Hello, One way, with limited applicability, would be df4 <- cbind(df2, var1=NA) df4$var1[ df2$names2 %in% df1$names1 ] <- df1$var1 df4 Limited because it doesn't resist to duplicate key values (the columns names1/2). But with unique keys it should be much more efficient, speed- and memory-wi

Re: [R] plotting evolution of dates

On Jun 3, 2012, at 9:27 AM, stef salvez wrote: Dear R users, I have the following problem I have a panel data across countries and individuals. For each country I have a sequence of dates For France for example 22/02/09 22/03/09 19/04/09 17/05/09 12/07/09 09/08/09 06/09/09 04/10/09 01/11/09 2

[R] merging single column from different dataframe

Hi all, probably really simple to solve, but having no background in programming I haven't been able to figure this out: I have two dataframes like df1 <- data.frame(names1=c('aa','ab', 'ac', 'ad'), var1=c(1,5,7,12)) df2 <- data.frame(names2=c('aa', 'ab', 'ac', 'ad', 'ae'), var2=c(3,6,9,12,15)) N

Re: [R] Partial R-square in multiple linear regression

On Fri, Jun 1, 2012 at 2:05 PM, Jin Choi wrote: > Hello, > > I am trying to obtain the partial r-square values (r^2 or R2) for > individual predictors of an outcome variable in multiple linear > regression. I am using the 'lm' function to calculate the beta > coefficients, however, I would like to

[R] memory usage benefit from "anonymous" variable constructions.

This is an "I was just wondering" question. When the package "dataframe" was announced, the author claimed to reduce the number of times a data frame was copied, I started to wonder if I should care about this in my projects. Has anybody written a general guide for how to write R code that doesn'

Re: [R] Problems installing Packages

The error says you are missing the BLAS library... so install it? --- Jeff NewmillerThe . . Go Live... DCN:Basics: ##.#. ##.#. Live Go...

Re: [R] mgcv (bam) very large standard error difference between versions 1.7-11 and 1.7-17, bug?

Dear useRs, I've ran some additional analyses (see below), which strongly suggest the standard errors of the bam (and gam) function are much too low in mgcv version 1.7-17, at least when including an s(X,bs="re") term. Until this issue has been clarified, it's perhaps best to use an older version

Re: [R] reduced variate in R

Hello, Try scale(x) Half of homework done. The other half is to have a quick look at R-intro.pdf, it comes with every installation of R. Chapters 8 and 12. Hope this helps, Rui Barradas Em 03-06-2012 18:15, eliza botto escreveu: thankyou very much for answer. i want to calculate normal r

Re: [R] reduced variate in R

thankyou very much for answer. i want to calculate normal reduced variate of a matix consisting of 366 rows and 92 columns. how can i do that?? please reply if you know the answer.. eliza > Subject: Re: [R] reduced variate in R > From: pda...@gmail.com > Date: Sun, 3 Jun 2012 19:11:55 +0200 >

Re: [R] reduced variate in R

On Jun 3, 2012, at 17:57 , eliza botto wrote: > > Dear R users, > is there a way in R to calculate normal reduced variate?? Yes. It depends on what you mean, though. AFAICT "reduced" is just what others call "standard normal" (mean 0, variance 1), so rnorm(n, 0, 1) is one answer; z <- (X - m

Re: [R] Log-normal probability plot

On Jun 2, 2012, at 9:38 PM, eliza botto wrote: You might consider the strategy of reading the Posting Guide, followed by posting an intelligible message. Dear R users, You can literally safe my life my telling me the solution of my problem. I have created matrix of a data frame with 3 c

Re: [R] a question about subsetting

Hi jacaranda, Try with(subset(mydata, Group1 == 1), cor.test(Gen, MSELEL, method = "pearson")) HTH, Jorge.- On Sun, Jun 3, 2012 at 11:51 AM, jacaranda tree <> wrote: > Hi all, > I started using R about 3 weeks ago, and now I've pretty much figured out > how to do the types of statistical mode

Re: [R] Adding a column into the file

On Jun 1, 2012, at 4:08 PM, David Winsemius wrote: On Jun 1, 2012, at 12:27 PM, pigpigmeow wrote: Dear all, I have a lot of problems on R-programming. for example my csv. file is .. That certainly does not look like any csv file I have ever seen. Date wrfRH wrfsolar wrfw

[R] reduced variate in R

Dear R users, is there a way in R to calculate normal reduced variate?? eliza [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLE

[R] Multiple imputation, multinomial response & random effects

Dear R-group, Could somebody recommend a package that can deal with a multinomial response variable (choice of breeding tactic in mice, which has four unordered levels), multiply-imputed data (generated using the Amelia package) and two non-nested random effects: individual identity (133 indivi

[R] plotting evolution of dates

Dear R users, I have the following problem I have a panel data across countries and individuals. For each country I have a sequence of dates For France for example 22/02/09 22/03/09 19/04/09 17/05/09 12/07/09 09/08/09 06/09/09 04/10/09 01/11/09 29/11/09 27/12/09 31/01/10 For Italy 14/06/09 12/07

[R] a question about subsetting

Hi all, I started using R about 3 weeks ago, and now I've pretty much figured out how to do the types of statistical modeling, graphs, tables etc. that I frequently   use (with zero background in computer languages or other statistical packages that are similar to R like S or SAS!). So it's been

Re: [R] Bug in truncgof package?

Dear Carlos, Duncan and everyone You may have already sorted the matter by now, but since I have not seen anything posted since Duncan's reply, here I go. I apologize in advance for the spam, if it turns out I've missed some post. I think the test and the implementation of the truncgof package ar

[R] pre-clinical results analysis in R using the function 'aov'

Hi. I hope someone could help me with my question. I have clinical scores of a longitudinal study: 4 treatments. In each treatment j there are nj different subjects that were measured few times (of course for each subject the measurements are dependent during time). I want to check it with ANOVA

Re: [R] How can I export a paired t-test output table to an excel file?

If you wish to use the table in a write-up or something like this, there is a package for exporting to MS Word - see http://cran.r-project.org/web/packages/R2wd/index.html http://cran.r-project.org/web/packages/R2wd/index.html and these examples http://thebiobucket.blogspot.co.at/2012/04/reprod

[R] Problems installing Packages

Hello, I am going through Zhao's RDataMining PDF, and to redo all the graphics on my computer, I need several packages, 'coin' and 'party' to name two. I get the following error: > install.packages("coin") Installing package(s) into ‘/home/sven/R/i686-pc-linux-gnu-library/2.15’ (as ‘lib’ is uns

[R] Regions of significance plots with ggplot2

I'd like to create a plot similar to this one from Kochanska et al. (Development and Psychopathology, 2011): http://pages.videotron.com/do999/r-help/Kochanska_graph_ros.jpg I am new to ggplot2 and can't see any obvious way t

Re: [R] Partial R-square in multiple linear regression

On Jun 3, 2012, at 17:00 , Uwe Ligges wrote: > > > On 01.06.2012 21:05, Jin Choi wrote: >> Hello, >> >> I am trying to obtain the partial r-square values (r^2 or R2) for >> individual predictors of an outcome variable in multiple linear >> regression. I am using the 'lm' function to calculate

Re: [R] How to make a transaction class data?

On 01.06.2012 20:08, jasminedawn wrote: Hi, I have encounter a problem that my data a_data.frame is of data.frame class with columns: sequenceID, eventID, items. when I convert it to transaction class: as(a_data.frame, "transactions") All columns are grouped together under items, which is

Re: [R] Memory-random forest

On 02.06.2012 16:11, MYRIAM TABASSO wrote: Hi all, I am working with random forest on the large data set( 39). I have a warning message : "In matrix(integer(nrnodes * nt), ncol = nt) : Reached total allocation of 3766Mb: see help(memory.size)". Can you have any suggestions? Use anther met

Re: [R] Modify pdf file with Illustrator.

On 03.06.2012 17:03, Jinyan Huang wrote: Thank you. 1, I want to put some text and title. Then put several figures into one. So just do it within R and use title() within R and use par() and its argument mfrow to arrange several figures in rows and columns. Uwe Ligges On Sun, Jun 3, 2

Re: [R] Compare data between two groups/countries on 5-point Likert scale questionnare?

This is the R-help mailing list. It is not a statistical consulting list nor the "others write my thesis" list. On 02.06.2012 14:56, Frankfoot wrote: Hi everyone, I'm stuck on my dissertation which is due next week. Interesting. The question given below should arise two years before the dis

Re: [R] Modify pdf file with Illustrator.

Thank you. 1, I want to put some text and title. Then put several figures into one. On Sun, Jun 3, 2012 at 10:59 PM, Uwe Ligges wrote: > > > On 03.06.2012 08:42, Jinyan Huang wrote: >> >> Dear list, >> >> Some times I want to modify the pdf file which produced by R with >> illustrator. But when

Re: [R] Partial R-square in multiple linear regression

On 01.06.2012 21:05, Jin Choi wrote: Hello, I am trying to obtain the partial r-square values (r^2 or R2) for individual predictors of an outcome variable in multiple linear regression. I am using the 'lm' function to calculate the beta coefficients, however, I would like to know the individua

Re: [R] Modify pdf file with Illustrator.

On 03.06.2012 08:42, Jinyan Huang wrote: Dear list, Some times I want to modify the pdf file which produced by R with illustrator. But when I use Illustrator open the pdf file, it often makes the pdf some little changed. Anyone have some suggestions? Is it better to use other file type, not pd

Re: [R] About "Plot.new"

Perhaps not at all, since you are posting to the R-help list rather than to the original poster of the question. You also forgot to quote the original question as the posting guide asks you to do. Uwe Ligges On 03.06.2012 08:12, czar wrote: @mr.parashar4 - If this not resolved yet, here is

Re: [R] R 2.15.0 and 2.14.2 crash on the same code that runs on 2.14.1

Since this appears to be Windows (not explicitly said), the likely change is the compilers used for R >= 2.14.2 differ from those used for 2.14.1. The posting guide does ask for 'at a minimum' information with good reason. How big the change was depends on whether this was 32- or 64-bit Windo

Re: [R] community finding in a graph and heatplot

The problem is that your graph is unconnected, it has two components and the as.dendrogram() function in igraph cannot handle that. fastgreedy.community() returns a matrix of merges that is not a complete dendrogram, the final top level merge of the components is missing. A workaround is to modify

Re: [R] R 2.15.0 and 2.14.2 crash on the same code that runs on 2.14.1

On 03.06.2012 09:17 (UTC+2), peter dalgaard wrote: On Jun 3, 2012, at 07:40 , Ebrahim Jahanshiri wrote: Dear list, My code runs on 2.14.1 smoothly (with no error) but makes R crash on 2.14.2 and 2.15.0 with the usual windows message about "R for windows GUI front-end has stopped working..." a

Re: [R] R 15.0 Warning message.

On Jun 3, 2012, at 11:36 , Prof Brian Ripley wrote: >> >> ls -ld /usr/share/locale/en_US* >> drwxr-xr-x 2 root root 4096 Dec 15 15:19 /usr/share/locale/en_US > > This is clearly not an R issue: so ask your IT support for help. Or check out the Ubuntu docs/forums for information on which packag

Re: [R] R 15.0 Warning message.

On 03/06/2012 10:31, Jinyan Huang wrote: locale locale: Cannot set LC_CTYPE to default locale: No such file or directory locale: Cannot set LC_ALL to default locale: No such file or directory LANG=en_US.UTF-8 LANGUAGE= LC_CTYPE=UTF-8 That's wrong: see the manual I pointed you to! LC_NUMERIC="

Re: [R] R 15.0 Warning message.

locale locale: Cannot set LC_CTYPE to default locale: No such file or directory locale: Cannot set LC_ALL to default locale: No such file or directory LANG=en_US.UTF-8 LANGUAGE= LC_CTYPE=UTF-8 LC_NUMERIC="en_US.UTF-8" LC_TIME="en_US.UTF-8" LC_COLLATE="en_US.UTF-8" LC_MONETARY="en_US.UTF-8" LC_MESSA

Re: [R] R 15.0 Warning message.

On Jun 3, 2012, at 10:27 , Jinyan Huang wrote: > Yes. I think it is my environment variables problem. But I donot know > how to fix. > > echo $LC_ALL > > echo $LANG > en_US.UTF-8 > > > On Sun, Jun 3, 2012 at 4:07 PM, Prof Brian Ripley > wrote: >> LANG First, use "locale" to check that the

Re: [R] mtext bug

On 12-06-02 8:42 PM, Matthew Johnson wrote: Sir, I am now having a similar problem with the barplot: i cannot get the margin text to 'stick'. png(paste(drive, "MoMUnit.png", sep="")) par(mar=c(10, 3, 2, 2), opar=(1,0,0,0)) I think "opar" is a typo. Duncan Murdoch mainnameUnit = expression(

Re: [R] R 15.0 Warning message.

On 03/06/2012 09:27, Jinyan Huang wrote: Yes. I think it is my environment variables problem. But I donot know how to fix. That is described in the same manual. echo $LC_ALL echo $LANG en_US.UTF-8 On Sun, Jun 3, 2012 at 4:07 PM, Prof Brian Ripley wrote: LANG No, that's not what I wrote

Re: [R] R 15.0 Warning message.

Yes. I think it is my environment variables problem. But I donot know how to fix. echo $LC_ALL echo $LANG en_US.UTF-8 On Sun, Jun 3, 2012 at 4:07 PM, Prof Brian Ripley wrote: > LANG __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/l

Re: [R] Add a dim to an array

Hello again, Sorry, I've misread your post and thought that you wanted the new dim to have 'low' and 'high' values. It's just 'low'. So dim=c(2, 2, 2, 1) and set dn$group to the first value only. And forget the final comments. Rui Barradas Em 03-06-2012 07:31, Rui Barradas escreveu: Hello,

[R] fine control of plots after use of layout(matrix ...

Sir, I would like to create a combined line-bar plot, with the line up top and bar plot below, but with the x-axes suppressed on the topmost plot, the line and bar plot areas joined by a common line, and the x-axes (of dates) joined to the bottom part of the bar plot. i have been able to format t

Re: [R] R 15.0 Warning message.

On 03/06/2012 07:34, Jinyan Huang wrote: Dear list, I have install R15.0 on Ubuntu system using the source code. It is install to my home directory. I have no root privilege. When I start R, I got this warning message: During startup - Warning message: Setting LC_CTYPE failed, using "C" How c

Re: [R] R 2.15.0 and 2.14.2 crash on the same code that runs on 2.14.1

Thank you very much. Memory problem or heat (of CPU?) is the main suspect here for me. But how is it that 2.14.1 can run it but others can not I dont know (maybe some mechanisms that prevent memory problem in 2.14.1 are not working in the latest versions. One thing for sure is that the speed of lo

Re: [R] R and igraph problems

On Jun 2, 2012, at 15:43 , jalantho...@verizon.net wrote: > Why is igraph 0.5.5 not on the igraph sourceforgwe home page? You'll have to ask the igraph developers... Possibly, they just ran out of "round tuits". -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School S

Re: [R] R 2.15.0 and 2.14.2 crash on the same code that runs on 2.14.1

On Jun 3, 2012, at 07:40 , Ebrahim Jahanshiri wrote: > Dear list, > > My code runs on 2.14.1 smoothly (with no error) but makes R crash on 2.14.2 > and 2.15.0 with the usual windows message about "R for windows GUI > front-end has stopped working..." and as such I dont have any access to R > to