Re: [R] Namibia becoming NA

2010-07-17 Thread Joshua Wiley
Hi Suresh, I think you will need to use read.table() rather than the read.csv() wrapper for it. Try: input <- read.table(file = "padded.csv", sep = ",", header = TRUE, na.strings = NULL) HTH, Josh On Sat, Jul 17, 2010 at 10:47 PM, Suresh Singh wrote: > I have a data file in which one of the

[R] Namibia becoming NA

2010-07-17 Thread Suresh Singh
I have a data file in which one of the columns is country code and NA is the code for Namibia. When I read the data file using read.csv, NA for Namibia is being treated as null or "NA" How can I prevent this from happening? I tried the following but it didn't work input <- read.csv("padded.csv",h

[R] loop troubles

2010-07-17 Thread Joe P King
Hi all, I appreciate the help this list has given me before. I have a question which has been perplexing me. I have been working on doing a Bayesian calculating inserting studies sequentially after using a non-informative prior to get a meta-analysis type result. I created a function using three it

Re: [R] Help with a problem

2010-07-17 Thread Joshua Wiley
Hi Michael, The days in your example do not look continuous (at least from my thinking), so you may have extra requirements in mind, but take a look at this code. My general thought was first to turn each column into a logical vector (c1 >= 100 and c2 >= 8). Taking advantage of the fact that R t

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Ista Zahn
On Sat, Jul 17, 2010 at 9:03 PM, Peter Dalgaard wrote: > Ista Zahn wrote: >> Hi, >> On Fri, Jul 16, 2010 at 5:18 PM, CC wrote: >>> I am sure this is a very basic question: >>> >>> I have 600,000 categorical variables in a data.frame - each of which is >>> classified as "0", "1", or "2" >>> >>> Wh

Re: [R] slplot issue

2010-07-17 Thread Dennis Murphy
In which package would one find slplot? It's not in any of the 1800+ packages on my system... Dennis On Sat, Jul 17, 2010 at 1:28 PM, Shawn Way wrote: > In a prior life I was able to use slplot can change the xlim and ylim such > that the ellipse was a perfect circle. It seems that the xlim an

Re: [R] save plot

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 14:52 -0400, linda.s wrote: > > Open a new device before plotting, do your plotting, close the device. > > > > For example, using a PDF device via pdf(): > > > > pdf("my_plots.pdf", height = 8, width = 8, pointsize = 10, > >version = "1.4", onefile = TRUE) > > for(i in 1:1

Re: [R] plot month and year

2010-07-17 Thread Gabor Grothendieck
On Sat, Jul 17, 2010 at 2:41 PM, linda.s wrote: > The X axis on the plot now starts from 2008.0; Since the data starts > from January 2008, can I make it 2008.1, and also show 2009.12 on the > axis? See the example of a fancy X axis in this post: http://www.mail-archive.com/r-help@r-project.o

Re: [R] plot month and year

2010-07-17 Thread Dennis Murphy
Hi: I'm a little more familiar with ggplot2 than zoo for graphing multivariate time series, so my response is based on that bias. On Sat, Jul 17, 2010 at 11:41 AM, linda.s wrote: > i am a beginner and tried to provide a reproducible example. is the > following style a correct one? > It's beaut

Re: [R] Help with a problem

2010-07-17 Thread Michael Hess
Sorry for not being clear. In the dataset there are around 100 or so days of data (in the case also rows of data) I need to make sure that the person meets that c1 is at least 100 AND c2 is at least 8 for 5 of 7 continuous days. I will play with what I have and see if I can find out how to do

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Phil Spector
Please look at Peter Dalgaard's response a little more carefully. There's a big difference between the levels= argument (which must be unique) and the labels= argument (which need not be). Here are two ways to do what you want: d = 0:2 factor(d,levels=0:2,labels=c('0','1','1')) [1] 0 1 1 l

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Phil Spector
An alternative using the base reshape function: one = reshape(accuracy,idvar='Subject',varying=list(c(2,3,4),c(5,6,7),c(8,9,10)), direction='long',timevar='shape') two = reshape(one,idvar=c('Subject','shape'),varying=list(3:5), direction='long',timevar='color') two$sh

Re: [R] how to collapse categories or re-categorize variables?

2010-07-17 Thread Peter Dalgaard
Ista Zahn wrote: > Hi, > On Fri, Jul 16, 2010 at 5:18 PM, CC wrote: >> I am sure this is a very basic question: >> >> I have 600,000 categorical variables in a data.frame - each of which is >> classified as "0", "1", or "2" >> >> What I would like to do is collapse "1" and "2" and leave "0" by its

Re: [R] Help with a problem

2010-07-17 Thread Stephan Kolassa
Mike, I am slightly unclear on what you want to do. Do you want to check rows 1 and 7 or 1 *to* 7? Should c1 be at least 100 for *any one* or *all* rows you are looking at, and same for c2? You can sort your data like this: data <- data[order(data$ds),] Type ?order for help. But also do this

Re: [R] sort file names in numerical order

2010-07-17 Thread Michael Hannon
> I get some file names by list.files(). > These names are in alphabetical order. > I want to change it to logical numeric order. > Example: > > fileNames <- c("A10", "A1", "A2", "B1", "B2", "B10") > > sort(fileNames) > [1] "A1" "A10" "A2" "B1" "B10" "B2" > I want to have: > "A1" "A2" "A1

[R] slplot issue

2010-07-17 Thread Shawn Way
In a prior life I was able to use slplot can change the xlim and ylim such that the ellipse was a perfect circle. It seems that the xlim and ylim are no longer supported by the slplot function. Any thoughts on how I can change this? Thank you kindly, -

Re: [R] Help with a problem

2010-07-17 Thread RICHARD M. HEIBERGER
Michael, This will get you started. What you are doing with the seven rows isn't clear from your description. I made the dates into "Date" objects. I called your data "mydata" as "data" is potentially ambiguous. Rich mydata <- read.table(header=TRUE, textConnection(" ds c1 c2 1 2

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Jeff Newmiller
Try this: library(reshape) accuracy <- structure(list(Subject = c(101L, 102L, 103L, 104L, 105L, 106L ), CircleBlue = c(95L, 80L, 80L, 85L, 70L, 70L), CircleRed = c(100L, 90L, 70L, 80L, 75L, 75L), CircleGreen = c(100L, 100L, 95L, 100L, 95L, 75L), SquareBlue = c(95L, 85L, 90L, 90L, 70L, 40L), Squa

[R] Error installing tkrplot

2010-07-17 Thread Jay-pea
Hi, I've been trying to install tkrplot and have been coming across this error. Loading required package: tcltk Loading Tcl/Tk interface ... Error : .onLoad failed in loadNamespace() for 'tcltk', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared library '/L

Re: [R] Regarding accesing R- Repositories at servers

2010-07-17 Thread Uwe Ligges
On 13.07.2010 09:42, venkatesh bandaru wrote: Dear R-help team , I am venkatesh, student of University of Hyderabad, India. I couldn't able to access R-repositories at Your specified servers.It is giving error such as " Couldn't able to access media". It would be helpful to see what you d

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread John L. Woodard
Hi Tal, Here is the output as you requested: structure(list(Subject = c(101L, 102L, 103L, 104L, 105L, 106L ), CircleBlue = c(95L, 80L, 80L, 85L, 70L, 70L), CircleRed = c(100L, 90L, 70L, 80L, 75L, 75L), CircleGreen = c(100L, 100L, 95L, 100L, 95L, 75L), SquareBlue = c(95L, 85L, 90L, 90L, 70L, 40L),

Re: [R] save plot

2010-07-17 Thread Uwe Ligges
On 17.07.2010 20:52, linda.s wrote: Open a new device before plotting, do your plotting, close the device. For example, using a PDF device via pdf(): pdf("my_plots.pdf", height = 8, width = 8, pointsize = 10, version = "1.4", onefile = TRUE) for(i in 1:10) { y<- rnorm(100) x<- rno

Re: [R] save plot

2010-07-17 Thread linda.s
> Open a new device before plotting, do your plotting, close the device. > > For example, using a PDF device via pdf(): > > pdf("my_plots.pdf", height = 8, width = 8, pointsize = 10, >    version = "1.4", onefile = TRUE) > for(i in 1:10) { >    y <- rnorm(100) >    x <- rnorm(100) >    plot(y ~ x)

Re: [R] plot month and year

2010-07-17 Thread linda.s
i am a beginner and tried to provide a reproducible example. is the following style a correct one? Thanks. > dput(unem) > structure(list(a = c(10.2, 9.8, 9.5, 8.3, 7.9, 8.8, 8.9, 9.3, + 9.2, 9, 9.5, 12, 15.7, 16.1, 15.4, 14.7, 13.9, 15.3, 15.4, 15, + 13.8, 13.9, 14.1, 15.8), b = c(7, 6.7, 6.8, 6.1

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Tal Galili
Hi John, Try posting a sample of your data in reply to this e-mail by using: dput(head(accuracy)) And me (or someone else) will be sure to fix your command. Regarding the ANOVA, read more :) Tal Contact Details:--- Contact

[R] Help with a problem

2010-07-17 Thread Michael Hess
Hello R users, I am a researcher at the University of Michigan looking for a solution to an R problem. I have loaded my data in from a mysql database and it looks like this > data ds c1 c2 1 2010-04-03100 0 2 2010-04-30 11141 15 3 2010-05-01 3

Re: [R] cca in ade4

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 13:31 +0800, elaine kuo wrote: > Dear List, > > I used spec and envi for cca in ade4. (both are data.frame) > > However, there is a message telling that > error in if (nf > rank) nf <- rank R > missing value in TRUE/FALSE > > Please kindly help how to modify the code below

Re: [R] data.frame required for cca in ade4

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 13:15 +0800, elaine kuo wrote: > Dear List, > > I tried to conduct cca using csv data but failed. > The message said that data.frame is required. > > Please kindly share how to convert a csv-imported file to a data.frame. > Thank you. It was a dataframe. You aren't giving a

Re: [R] cca in vegan (formula instead of community matrix data)

2010-07-17 Thread Gavin Simpson
On Sat, 2010-07-17 at 12:44 +0800, elaine kuo wrote: > Dear List, > > I tried to do cca based on species data and environmental variables (formula > instead of community data). > However, there was an error saying row sums must be >0. > I searched the previous related messages but found few soluti

Re: [R] save plot

2010-07-17 Thread Gavin Simpson
On Fri, 2010-07-16 at 11:17 -0400, linda.s wrote: > I made a plot, but after I made a second plot, the previous plot was > gone. How can I save all the plots in a file (I do not manually copy > and paste them one by one)? > Thanks. > Linda [I presume you addressed this to Duncan Murdoch for a good

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread Uwe Ligges
On 17.07.2010 12:39, skan wrote: Thank you very much, I'll try it. About my question on graphics with colour... Imagine I have a function y=y(x1, x2, x3), I'd need four dimensions to graph x1, x2, x3, and y. My idea is to use the typical 3D plot adding the information of the additional fourt

Re: [R] Identify points (was Plot error)

2010-07-17 Thread Peter Ehlers
On 2010-07-17 9:50, James Platt wrote: The other question I have: Is there any way to link the data point on the graph to the name of a row i.e in my table: name value_1 value_2 bill 14 ben 2 2 jane 3 1 I click on the data point at 2,2 and it wou

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread jlwoodard
Tal, Thanks for the information. I actually did read through the help for the reshape package, though being relatively new to R, I don't quite understand the ins and outs of the command. I tried using the melt command: x<-melt(accuracy,id='Subject') but, it didn't give me anything different

Re: [R] Bug 14340 - Symbols() plots with wrongly scaled y-axis

2010-07-17 Thread baptiste auguie
Hi, try adding asp=1 in symbols() to set the aspect ratio of the plotting region to 1. HTH, baptiste On 17 July 2010 18:21, wrote: > Hello, I submitted this bug report to r-core and got a rejection saying I > should post to r-help. > This is my first time ever submitting a bug report, so for

Re: [R] RWinEdt and WinEdt 6.0

2010-07-17 Thread Uwe Ligges
On 15.07.2010 16:45, Christopher Desjardins wrote: Hi, I am curious if the status of RWinEdt and WinEdt 6.0 has changed since this thread http://r.789695.n4.nabble.com/RWinEdt-in-WinEdt-6-td2174285.html Unfortunately not due to lack of time. But planned for the summer. Uwe Thanks for the

Re: [R] Send code to R from WinEdt55

2010-07-17 Thread Uwe Ligges
On 15.07.2010 16:42, YANG, Richard ChunHSi wrote: R Gurus: This sounds not a FAQ. I upgraded WinEdt from 5.4 to 5.5 , following load RWinEdt, R-WinEdt editor appears. There are more menu items and task icons in this version, but I failed to find a pull down menu or task icon to send co

[R] Bug 14340 - Symbols() plots with wrongly scaled y-axis

2010-07-17 Thread nancynyk
Hello, I submitted this bug report to r-core and got a rejection saying I should post to r-help. This is my first time ever submitting a bug report, so forgive me if I'm using some wrong format. So, here's my bug report: Component: Graphics OS: Mac OS 10.5.8, X11 XQuartz 2.5.0 Summary: In th

[R] Computing the power of a matrix efficiently and accurately

2010-07-17 Thread Miguel Lacerda
Good day, I would like to know if there is an efficient and accurate method for computing the power of a tridiagonal matrix in R? The "obvious" method would be eigen-decomposition, but I find that this is not very accurate, probably because the dimensions of the matrix I am considering are large a

Re: [R] Multinomial logistic regression in complex surveys

2010-07-17 Thread Joshua Wiley
I would take a look at mlogit() in package mlogit or vglm() with family = multinomial in package VGAM. HTH, Josh 2010/7/16 Rosario Austral : > Dear R-list members, > I´m using the package "survey" and I need to find a function for > multinomial logistic regression in a complex design. The functi

Re: [R] Help with Reshaping from Wide to Long

2010-07-17 Thread Tal Galili
Hi John, 1) Read the help for the "reshape" package. What you want is to use the "melt" function. 2) There are various ways of doing Repeated measures Anova in R, you might want to have a look at this: http://www.r-statistics.com/2010/04/repeated-measures-anova-with-r-tutorials/ (I especially lik

Re: [R] Plot error

2010-07-17 Thread James Platt
The other question I have: Is there any way to link the data point on the graph to the name of a row i.e in my table: name value_1 value_2 bill 14 ben 2 2 jane 3 1 I click on the data point at 2,2 and it would read out ben thanks again. James

Re: [R] Plot error

2010-07-17 Thread James Platt
Hi both, Sorry my mistake I was trying to make a graph from another file I called seq, I decided to use test as an example, but mixed up the two. I have got this to work now thanks. after doing this: #Assign columns to variables 'x' and 'y' x <- test[ , "value_1"] y <- test[ , "value_2"]

[R] Help with Reshaping from Wide to Long

2010-07-17 Thread jlwoodard
I am trying to reshape data that are in the wide format into the long format. The design is a repeated-measures design, which combined 3 levels of shape (circle, square, triangle) with 3 levels of color (Blue, Red, Green), for a total of 9 variables. The wide data look like this (sorry I couldn'

Re: [R] how to comment off sections

2010-07-17 Thread Erik Iverson
On 07/17/2010 01:05 AM, Joshua Wiley wrote: I use XEmacs + ESS, and looking for ways to add text to a region of code, I see it is quite easy with C-x r t. Thanks for your great advice. I use GNU Emacs. With a region of code actve, M-; will add the comment line (or remove it if it's already

Re: [R] Plot error

2010-07-17 Thread Joshua Wiley
Hi James, I believe the issue has to do with the values you assigned to 'x' and 'y'. You call the function c() on seq["value_1"], but you assigned your data not to 'seq' but to 'test'. You need to use the variable name that you assigned your data to (as a side note seq() is a function, so you sh

Re: [R] Plot error

2010-07-17 Thread Ista Zahn
Hi James, On Sat, Jul 17, 2010 at 2:50 PM, James Platt wrote: > Hi guys, > > I am a newbie to R, so apologies in advance. > > I created this simple table in excel, saved in tab delimited .txt: > > name value_1 value_2 > 1 bill       1            4 > 2 ben      2           2 > 3 jane     3        

[R] Plot error

2010-07-17 Thread James Platt
Hi guys, I am a newbie to R, so apologies in advance. I created this simple table in excel, saved in tab delimited .txt: name value_1 value_2 1 bill 14 2 ben 2 2 3 jane 3 1 >test <-read.table("\path\to\file", sep="\t", header=TRUE) >x <-c(seq["v

Re: [R] sort file names in numerical order

2010-07-17 Thread Sebastian Gibb
thanks a lot, it works. you wrote: > library(gtools) > ?mixedorder > > --- On Sat, 7/17/10, Sebastian Gibb wrote: > > From: Sebastian Gibb > > Subject: [R] sort file names in numerical order > > To: r-help@r-project.org > > Received: Saturday, July 17, 2010, 4:31 AM > > Hello, > > > > I get so

Re: [R] installing and loading packages

2010-07-17 Thread Roman Luštrik
What are your user permission on the PC where you're working? -- View this message in context: http://r.789695.n4.nabble.com/installing-and-loading-packages-tp887190p2292385.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-pro

Re: [R] installing and loading packages

2010-07-17 Thread Jeff Newmiller
I don't think there"most". It is normal to have to call the "library" function for each package you need devices to during an R session. "chakri_amateur" wrote: > >In my Windows XP, I just have to load package every time I open R, but not >Install !! > >There must be some problem during instal

Re: [R] installing and loading packages

2010-07-17 Thread chakri_amateur
In my Windows XP, I just have to load package every time I open R, but not Install !! There must be some problem during installation ! Chakri -- View this message in context: http://r.789695.n4.nabble.com/installing-and-loading-packages-tp887190p2292339.html Sent from the R help mailing list

[R] ed50

2010-07-17 Thread Dipa Hari
Dr. Ruben Rao Thanks for your reply .But I don't know that how should I reparameterise the model.can you reply me in detail for reparameterization and taylor series for delta method . Thanks   --- On Tue, 7/13/10, Rubén Roa wrote: From: Rubén Roa Subject: RE: [R] ed50 To: "Dipa Hari" , r-he

Re: [R] sort file names in numerical order

2010-07-17 Thread Gabor Grothendieck
On Sat, Jul 17, 2010 at 4:31 AM, Sebastian Gibb wrote: > Hello, > > I get some file names by list.files(). > These names are in alphabetical order. > I want to change it to logical numeric order. > Example: >> fileNames <- c("A10", "A1", "A2", "B1", "B2", "B10") >> sort(fileNames) > [1] "A1"  "A10

Re: [R] sort file names in numerical order

2010-07-17 Thread John Kane
library(gtools) ?mixedorder --- On Sat, 7/17/10, Sebastian Gibb wrote: > From: Sebastian Gibb > Subject: [R] sort file names in numerical order > To: r-help@r-project.org > Received: Saturday, July 17, 2010, 4:31 AM > Hello, > > I get some file names by list.files(). > These names are in al

[R] Adjustment for multiple-comparison for log-rank test

2010-07-17 Thread Marco Barbàra
DeaR experts, I was asked for a log-rank pairwise survival comparison. I've a straightforward way to do this using the SAS system: http://support.sas.com/documentation/cdl/en/statug/63033/HTML/default/viewer.htm#/documentation/cdl/en/statug/63033/HTML/default/statug_lifetest_sect019.htm What

[R] re. Mathematica and R

2010-07-17 Thread Alan Kelly
David - information on calling R from within Mathematica can be found at the following link: http://www.mofeel.net/1164-comp-soft-sys-math-mathematica/13022.aspx HTH, Alan Kelly __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread skan
Thank you very much, I'll try it. About my question on graphics with colour... Imagine I have a function y=y(x1, x2, x3), I'd need four dimensions to graph x1, x2, x3, and y. My idea is to use the typical 3D plot adding the information of the additional fourth variable 'y to the colour of the po

Re: [R] how to comment off sections

2010-07-17 Thread Peter Dalgaard
Joshua Wiley wrote: > I use XEmacs + ESS, and looking for ways to add text to a region of > code, I see it is quite easy > with C-x r t. Thanks for your great advice. or even M-x comment-region M-x uncomment-region These are commonly bound to C-c ; (because of LISP heritage), but not in (my ver

Re: [R] SOLVED - export tables to excel files on multiple sheets with titles for each table

2010-07-17 Thread eugen pircalabelu
Hello R-users, I was able using RExcel and the VBA script offered by Eric Neuwirth (modifying it a little bit) to import dataframes on separate Excel sheets, each with its own particular title. As such the problem is solved. Thank you all for your suggestions. Have a nice day ahead! Eugen

[R] sort file names in numerical order

2010-07-17 Thread Sebastian Gibb
Hello, I get some file names by list.files(). These names are in alphabetical order. I want to change it to logical numeric order. Example: > fileNames <- c("A10", "A1", "A2", "B1", "B2", "B10") > sort(fileNames) [1] "A1" "A10" "A2" "B1" "B10" "B2" I want to have: "A1" "A2" "A10" "B1" "B2" "B1

Re: [R] multivariate graphs, averaging on some vars

2010-07-17 Thread Dennis Murphy
Hi: On Fri, Jul 16, 2010 at 3:44 PM, skan wrote: > > Hello > > I have a table of this kind: > > functionx1 x2 x3 > 2.232 1 1 1.00 > 2.242 1 1 1.01 > 2.732 1 1 1.02 > 2.770 1 2 1.00 > 1.932

Re: [R] Access web content from within R

2010-07-17 Thread Bart Joosen
Thanks Henrique, that does the trick!!! Bart -- View this message in context: http://r.789695.n4.nabble.com/Access-web-content-from-within-R-tp2289953p2292181.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org maili