Re: [R] Problem with factors in lm() when using Rscript but not GUI

2010-03-22 Thread Prof Brian Ripley
Soemone broke contrasts<- in 2.10.0 to require the 'methods' package, but this was corrected in R-patched on Jan 4. Thus you need to add 'methods' to the default packages in Rscript (see its help) or update your R. This has come up before, so a search of the archives was likely to have found

Re: [R] plotrix 2.8-4

2010-03-22 Thread Jim Lemon
On 03/23/2010 01:16 PM, rtist wrote: Hi, And thanks for the great package. I was using it to output a color table map for a financial returns matrix. I like that the fact that I can output a table of values with corresponding colors, which I was asking about on an earlier thread. Any way to ge

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Ray Brownrigg
On Tue, 23 Mar 2010, Jim Lemon wrote: > On 03/23/2010 10:23 AM, Ray Brownrigg wrote: > > ... > > > > How about less than 2 seconds? [And 500 points in less than 15 seconds - > > on a 2-year-old DELL Optiplex GX755.] > > > > The implementation below (at end) loops over all 'feasible' pairs of x > >

Re: [R] Summing with NA

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 9:51 PM, tj wrote: Hi all, May I request for your help if you have time and if you have an idea on how to do this. I want to add three vectors... And my goal is to obtain the sum of the vectors, ignoring the vector of "na"... Here is what i did in R.. I'm adding the

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Frank E Harrell Jr
A fast Fortran solution may be found by: require(Hmisc) ?largest.empty Frank Ray Brownrigg wrote: On Tue, 23 Mar 2010, Hans W Borchers wrote: Barry Rowlingson lancaster.ac.uk> writes: On Mon, Mar 22, 2010 at 4:28 PM, Hans W Borchers googlemail.com> wrote: Still I believe that a clever app

Re: [R] Summing with NA

2010-03-22 Thread stephen sefick
k <- c(NA, NA) z <- c(-12, -9) e <- c(-2,0) sum(na.omit(c(z, e, k))) Will this do the trick? Why are you summing in a sum() sum(k+z+e) On Mon, Mar 22, 2010 at 8:51 PM, tj wrote: > > Hi all, > May I request for your help if you have time and if you have an idea on how > to do this.  I want to a

Re: [R] filled.contour formatting questions

2010-03-22 Thread Jim Lemon
On 03/23/2010 12:48 PM, John K. Williams wrote: Hello, I'm having some trouble getting things to look as I want with filled.contour. 1. My first issue is that I am unable to add line segments to my plot where I want them. Using the rug pattern example: x<- y<- seq(-4*pi, 4*pi, len = 27); r<- s

Re: [R] Create NA

2010-03-22 Thread stephen sefick
I think you don't need to multiply... you need to figure out where your NAs need to be and then index the vector and assign "NA" to it: x[1:5] <- "NA" On Mon, Mar 22, 2010 at 8:05 PM, tj wrote: > > Hi, > > How can I create an NA? > for example, i have this program but it has errors > >> x=scan()

Re: [R] Create NA

2010-03-22 Thread Jorge Ivan Velez
Hi tj, May be the following? x <- 1:5 NA*x rep(NA, length(x)) HTH, Jorge On Mon, Mar 22, 2010 at 9:05 PM, tj <> wrote: > > Hi, > > How can I create an NA? > for example, i have this program but it has errors > > > x=scan() > 1: 1 2 3 4 5 > 6: > Read 5 items > > "na"*x > Error in "na" * x : n

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Jim Lemon
On 03/23/2010 10:23 AM, Ray Brownrigg wrote: ... How about less than 2 seconds? [And 500 points in less than 15 seconds - on a 2-year-old DELL Optiplex GX755.] The implementation below (at end) loops over all 'feasible' pairs of x values, then selects the largest rectangle for each pair, su

Re: [R] summary.formula and continuous variables

2010-03-22 Thread Frank E Harrell Jr
Erik Iverson wrote: Hello, I am using the summary.formula function in the Hmisc package to produce tables. With the "method" argument set to "response", the help says, "Continuous independent variables (see the ‘continuous’ parameter below) are automatically stratified into ‘g’ (see below)

[R] Summing with NA

2010-03-22 Thread tj
Hi all, May I request for your help if you have time and if you have an idea on how to do this. I want to add three vectors... And my goal is to obtain the sum of the vectors, ignoring the vector of "na"... Here is what i did in R.. I'm adding the three vectors, e,z,k, and my objective is to ge

[R] Add title to color spectrum legend in xyplot

2010-03-22 Thread Nick Ackerman
Hi, I have a plot that is essentially the same as that in Figure 5.6 of "Lattice - Multivariate Data Visualization with R". The key difference is that I would like to add a title to top of the grey color spectrum legend, but have thus far been unsuccessful. I've tried a variety of options, but to

[R] Create NA

2010-03-22 Thread tj
Hi, How can I create an NA? for example, i have this program but it has errors > x=scan() 1: 1 2 3 4 5 6: Read 5 items > "na"*x Error in "na" * x : non-numeric argument to binary operator what should I multiply x so that I will get an NA? And I really need to multiply that with my x vector.

Re: [R] plotrix 2.8-4

2010-03-22 Thread rtist
Hi, And thanks for the great package. I was using it to output a color table map for a financial returns matrix. I like that the fact that I can output a table of values with corresponding colors, which I was asking about on an earlier thread. Any way to get each box to have a dark black line b

Re: [R] using reorder in dotplot

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 9:51 PM, Veerappa Chetty wrote: Hi, Please help to correct my error in the following. I want to plot the values of 'x" in increasing order. --- library(lattice) Name<-c("A","B","C") x<-c(15,20,10) test<-data.frame(Name,x) dotplot(Name~x,tes

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Ray Brownrigg
Sorry, minor tweak to the algorithm in line 16 (thanks Barry). Looks better now (at end again). Ray On Tue, 23 Mar 2010, Ray Brownrigg wrote: > On Tue, 23 Mar 2010, Hans W Borchers wrote: > > Barry Rowlingson lancaster.ac.uk> writes: > > > On Mon, Mar 22, 2010 at 4:28 PM, Hans W Borchers > > >

Re: [R] help needed with boxplot

2010-03-22 Thread Jim Lemon
On 03/23/2010 01:11 AM, kathy_BJ wrote: I am new to R, can anyone help with boxplot for a dataset like: file1 col1 col2 col3 col4 col5 050350005 101 56.625 48.318 RED 051010002 106 50.625 46.990 GREEN 051190007 25 65.875 74.545 BLUE 051191002 246 52.875 57.070 RED 220050004 55 70 80.274 BLUE 220

Re: [R] ctable error with Hmisc and Sweave (on a Mac)

2010-03-22 Thread Sharpie
Clay Heaton wrote: > > Hi, pretty new with R and LaTeX here... > > I'm trying to use the latex() function from the Hmisc table with Sweave. > When I try: > > pdflatex myfile.tex > > I get an error that reads: > > ! Undefined control sequence. > l.22 \ctable > > > It seems like this is an o

Re: [R] ctable error with Hmisc and Sweave (on a Mac)

2010-03-22 Thread Marc Schwartz
On Mar 22, 2010, at 8:31 PM, Rolf Turner wrote: > > On 23/03/2010, at 12:35 PM, Clay Heaton wrote: > >> Hi, pretty new with R and LaTeX here... >> >> I'm trying to use the latex() function from the Hmisc table with Sweave. >> When I try: >> >> pdflatex myfile.tex >> >> I get an error that r

Re: [R] Problem with factors in lm() when using Rscript but not GUI

2010-03-22 Thread Paul Rustomji
Found the solution - already posted here http://n4.nabble.com/Rscript-question-td1067729.html#a1067729 Basically Rscript does not automatically load library(methods) like Rgui does... -- View this message in context: http://n4.nabble.com/Problem-with-factors-in-lm-when-using-Rscript-but-not-GU

[R] plotrix 2.8-4

2010-03-22 Thread Jim Lemon
Hi all, Partly in response to a request for a filled triangular plot, analogous to image (but more like color2D.matplot), I have uploaded a new version of plotrix. There is now a triax.fill function that displays such a plot. I am particularly interested in comment on this as I have more or le

[R] using reorder in dotplot

2010-03-22 Thread Veerappa Chetty
Hi, Please help to correct my error in the following. I want to plot the values of 'x" in increasing order. --- library(lattice) Name<-c("A","B","C") x<-c(15,20,10) test<-data.frame(Name,x) dotplot(Name~x,test) dotplot(reorder(Name,x)~x,test) "reorder" has no effect

[R] filled.contour formatting questions

2010-03-22 Thread John K. Williams
Hello, I'm having some trouble getting things to look as I want with filled.contour. 1. My first issue is that I am unable to add line segments to my plot where I want them. Using the rug pattern example: x <- y <- seq(-4*pi, 4*pi, len = 27); r <- sqrt(outer(x^2, y^2, "+")); filled.contour(cos(r

Re: [R] ctable error with Hmisc and Sweave (on a Mac)

2010-03-22 Thread Rolf Turner
On 23/03/2010, at 12:35 PM, Clay Heaton wrote: > Hi, pretty new with R and LaTeX here... > > I'm trying to use the latex() function from the Hmisc table with Sweave. When > I try: > > pdflatex myfile.tex > > I get an error that reads: > > ! Undefined control sequence. > l.22 \ctable > > >

Re: [R] Decreasing Cumsum Function?

2010-03-22 Thread Rolf Turner
On 23/03/2010, at 2:02 PM, Gundala Viswanath wrote: > Hi all, > > I have a frequency data that looks like this. > > 3 > 2 > 1 > 5 > > What I want to get is the "decreasing" cumulative of this data > yielding > > 11 > 8 > 6 > 5 > 0 > > Is there any? > > I am aware of cumsum(), which will yie

Re: [R] ctable error with Hmisc and Sweave (on a Mac)

2010-03-22 Thread Erik Iverson
Clay Heaton wrote: Hi, pretty new with R and LaTeX here... I'm trying to use the latex() function from the Hmisc table with Sweave. When I try: pdflatex myfile.tex I get an error that reads: ! Undefined control sequence. l.22 \ctable What does your function call to latex look like? I di

Re: [R] Decreasing Cumsum Function?

2010-03-22 Thread Charles Annis, P.E.
how about sum(X) - cumsum(X) Charles Annis, P.E. charles.an...@statisticalengineering.com 561-352-9699 http://www.StatisticalEngineering.com -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of Gundala Viswanath Sent: Monday, March

[R] Decreasing Cumsum Function?

2010-03-22 Thread Gundala Viswanath
Hi all, I have a frequency data that looks like this. 3 2 1 5 What I want to get is the "decreasing" cumulative of this data yielding 11 8 6 5 0 Is there any? I am aware of cumsum(), which will yield 3 5 6 11. But it is not what I want. - G.V. __

[R] 4th R/Rmetrics Summer School and User/Developer Meeting

2010-03-22 Thread Diethelm Wuertz
Second Announcement www.rmetrics.org *** Rmetrics 2010 *** 4th R/Rmetrics Summer School and User/Developer Meeting on "Computational Finance and Financial Engineering", Meielisalp, Lake Thune Switzerland, June 27 - July 1, 2010 The Summer School and User/Develope

[R] Problem with factors in lm() when using Rscript but not GUI

2010-03-22 Thread Paul.Rustomji
Hello R-help I am having a curious problem. I am using a batch file to call an R script and am getting an error when performing a lm() fit using factorial data only when running in batch mode (see below). I do not get the error when executing the same code in GUI mode in R 2.10.1. Nor do I g

[R] ctable error with Hmisc and Sweave (on a Mac)

2010-03-22 Thread Clay Heaton
Hi, pretty new with R and LaTeX here... I'm trying to use the latex() function from the Hmisc table with Sweave. When I try: pdflatex myfile.tex I get an error that reads: ! Undefined control sequence. l.22 \ctable It seems like this is an optional package for Tex that I haven't installed? M

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Ray Brownrigg
On Tue, 23 Mar 2010, Hans W Borchers wrote: > Barry Rowlingson lancaster.ac.uk> writes: > > On Mon, Mar 22, 2010 at 4:28 PM, Hans W Borchers > > > > googlemail.com> wrote: > > > Still I believe that a clever approach might be possible avoiding the > > > need to call a commercial solver. I am gett

Re: [R] Distance between lines

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 6:11 PM, Janmaat, John wrote: Hello, I'm trying to assess the similarity of two lines that are represented as points (output of differential equation solvers). Is there a function or a package that deals with things like this? I think that "things like this" (and "li

Re: [R] Embed R code in C++

2010-03-22 Thread Sharpie
mans wrote: > > Hi thanks for your help but > > I tried to install the pakage but i have got a installing error: > > {SNIP} > > I do not understand what's going on to be honest. > Anyone can help me? > When debugging, it's usually a good idea to start with the first error: Error in loadN

Re: [R] swutching rows to columns

2010-03-22 Thread Ista Zahn
Hi JR, t(EmpCo) gives what you want. See ?t for details. You can also do this with reshape: library(reshape) EmpCo$Label <- rownames(EmpCo) recast(EmpCo, variable ~ Label, measure.var=c("TRN", "TRN_CLUST")) but in this case t() seems a bit quicker and easier. -Ista On Mon, Mar 22, 2010 at 6:

Re: [R] using reorder in "dotplot"

2010-03-22 Thread Dennis Murphy
Hi: Is this what you are after? (df is the data frame name) library(lattice) dotplot(reorder(Name, rate) ~ rate, data = df) HTH, Dennis On Mon, Mar 22, 2010 at 2:17 PM, Veerappa Chetty wrote: > Hi , > Name > rate > > HEALTHALLIANCE HOSPITALS, INC

Re: [R] Embed R code in C++

2010-03-22 Thread mans
Hi thanks for your help but I tried to install the pakage but i have got a installing error: nstalling to library ‘/Library/Frameworks/R.framework/Resources/library’ * installing *source* package ‘RInside’ ... ** libs ** arch - x86_64 Error in loadNamespace(name) : there is no package called 'Rc

[R] swutching rows to columns

2010-03-22 Thread LCOG1
Hi All, Consider the following: TRN<-c(5.809657,3.1, 1.774901e-02) TRN_CLUST<-c(-4.174682e-05, 5.538742e-05,1.2) EmpCo<-data.frame(TRN,TRN_CLUST) row.names(EmpCo)<-c("Slope","Fwy","Univ") returns: TRN TRN_CLUST Slope 5.80965700 -4.174682e-05 Fwy 3.1000 5.538742e-05 Un

Re: [R] dotplot

2010-03-22 Thread David Winsemius
You thought you were attaching the data, but have you actually read the relevant sections in the Posting Guide? -- David Winsemius, MD On Mar 22, 2010, at 3:49 PM, Veerappa Chetty wrote: Hi, I am trying to make a dot plot in increasing order of the values. It does not work. How do I do it?

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Rolf Turner
On 23/03/2010, at 6:03 AM, Barry Rowlingson wrote: (Commenting on the sort of articles to be found in Computer Science journals) > The idea of actually producing some dirty, filthy, actual code to > implement their shiny algorithms never seems to cross their minds. Fortune?

[R] Distance between lines

2010-03-22 Thread Janmaat, John
Hello, I'm trying to assess the similarity of two lines that are represented as points (output of differential equation solvers). Is there a function or a package that deals with things like this? Thanks, John. Johannus (John) Janmaat Ass

Re: [R] Password Protection of Data Files and R Code (Was: Fw: Re: Why "\\" instead of simple "/" to specify a file path [modified])

2010-03-22 Thread Marc Schwartz
You need to specify more detail on your functional requirements relative to protection. R itself does not support the direct use of encrypted data or R source files. If you simply want to encrypt/decrypt files before and after use in R, you can use third party programs such as GnuPG (http://www

Re: [R] sets package: converting a set to data frame?

2010-03-22 Thread Henrique Dallazuanna
Try this: data.frame(row.names = unlist(a), gset_memberships(a)) On Mon, Mar 22, 2010 at 6:26 PM, Czerminski, Ryszard wrote: > I just started using nice package "sets" > and I wonder if there are utilities to convert (some) sets to data frame > (as in the example below) > >> library(sets) >> a <

Re: [R] using reorder in "dotplot"

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 5:17 PM, Veerappa Chetty wrote: Hi , Name rate HEALTHALLIANCE HOSPITALS, INC -1.06211747 MOUNT AUBURN HOSPITAL 0.50960291 STURDY MEMORIAL HOSPITAL2.64233232

[R] determine upper convex hull, 2-dimensional case

2010-03-22 Thread Richard and Barbara Males
For an environmental planning example that involves looking at the relative efficiencies of one plan over another, I need to determine the pareto-efficient plans (which I have done), and then, within that set of plans, determine the convex hull representing the outer upper boundary of those points.

[R] sets package: converting a set to data frame?

2010-03-22 Thread Czerminski, Ryszard
I just started using nice package "sets" and I wonder if there are utilities to convert (some) sets to data frame (as in the example below) > library(sets) > a <- gset(elements = list(e('A', 0.1), e('B', 0.8))) > lst <- as.list(a) > nr <- length(lst) > rnames <- character() > for (i in 1:nr) rname

[R] using reorder in "dotplot"

2010-03-22 Thread Veerappa Chetty
Hi , Name rate HEALTHALLIANCE HOSPITALS, INC -1.06211747 MOUNT AUBURN HOSPITAL 0.50960291 STURDY MEMORIAL HOSPITAL2.64233232 LAWRENCE GENERAL HOSPITAL2.15628

Re: [R] Factors attribute format

2010-03-22 Thread Marc Schwartz
On Mar 22, 2010, at 2:00 PM, rkevinbur...@charter.net wrote: > Thanks to Marc Schultz I found the documentation on the "factors" attribute > under ?term.object. It stats: ;-) > factors: A matrix of variables by terms showing which variables appear > in which terms. The entries are

Re: [R] Fw: Re: Why "\\" instead of simple "/" to specify a file path [modified]

2010-03-22 Thread David Winsemius
How about saving, then issuing system() calls to run a zipping program with password? Then remove the original. ?file.remove (.R source files are just text.) -- David. On Mar 22, 2010, at 4:53 PM, Ron Michael wrote: Hi, I was following this thread and would like to ask is there any way to

[R] Fw: Re: Why "\\" instead of simple "/" to specify a file path [modified]

2010-03-22 Thread Ron Michael
Hi, I was following this thread and would like to ask is there any way to save and open a .RData file after using some Password. What I mean to say, how to make my workplace password-protected? Also would like to know how same can be done for .R file. Thanks for your time. Thanks and regards, -

Re: [R] a "simple" statistic question

2010-03-22 Thread Xiang Gao
Maybe I should simplify the problem with the following smaller table. And I just want to ask whether there is any significant difference in the proportion of "Good_Sample" produced by factories located in "City_A" and "City_B". Factory_ID Factory_Location Total_Sample Good_Sample -

[R] summary.formula and continuous variables

2010-03-22 Thread Erik Iverson
Hello, I am using the summary.formula function in the Hmisc package to produce tables. With the "method" argument set to "response", the help says, "Continuous independent variables (see the ‘continuous’ parameter below) are automatically stratified into ‘g’ (see below) quantile groups". B

Re: [R] outputing text colors

2010-03-22 Thread Greg Snow
Another possibility (depending on what you want to do/preferences) is to create a text file that can be postprocessed to give the colors. One example of this is the etxtStart and related functions in the TeachingDemos package. These produce a text file with extra notations that when processed

[R] Writing out result of tapply

2010-03-22 Thread James Rome
I need to write out the result oif a tapply avtaxi = tapply(mdf$TaxiTime, list(mdf$Runway, mdf$OnHour, mdf$ArrivalGate), FUN=mean, na.rm = TRUE) to a data file that I can import into Excel. dim(avtaxi) [1] 10 24 100 dput(avtaxi, file = outfile, control = c("keepNA", "keepInteger", "showAttribut

[R] Parameter col.axis

2010-03-22 Thread Enio Jelihovschi
I have a very short question. Is there any possibility to give to the parameter "col.axis" of graphics function "axis" a vector value of many colors instead of just one color, otherwise is there any way around it? Thank you very much Enio Jelihovschi UESC - Brazil [[alternative HTML versio

[R] dotplot

2010-03-22 Thread Veerappa Chetty
Hi, I am trying to make a dot plot in increasing order of the values. It does not work. How do I do it? Here are the codes I used. I am also attaching the data. I use lattice library. Thanks. Chetty -- y<-state.resid$Hospital.Name[state.resid$State=="MA

Re: [R] Setting breaks to data more appropriately

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 1:49 PM, LCOG1 wrote: Basic question. For the below data, i would like to but each of the values in a bin that represents their value. So the below would hopefully put .1 in the 0-.1 bin, .2 in the .11-.2 bin and so forth. The outlying values would then be put into

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Hans W Borchers
Barry Rowlingson lancaster.ac.uk> writes: > > On Mon, Mar 22, 2010 at 4:28 PM, Hans W Borchers > googlemail.com> wrote: > > > Still I believe that a clever approach might be possible avoiding the need > > to > > call a commercial solver. I am getting this hope from one of Jon Bentley's > > ar

Re: [R] Embed R code in C++

2010-03-22 Thread Romain Francois
Hello, I don't know specifics of Xcode, etc ... it looks nice but I have not used it myself yet. There seems to be issues on OSX with the current released version of RInside (we will release 0.2.2 soon), so I would suggest you download and install the next version of RInside from r-forge:

[R] Setting breaks to data more appropriately

2010-03-22 Thread LCOG1
Basic question. For the below data, i would like to but each of the values in a bin that represents their value. So the below would hopefully put .1 in the 0-.1 bin, .2 in the .11-.2 bin and so forth. The outlying values would then be put into and outer category representing everything >1. Im

Re: [R] Error while trying to save summary() output as csv

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 3:06 PM, Ista Zahn wrote: Hi Kamil, You can use something like write.csv(t(as.matrix(object)), file="name.csv") -Ista On Mon, Mar 22, 2010 at 2:54 PM, Kamil Sijko wrote: Hi, I need to save output of summary() procedure to a csv file. It's all OK when it's applied to a

Re: [R] Error while trying to save summary() output as csv

2010-03-22 Thread Ista Zahn
Hi Kamil, You can use something like write.csv(t(as.matrix(object)), file="name.csv") -Ista On Mon, Mar 22, 2010 at 2:54 PM, Kamil Sijko wrote: > Hi, > > I need to save output of summary() procedure to a csv file. It's all > OK when it's applied to a 'factor' class variable, but when I try to > s

[R] Factors attribute format

2010-03-22 Thread rkevinburton
Thanks to Marc Schultz I found the documentation on the "factors" attribute under ?term.object. It stats: factors: A matrix of variables by terms showing which variables appear in which terms. The entries are 0 if the variable does not occur in the term, 1 if it does occur an

[R] Error while trying to save summary() output as csv

2010-03-22 Thread Kamil Sijko
Hi, I need to save output of summary() procedure to a csv file. It's all OK when it's applied to a 'factor' class variable, but when I try to save a 'integer' class summary to csv it gives me : > summary(rnorm(100, 10)) -> object > write.csv2(object, file='name.csv') Error in do.call("expand.grid

Re: [R] Why "\\" instead of simple "/" to specify a file path

2010-03-22 Thread David Winsemius
On Mar 22, 2010, at 1:22 PM, Bogaso wrote: Hi all, I have saved my workplace in a .RData format. However if I want to open that, I need to use following code : load("C:\\..") Here my question is why "\\". In all the time generally we use "/" like when we use read.delim() function e

Re: [R] importing .bil files

2010-03-22 Thread Barry Rowlingson
On Mon, Mar 22, 2010 at 12:09 PM, Sebastian Leuzinger wrote: > Dear list > > Has anyone got a recipie at hand to import .bil files into R? From what I > understand the .bil files I got contain layered matricies which I would lke > to make available in R as an array or list. > > GIS people seem to

Re: [R] Factors attribute?

2010-03-22 Thread Marc Schwartz
Kevin, See ?terms.object, which is indicated in the Value section of ?terms and listed in the See Also of ?terms. HTH, Marc Schwartz On Mar 22, 2010, at 1:16 PM, rkevinbur...@charter.net wrote: > > I am sorry but I didn't see "factors" mentioned in this documentation. > > Kevin > > He

Re: [R] importing .bil files

2010-03-22 Thread Sharpie
Barry Rowlingson wrote: > > GIS and spatial data formats can often be handled by readGDAL (for > raster grids) from the rgdal package. > > .bil files seem to be handled by the Ehdr driver in GDAL: > > http://www.gdal.org/frmt_various.html > > so if your rgdal package has that driver (run gd

Re: [R] Factors attribute?

2010-03-22 Thread rkevinburton
I am sorry but I didn't see "factors" mentioned in this documentation. Kevin Henrique Dallazuanna wrote: > See ?terms > > On Mon, Mar 22, 2010 at 2:08 PM, wrote: > > I noticed that when I fit a linear model using 'lm' there is an attribute > > called "factors" that is added to the "te

Re: [R] a "simple" statistic question

2010-03-22 Thread Xiang Gao
Thank you very much Joshua. I was thinking to use logistic regression with glm(). But this will pool the individual factories which share the same factor levels together. I was puzzled by how to deal with individual factory. Any idea? I will try your method anyway. Xiang On Mon, Mar 22, 2010 at

Re: [R] Embed R code in C++

2010-03-22 Thread Sharpie
mans wrote: > > Hi, > Can anyone tell me how to embed R code in a C++ file. > > I am actually using a mac running on the OSX 10.6.2 and the IDE Xcode > Version 3.2 and I would like to embed the basic function like geometric, > binomial, normal and hyper geometric distributions in a sample cp

Re: [R] Factors attribute?

2010-03-22 Thread rkevinburton
I am sorry but I didn't see "factors" mentioned in this documentation. Kevin Henrique Dallazuanna wrote: > See ?terms > > On Mon, Mar 22, 2010 at 2:08 PM, wrote: > > I noticed that when I fit a linear model using 'lm' there is an attribute > > called "factors" that is added to the "te

Re: [R] add information above bars of a barplot()

2010-03-22 Thread Greg Snow
Adding text at the top of the bars will tend to distort the perception of their heights. It is better to place numbers (if they are even needed) in the margins. Switching to a dotplot instead of a barplot may be more meaningful as well. -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center

Re: [R] a "simple" statistic question

2010-03-22 Thread Joshua Wiley
Dear Xiang, Now I understand what you meant. If you are only interested in comparing the Good Samples, I think you would have to use the proportion (Good Sample/Total Sample) or something similar. Another thought would be to dummy code the data (e.g., Good = +1, Fair = 0, Bad = -1). Then you co

Re: [R] Why "\\" instead of simple "/" to specify a file path

2010-03-22 Thread Barry Rowlingson
On Mon, Mar 22, 2010 at 5:22 PM, Bogaso wrote: > > Hi all, > > I have saved my workplace in a .RData format. However if I want to open > that, I need to use following code : > > load("C:\\..") > > Here my question is why "\\". In all the time generally we use "/" like when > we use read.delim(

Re: [R] Factors attribute?

2010-03-22 Thread Henrique Dallazuanna
See ?terms On Mon, Mar 22, 2010 at 2:08 PM, wrote: > I noticed that when I fit a linear model using 'lm' there is an attribute > called "factors" that is added to the "term". It doesn't seem to appear for > 'model.matrix', just 'lm'. I have been unable to find where it gets > constructed or w

[R] Why "\\" instead of simple "/" to specify a file path

2010-03-22 Thread Bogaso
Hi all, I have saved my workplace in a .RData format. However if I want to open that, I need to use following code : load("C:\\..") Here my question is why "\\". In all the time generally we use "/" like when we use read.delim() function etc. Is there any possibility to have some consistenc

Re: [R] Arima forecasting

2010-03-22 Thread Matteo Bertini
> Matteo Bertini schrieb: >> >> Hello everyone, >> >> I'm doing some benchmark comparing Arima [1] and SVR on time series data. >> >> I'm using an out-of-sample one-step-ahead prediction from Arima using >> the "fitted" method [2]. >> >> Do someone know how to have a two-steps-ahead forecast timese

[R] superfluous distribution found with mclust

2010-03-22 Thread Denis Chabot
Dear R users, I use mclust to fit a mixture of normal distributions to many datasets. Usually the Mclust function finds 1 or two normal distributions, rarely, 3. But I hit a strange case today. my.data <- c(57.96920, 51.79415, 51.20538, 55.53637, 51.64291, 56.61476, 51.28855, 55.56169, 51.8511

[R] Factors attribute?

2010-03-22 Thread rkevinburton
I noticed that when I fit a linear model using 'lm' there is an attribute called "factors" that is added to the "term". It doesn't seem to appear for 'model.matrix', just 'lm'. I have been unable to find where it gets constructed or what it means? It looks like a two dimensional array that I may

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Barry Rowlingson
On Mon, Mar 22, 2010 at 4:28 PM, Hans W Borchers wrote: > Still I believe that a clever approach might be possible avoiding the need to > call a commercial solver. I am getting this hope from one of Jon Bentley's > articles in the series Programming Pearls. > Is this the 'Largest Empty Rectangle

[R] calculate response probabilities using sem-analysis

2010-03-22 Thread Tryntsje Wesselius
Hi everyone, I just conducted a structural equation model for estimating a response model. This model should predict the probability that someone is responding to a direct mailing. I used the sem package for this. When I have my coefficients I want to know how well my model predicts the probabilit

[R] maxNR - Error in p(a, b) : element 1 is empty; the part of the args list of '*' being evaluated was: (b, t)

2010-03-22 Thread 4-real
Hello everyone... We were trying to implement the Newton-Raphson method in R, and estimate the parameters a and b, of a function, F, however we can't seem to implement this the right way. Hope you can show me the right way to do this. I think what we want R to do is to read the data from the websi

[R] Error message

2010-03-22 Thread Mathew, Abraham T
I'm recoding variables and running a logit. Unfortunately, I get the following error. data04$V043114 part <- data04$V043114 attributes(part) summary(part) partb < part partb[part %in% levels(part)[4]] <- NA partb[part %in% levels(part)[5]] <- NA partb[part %in% levels(part)[6]] <- NA partb[p

[R] help needed with boxplot

2010-03-22 Thread kathy_BJ
I am new to R, can anyone help with boxplot for a dataset like: file1 col1 col2 col3 col4 col5 050350005 101 56.625 48.318 RED 051010002 106 50.625 46.990 GREEN 051190007 25 65.875 74.545 BLUE 051191002 246 52.875 57.070 RED 220050004 55 70 80.274 BLUE 220150008 75 67.750 62.749 RED 220170001 77 6

Re: [R] Lag Function

2010-03-22 Thread Gabor Grothendieck
It seems to mean that it adds a Tsp attribute but it does not change the class to "ts": > dput(lag(1:3)) structure(1:3, .Tsp = c(0, 2, 1)) Try this: > ts(1:3) - structure(lag(1:3), class = "ts") Time Series: Start = 1 End = 2 Frequency = 1 [1] -1 -1 or > ts(1:3) - lag(ts(1:3)) Time Series: Sta

Re: [R] add information above bars of a barplot()

2010-03-22 Thread William Dunlap
> -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of William Dunlap > Sent: Monday, March 22, 2010 9:31 AM > To: Martin Batholdy; r help > Subject: Re: [R] add information above bars of a barplot() > > > -Original Message-

[R] Plot symbols on dendrogram leaves

2010-03-22 Thread Wade Wall
Hi all, I am wondering if there is a way to plot symbols onto the leaves of a dendrogram. Thanks for any help. Wade __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project

Re: [R] Lag Function

2010-03-22 Thread Erik Iverson
Hello, Downey, Patrick wrote: Can anyone tell me what's going on here? x <- matrix(data=c(1,2,3,4,5),ncol=1) x1 <- lag(x,k=1) x x1 x - x1 That's with x specified as a column vector, but the same thing happens when it's a row vector. x <- c(1,2,3,4,5) x1 <- lag(x,k=1) x x1 x - x1 I'm not su

Re: [R] Find a rectangle of maximal area

2010-03-22 Thread Hans W Borchers
Hans W Borchers googlemail.com> writes: > > For an application in image processing -- using R for statistical purposes -- > I need to solve the following task: > > Given n (e.g. n = 100 or 200) points in the unit square, more or less > randomly distributed. Find a rectangle of maximal area withi

Re: [R] add information above bars of a barplot()

2010-03-22 Thread William Dunlap
> -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of Martin Batholdy > Sent: Monday, March 22, 2010 7:53 AM > To: r help > Subject: [R] add information above bars of a barplot() > > hi, > > > I have a barplot with six clusters of

Re: [R] IRT simulation repeated

2010-03-22 Thread Greg Snow
Or use the replicate function (which is basically a wrapper for lapply). -- Gregory (Greg) L. Snow Ph.D. Statistical Data Center Intermountain Healthcare greg.s...@imail.org 801.408.8111 > -Original Message- > From: r-help-boun...@r-project.org [mailto:r-help-boun...@r- > project.org] O

[R] Lag Function

2010-03-22 Thread Downey, Patrick
Can anyone tell me what's going on here? x <- matrix(data=c(1,2,3,4,5),ncol=1) x1 <- lag(x,k=1) x x1 x - x1 That's with x specified as a column vector, but the same thing happens when it's a row vector. x <- c(1,2,3,4,5) x1 <- lag(x,k=1) x x1 x - x1 When the documentation says "Vector or matrix

[R] Embed R code in C++

2010-03-22 Thread mans
Hi, Can anyone tell me how to embed R code in a C++ file. I am actually using a mac running on the OSX 10.6.2 and the IDE Xcode Version 3.2 and I would like to embed the basic function like geometric, binomial, normal and hyper geometric distributions in a sample cpp file. I heard about the l

Re: [R] a "simple" statistic question

2010-03-22 Thread Xiang Gao
Dear Joshua, Thank you so much for such fast reply. Here is my thought: I don't know if it is fair to compare means because the total samples from each factory can be very different (like, In Factory_5 with 150 total samples vs. Factory_9 with 70 total samples). Maybe it is more fair to compare f

Re: [R] calculate response probabilities using sem-analysis

2010-03-22 Thread Jarrett Byrnes
Did you back-calculate to estimate an intercept? Alternately, I've been working on a function that takes a fitted sem and gets predicted values given an input. Contact me off-list and I'll send it to you. On Mar 22, 2010, at 8:37 AM, Tryntsje Wesselius wrote: Hi everyone, I just conducte

Re: [R] add information above bars of a barplot()

2010-03-22 Thread Rubén Roa
-Mensaje original- De: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] En nombre de Martin Batholdy Enviado el: lunes, 22 de marzo de 2010 15:53 Para: r help Asunto: [R] add information above bars of a barplot() hi, I have a barplot with six clusters of four bars eac

Re: [R] a "simple" statistic question

2010-03-22 Thread Joshua Wiley
Dear Xiang, Unequal sample size is not a problem for t-tests. If I understand correctly, you do not want to pool your data because you believe the variance of individual factories is heterogenous. Are you willing to pool the means? You could calculate the variance for factories individually and

[R] calculate response probabilities using sem-analysis

2010-03-22 Thread Tryntsje Wesselius
Hi everyone, I just conducted a structural equation model for estimating a response model. This model should predict the probability that someone is responding to a direct mailing. I used the sem package for this. When I have my coefficients I want to know how well my model predicts the probabili

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