Re: [R] Error in building ROracle in Windows with R 2.6.2 and Oracle 10g.

2008-04-29 Thread Prof Brian Ripley
This is really off-topic here (a programming question about a non-recommended compiler system, and about a contributed package), but reading README.packages will give you some clues (as rw-FAQ 8.3 says). The current version is at https://svn.r-project.org/R/trunk/src/gnuwin32/README.packages P

Re: [R] Can R do rts (Regular Time Series) like S-Plus?

2008-04-29 Thread Prof Brian Ripley
Use ts() in R. See e.g. the chapter on times series in MASS4. Just replacing rts() by ts() in your example gives what I guess you were expecting in S-PLUS. On Wed, 30 Apr 2008, Louise Hoffman wrote: Dear readers, S-Plus have a rts function (Regular Time Series), which is used like so: fvek

[R] Cross Spectrum Analysis

2008-04-29 Thread Maura E Monville
I am reading some documentation about Cross Spectrum Analysis as a technique to compare spectra. My understanding is that it estimates the correlation strength between quasi-periodic structures embedded in two signals. I believe it may be useful for my signals analysis. I was referred to the R

Re: [R] Can R do rts (Regular Time Series) like S-Plus?

2008-04-29 Thread Gabor Grothendieck
On Tue, Apr 29, 2008 at 11:03 PM, Louise Hoffman <[EMAIL PROTECTED]> wrote: > Dear readers, > > S-Plus have a rts function (Regular Time Series), which is used like so: > > fveks<-read.csv('http://louise.hoffman.googlepages.com/veks.csv',header=TRUE,sep=',') > attach(fveks) > acf(ts.intersect(rts(H

Re: [R] boxplots

2008-04-29 Thread Bill.Venables
Georg, A boxplot does not have a mean-bar. It has a median bar. Bill Venables CSIRO Laboratories PO Box 120, Cleveland, 4163 AUSTRALIA Office Phone (email preferred): +61 7 3826 7251 Fax (if absolutely necessary): +61 7 3826 7304 Mobile: +61 4 8819 4402 Home Phone:

Re: [R] boxplots

2008-04-29 Thread Michael Kubovy
?boxplot The boxplot does not show the mean but the median: median(c(0,15,0,60,0,0,0,0,0,60,60,0,60,0,30,0)) > b <- boxplot(c(0,15,0,60,0,0,0,0,0,60,60,0,60,0,30,0)) b$stats [,1] [1,]0 [2,]0 [3,]0 [4,] 45 [5,] 60 _ Professor Michael Kubovy Univ

[R] boxplots

2008-04-29 Thread Georg Ehret
Dear R user group, I am working with boxplots and cannot solve the following problem: > data<-c(0,15,0,60,0,0,0,0,0,60,60,0,60,0,30,0) > data [1] 0 15 0 60 0 0 0 0 0 60 60 0 60 0 30 0 > boxplot(data) The boxplot has the first hinge and the mean-bar both at 0... Why is this the mean

[R] Can R do rts (Regular Time Series) like S-Plus?

2008-04-29 Thread Louise Hoffman
Dear readers, S-Plus have a rts function (Regular Time Series), which is used like so: fveks<-read.csv('http://louise.hoffman.googlepages.com/veks.csv',header=TRUE,sep=',') attach(fveks) acf(ts.intersect(rts(HC.f),rts(Ta.f),rts(GR.f),rts(W.f))) Warning the csv file is 750kB. Can the same be don

Re: [R] Empty Set In a Set

2008-04-29 Thread jim holtman
Is this what you want: > ES <- 1 > ifelse(length(ES %in% c(1,2,3)) == 0, TRUE, ES %in% c(1,2,3)) [1] TRUE > ES <- 4 > ifelse(length(ES %in% c(1,2,3)) == 0, TRUE, ES %in% c(1,2,3)) [1] FALSE > ES <- NULL > ifelse(length(ES %in% c(1,2,3)) == 0, TRUE, ES %in% c(1,2,3)) [1] TRUE > On Tue, Apr 29, 20

Re: [R] help on graphing in R

2008-04-29 Thread stephen sefick
brevity is refreshing On Tue, Apr 29, 2008 at 3:40 PM, Mittal Meghna <[EMAIL PROTECTED]> wrote: > > __ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posti

[R] Empty Set In a Set

2008-04-29 Thread Jason Q. McClintic
-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Dear List: I'm looking for a form of the empty set such that if ES is said representation, ~ES %in% c(1,2,3) evaluates to TRUE. Thank you in advance for your assistance. Sincerely, Jason Q. McClintic - -- Jason Q McClintic UST MB 1945 2115

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Anthony28
I'd just like to thank all you guys for stepping in so promptly with help. I haven't yet had a chance to implement any of your code yet, but just by looking over what you've suggested, I think I have enough to guide me. So thanks once again! -- View this message in context: http://www.nabble.com

Re: [R] behaviour of .Fortran in terms of "double precision" and "real" datatype

2008-04-29 Thread Duncan Murdoch
On 29/04/2008 6:52 PM, Sebastian Eiser wrote: Hello R-world! This is my first post to the R list, so I feel that I need to say thanks to the community (I'm using R now for 5 months)! I'd greatly appreciate if somebody could explain some odd behavior of ".Fortran" to me. Let's assume a primitive

[R] Problem installing packages

2008-04-29 Thread Owe Jessen
Hi, when I try installing new packages (in this case DBI) I run into the following problem: Paket 'DBI' erfolgreich ausgepackt und MD5 Summen abgeglichen Warnung: kann temporäre Installation 'C:\Programme\R\R-2.7.0\library\file5f906952\DBI' nicht nach 'ÝxlDÌú [EMAIL PROTECTED]' verschieben

[R] behaviour of .Fortran in terms of "double precision" and "real" datatype

2008-04-29 Thread Sebastian Eiser
Hello R-world! This is my first post to the R list, so I feel that I need to say thanks to the community (I'm using R now for 5 months)! I'd greatly appreciate if somebody could explain some odd behavior of ".Fortran" to me. Let's assume a primitive Fortran subroutine barfoo.f --

Re: [R] for loop in nls function

2008-04-29 Thread Yuelin Li
> results[i]<- nls(Tw ~ mu + ((alpha - mu)/(1 + exp(gamma*(B - > Mean_Air, > data = dem16, > start = list(mu = 0.0001, alpha = 21.8, gamma = 0.22, B = 12.8)) > } If you have a variable that codes "site" then you can try something like this to get the parameters over sites.

[R] kernel matching pursuit

2008-04-29 Thread Justin Donaldson
Has anyone come up with some routines that will perform kernel matching pursuit, or orthogonal matching pursuit? I was hoping for something similar to what matlab has with wavelab: http://www-stat.stanford.edu/~wavelab/ Best, -Justin -- Justin Donaldson PhD Candidate, Informatics Indiana Unive

Re: [R] function to generate weights for lm?

2008-04-29 Thread tom soyer
Thanks Kingsford! I will cc r-help. varPower() works for me. I want to use lm because predict.gls does not give lwr and upr values, and also the bptest and ncv.test only work with lm models... On 4/29/08, Kingsford Jones <[EMAIL PROTECTED]> wrote: > > hi Tom, > > Basically, a simple way to model

Re: [R] Running regression (lm, lrm) 100+ times and saving the results as matrix

2008-04-29 Thread Mike H. Ryu
Much thanks to Chuck Cleland for the following solution: t(sapply(split(mydf, mydf$TIME), function(x){coefficients(summary(glm(X ~ A + B, data = x, family=binomial)))})) To see what's in the 12 columns of the matrix returned by those lines, look at the results this way: lapply(split(mydf, mydf

[R] Problem installing packages

2008-04-29 Thread Owe Jessen
Hi, when I try installing new packages (in this case DBI) I run into the following problem: Paket 'DBI' erfolgreich ausgepackt und MD5 Summen abgeglichen Warnung: kann temporäre Installation 'C:\Programme\R\R-2.7.0\library\file5f906952\DBI' nicht nach 'ÝxlDÌú [EMAIL PROTECTED]' verschieben

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Bert Gunter
If you can(one dimensional only), try using lowess() instead. Probably in a for loop as Ray suggested. loess() is more powerful and flexible, but you pay for it in extra complexity and time. Maybe in this case, it's not worth it. -- Bert Gunter Genentech -Original Message- From: [EMAIL P

Re: [R] A Maze Generator

2008-04-29 Thread Clint Bowman
I'm familiar with mazes that have a designated starting and ending points but don't see any here (or is this just a maze Clint BowmanINTERNET: [EMAIL PROTECTED] Air Dispersion Modeler INTERNET: [EMAIL PROTECTED] Air Quality Program VOICE:

[R] Error in building ROracle in Windows with R 2.6.2 and Oracle 10g.

2008-04-29 Thread Ajay DAS
Hi, I am new to R. I need to communicate with Oracle from R program in windows xp. So I am planning to use ROracle. I downloaded the ROracle src from the site below: http://cran.r-project.org/web/packages/ROracle/index.html I am using R version 2.6.2 and Oracle 10g. I followed the instruct

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Ray Brownrigg
In addition to Tony's suggestion, have a look at the following sequence, which I suspect is because the call to apply will duplicate your 1.5GB matrix, whereas the for loop doesn't [I stand to be corrected here]. > x <- matrix(runif(21), 21) > unix.time({res <- numeric(ncol(x)); for(i in 1:l

Re: [R] A Maze Generator

2008-04-29 Thread McGehee, Robert
Thanks! I wasn't on a clean R session so I didn't catch this. I intended the 'i' to be the same from the last for loop, but as you point out on the first run there is no 'i'! Try this: plotMaze <- function(z, text=FALSE, lwd=2, ...) { N <- nrow(z) y <- -matrix(rep(1:N, N), N, N, byrow=F

[R] R code for weighted Deming regression?

2008-04-29 Thread Du, Hongyan
Hi, > > Any one has the code that I can borrow? Or any suggestions? > > Highly appreciate. > > Hongyan Du __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/post

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Tony Plate
It's quite possible that much of the time spent in loess() is setting up the data (i.e., the formula, terms, model.frame, etc.), and that much of that is repeated identically for each call to loess(). I would suggest looking at the code of loess() and work out what arguments it is calling simp

Re: [R] A Maze Generator

2008-04-29 Thread Peter Dalgaard
McGehee, Robert wrote: I had some fun this afternoon coding up a 'maze generator' in R. I thought I'd pass along the fruits of my labor for everyone's amusement. As written, every point is connected to every other point, so feel free to 'start' and 'finish' anywhere you like. Have fun! --Rober

Re: [R] Annoying bug in package cairoDevice

2008-04-29 Thread Michael Lawrence
Sorry about this. cairoDevice 2.8 (just uploaded to CRAN) should fix this problem. On Tue, Apr 29, 2008 at 1:08 PM, Josh Gilbert <[EMAIL PROTECTED]> wrote: > I sent this to R-Help and the listed maintainer of cairoDevice, I hope > that was the right thing to do. > > For some reason, Cairo_png put

[R] for loop in nls function

2008-04-29 Thread Ingrid Tohver
Hello, I am trying to apply a least squares non-linear regression to my dataset, dem16. I can apply it to a subset based on a single site fine, but I want to apply it to each (of 197) sites. I am stumbling over a "for" loop. Site and Mean_Air are variables in my dataset and I would like to

[R] AIC extract and comparison

2008-04-29 Thread Lisa
Hi, I need to fit models and use AIC method to campare the best fitted model manually. When i extract AIC by using extractAIC, it gave me the df and AIC values. Now the problem is, how can I compare the AIC values from two models? is there anyway to extract AIC with no df so that I can compare dir

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Sudipta Sarkar
Jim Thanks again yes its 64 bit version of R. So you suggest writing out 9 million columns and then loading them individually and applying the function of each of these columns! But since we are using a for loop here too so won't it end up taking almost same? Plus we aren't we increasing the i/o ov

[R] Looking for Post-hoc tests (a la TukeyHSD) or interaction-level independent contrasts for survival analysis.

2008-04-29 Thread Thomas Oliver
Hello all R-helpers, I've performed an experiment to test for differential effects of elevated temperatures on three different groups of corals. I'm currently performing a cox proportional hazards regression with censoring on the survivorship (days to mortality) of each individual in the

[R] A Maze Generator

2008-04-29 Thread McGehee, Robert
I had some fun this afternoon coding up a 'maze generator' in R. I thought I'd pass along the fruits of my labor for everyone's amusement. As written, every point is connected to every other point, so feel free to 'start' and 'finish' anywhere you like. Have fun! --Robert PS. Feel free to pass

Re: [R] If(cond) statement

2008-04-29 Thread Johannes Hüsing
Beck, Kenneth (STP) <[EMAIL PROTECTED]> [Tue, Apr 29, 2008 at 07:21:40PM CEST]: > mxx=max(cpx_list$nMV); > mxy=max(trend_list$nMV); > if (mxx>mxy) > mxy=mxx > else > mxx=mxy > Can't this be replaced by mxx <- max(c(cpx_list$nMV, trend_list$nMV)) mxy <- mxx ? -- Johannes Hüsing

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Whit Armstrong
are the "chunks" on which you need to apply the function rolling windows? do they overlap? I have some c++ template utilities that I use for window functions (on timeseries objects) which you are welcome to copy and modify to fit your problem. they are available here: git://repo.or.cz/fts.git gi

Re: [R] If(cond) statement

2008-04-29 Thread Hutchinson,David [PYR]
Try: mxx = 2 mxy = 4 if (mxx > mxy) { print ("mxx reigns supreme") } else { print ("mxy reigns supreme") } -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Beck, Kenneth (STP) Sent: Tuesday, April 29, 2008 9:22 AM To: r-help@r-project.org Subject: [R

[R] Annoying bug (?) in package cairoDevice

2008-04-29 Thread Josh Gilbert
I apologize for sending this twice, I didn't realize that gmail helpfully defaulted to rich formatting. For some reason, Cairo_png puts a box around a figure when you call plot.new. It looks like box was called with black and a transparent background. Example: > library(cairoDevice) > Cairo_png('c

[R] Annoying bug in package cairoDevice

2008-04-29 Thread Josh Gilbert
I sent this to R-Help and the listed maintainer of cairoDevice, I hope that was the right thing to do. For some reason, Cairo_png puts a box around a figure when you call plot.new. It looks like box was called with black and a transparent background. Example: > library(cairoDevice) > Cairo_png('ca

Re: [R] Applying user function over a large matrix

2008-04-29 Thread Sudipta Sarkar
Hi Jim, Thanks for your prompt response, I am using a fairly powerful Mac with Leopard OS and 17GB RAM and 2x3 GhZ intel zeon processor so I do not think the system is paging. I also using the Rmpi and snow utilities to parallelize it but even then it takes 3.5-4 hours to just complete one chunk o

Re: [R] Calling R from C - part way there but need a push!

2008-04-29 Thread Maximillian Murphy
I'm afraid I haven't quite got the hang of this yet. Here's a Hello World: #include #include #include #include extern int R_running_as_main_program; /* in ../unix/system.c */ int main(int ac, char **av) { SEXP aleph, beth; // R_running_as_main_program = 1; // A //

[R] c code working in linux and hanging in windows

2008-04-29 Thread Vidhu Choudhary
Hi All, I am calling some c code from R. It successfully makes the dll and .so files. When I run .so in Linux is works prefect but hangs in windows. Though the dll loads but it never returns back from the c function Can you please suggest the possible cause of this thank you vidhu [[alte

[R] help on graphing in R

2008-04-29 Thread Mittal Meghna
__ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.

Re: [R] Help with installing R on Red Hat linux 4

2008-04-29 Thread David Nordello
Thanks for the help Patrick I ran yum provides libg2c* Looking in available packages for a providing package Available package: gcc-g77.i386 0:3.4.6-9 from base matches with /usr/lib/gcc/i386-redhat-linux/3.4.3/libg2c.a Available package: gcc-g77.i386 0:3.4.6-9 from base matches with /usr/lib/g

Re: [R] Combine Values into a Vector or List

2008-04-29 Thread Diego Culattoni
Thank you Jorge, what I want to have is > z <- A1+A2 >z 4 The problem is that A1, A2,... still unknown, so that I have the following error > A1 object "A1" not found Thank you in advance! - Original Message From: Jorge Ivan Velez <[EMAIL PROTECTED]> To: Diego Culattoni <[EMAIL PROTEC

Re: [R] Help on extract paramters from fitted models

2008-04-29 Thread Marc Schwartz
Lisa wrote: Hi, I have a question about how to extract paramters from a fitted model. I can extract coefficients and std, but from some other statistics, I dont know how to extract. Can anyone help? Here it is an example: coxout<-coxph(Surv(t,t.censor)~x) coxout Call: coxph(formula = Su

Re: [R] how to solve a power series linear coefficient equation

2008-04-29 Thread stephen sefick
I am not entirely sure what it is that you want to do. functionname<-function(a,b,c){ + a<-sum(a) + b<-sum(b) + c<-sum(c) + y<-(a+bx+cx^2) + x<-(x) + } for each <- your are defining and object. it doesn't make much sense to sum(a) unless you have made a something etc. Look at packages- type CRA

[R] Applying user function over a large matrix

2008-04-29 Thread Sudipta Sarkar
Respected R experts, I am trying to apply a user function that basically calls and applies the R loess function from stat package over each time series. I have a large matrix of size 21 X 900 and I need to apply the loess for each column and hence I have implemented this separate user function

[R] tcltk

2008-04-29 Thread John P. Burkett
On an x86 machine operating under Gentoo Linux, I'm having trouble with tcltk in R-2.6.1 (the latest version available through Gentoo's emerge/portage system). The problem first came to my attention when "install.packages("Rmetrics")" produced the following error message: Loading required packa

Re: [R] Combine Values into a Vector or List

2008-04-29 Thread Jorge Ivan Velez
Hi Diego, Try this: z<-As["A1"]+As["A2"]; names(z)<-"z" z 4 HTH, Jorge On Tue, Apr 29, 2008 at 2:57 PM, Diego Culattoni <[EMAIL PROTECTED]> wrote: > Thank you Jorge, what I want to have is > > z <- A1+A2 > >z > 4 > The problem is that A1, A2,... still unknown, so that I have the following

Re: [R] Help on extract paramters from fitted models

2008-04-29 Thread Henrique Dallazuanna
See the source code of function: getS3method("print", "coxph") is this block: tmp <- cbind(coef, exp(coef), se, coef/se, signif(1 - pchisq((coef/se)^2, 1), digits - 1)) On 4/29/08, Lisa <[EMAIL PROTECTED]> wrote: > > Hi, I have a question about how to extract paramters from a fitted model. > I

[R] Help on extract paramters from fitted models

2008-04-29 Thread Lisa
Hi, I have a question about how to extract paramters from a fitted model. I can extract coefficients and std, but from some other statistics, I dont know how to extract. Can anyone help? Here it is an example: > coxout<-coxph(Surv(t,t.censor)~x) > coxout Call: coxph(formula = Surv(t, t.censor

Re: [R] If(cond) statement

2008-04-29 Thread Erik Iverson
Kenneth - See ?if in the Details section. Specifically this part (at least in R 2.7), "In particular, you should not have a newline between '}' and 'else' to avoid a syntax error in entering a 'if ... else' construct at the keyboard or via 'source'." The R interpreter can't 'see ahead' th

Re: [R] If(cond) statement

2008-04-29 Thread Chuck Cleland
On 4/29/2008 1:21 PM, Beck, Kenneth (STP) wrote: Why will this simple statement not work? I think I am following the documentation for if(cond) statements, and I have tried wrapping the cons.expr and alt.expr in {}, I get the same error. There is no example in the help file, and this is not cover

[R] Statistical Methods and Software for the Analysis of Occupational Exposure Data With Non-Detectable Values

2008-04-29 Thread Tom La Bone
FYI This is a nice package that is not on CRAN for some reason. You can get it at http://www.csm.ornl.gov/esh/statoed/ Tom -- View this message in context: http://www.nabble.com/Statistical-Methods-and-Software-for-the-Analysis-of-Occupational-Exposure-Data-With-Non-Detectable-Values-tp169662

Re: [R] Combine Values into a Vector or List

2008-04-29 Thread Jorge Ivan Velez
Hi Diego, Is this what you want? # Data set set.seed(123) x1<-paste("A", 1:6, sep = "") x2<- round(rgamma(6,2,1)) x3<-paste("B", 1:6, sep = "") x4<- round(rgamma(6,2,1)) data1 <- data.frame(x1,x2,x3,x4) data1 x1 x2 x3 x4 1 A1 1 B1 0 2 A2 3 B2 0 3 A3 0 B3 3 4 A4 2 B4 2 5 A5 4 B5 2 6 A6

Re: [R] Calling R from C - part way there but need a push!

2008-04-29 Thread Duncan Murdoch
On 29/04/2008 12:19 PM, Maximillian Murphy wrote: Dear All, I've read the manual on "Writing R Extensions" and in particular the part on calling R from C. (Most of the manual is about calling C from R, not the other way around.) The good news is that I can now call _some_ R from C, speci

[R] panel.xyplot()

2008-04-29 Thread Qian R
I am try to create a plot using xyplot(). I created a function panel.fun() wich generate segment, but I need use two columns from dataset2. library(lattice) panel.fun <- function(x, y, minx, maxx, miny, maxy) { panel.xyplot(x,y) # since I don't know how to call dataset2 inside panel

[R] R code for weighted Deming regression?

2008-04-29 Thread Du, Hongyan
> Hi, > > Any one has the code that I can borrow? Or any suggestions? > > Highly appreciate. > > Hongyan Du [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

[R] If(cond) statement

2008-04-29 Thread Beck, Kenneth (STP)
Why will this simple statement not work? I think I am following the documentation for if(cond) statements, and I have tried wrapping the cons.expr and alt.expr in {}, I get the same error. There is no example in the help file, and this is not covered in the Introduction to R, SimpleR or other tutor

Re: [R] function to generate weights for lm?

2008-04-29 Thread Kingsford Jones
On Tue, Apr 29, 2008 at 6:20 AM, tom soyer <[EMAIL PROTECTED]> wrote: > Hi, > > I would like to use a weighted lm model to reduce heteroscendasticity. I am > wondering if the only way to generate the weights in R is through the > laborious process of trial and error by hand. Does anyone know if

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Julian Burgos
Hey Anthony, My previous function may not work in all cases. Say one of the experiments yields these numbers: 1,2,3,6,7 Would you say that the proportion of consecutive numbers is 100%? If so, this will work: prop.diff=function(x){ d=diff(sort(x)) prop=sum((c(0,d==1)+c(d==1,0))>0) prop=pr

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Charles C. Berry
On Tue, 29 Apr 2008, Anthony28 wrote: I need to use R to model a large number of experiments (say, 1000). Each experiment involves the random selection of 5 numbers (without replacement) from a pool of numbers ranging between 1 and 30. What I need to know is what *proportion* of those experime

Re: [R] ggplot2: setting global graphic parameters with png driver

2008-04-29 Thread Xavier Chardon
Sorry I forgot these informations. I'm using R 2.70, under Linux (Debian Etch). The png driver uses cairo, and the version of libcairo installed is 1.2.4 (which is not the latest, but more recent versions are not available is the debian stable repositories) I tried bitmap(), and it does not

Re: [R] Combine Values into a Vector or List

2008-04-29 Thread Diego Culattoni
Hi Richard, Thanks a lot! What I actually want to have >A1 4 >A2 2 . and so on! Is this possible? Thank you again :)! - Original Message From: "[EMAIL PROTECTED]" <[EMAIL PROTECTED]> To: Diego Culattoni <[EMAIL PROTECTED]> Cc: [EMAIL PROTECTED]; [EMAIL PROTECTED] Sent: Monday

[R] Calling R from C - part way there but need a push!

2008-04-29 Thread Maximillian Murphy
Dear All, I've read the manual on "Writing R Extensions" and in particular the part on calling R from C. (Most of the manual is about calling C from R, not the other way around.) The good news is that I can now call _some_ R from C, specifically the R functions which have C header file

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Julian Burgos
Hey Anthony, There must be many ways to do this. This is one of them: #First, define a function to calculate the proportion of consecutive numbers in a vector. prop.diff=function(x){ d=diff(sort(x)) prop=(sum(d==1)+1)/length(x) return(prop)} #Note that I am counting both numbers in a consecu

Re: [R] How to hide the warnings

2008-04-29 Thread Henrik Bengtsson
See help(warnings) and from there you'll also find help(warning). It is described there. /Henrik On Tue, Apr 29, 2008 at 5:14 PM, Vidhu Choudhary <[EMAIL PROTECTED]> wrote: > Hi All, > I want to hide all the system(R) generated warning messages and want only > the messages from my script shoul

Re: [R] Concatenate variables and quoted text for output filenames

2008-04-29 Thread Wolfgang Huber
29/04/2008 17:04 trhermes a écrit > I am outputting some graphs from SpatStat using a for loop. I want the png > files to include the i and j from the nested loops in their names. For > example, I want the file names to look like "i-j_plot.png". The code is > below: > > ma <- levels(marks(X)) >

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Charles Annis, P.E.
This will work: my.list <- c(2, 28, 31, 4, 27) sort(my.list) diff(sort(my.list)) any(diff(sort(my.list)) == 1) the middle two lines are only to illustrate what's going on. Best wishes! Charles Annis, P.E. [EMAIL PROTECTED] phone: 561-352-9699 eFax: 614-455-3265 http://www.StatisticalEnginee

Re: [R] deleting variables

2008-04-29 Thread Rubén Roa-Ureta
Richard Pearson wrote: ?rm Richard Ralf Goertz wrote: How can I automatically exclude one variable from being saved in the workspace when I quit an R session? The problem is I don't know how to erase a variable once it has been created. [...] Ralf More on the use of rm. If you want to

[R] Concatenate variables and quoted text for output filenames

2008-04-29 Thread trhermes
I am outputting some graphs from SpatStat using a for loop. I want the png files to include the i and j from the nested loops in their names. For example, I want the file names to look like "i-j_plot.png". The code is below: ma <- levels(marks(X)) n <- length(ma) for(i in 1:n) for(j in 1:

Re: [R] F values from a Repeated Measures aov

2008-04-29 Thread John Vokey
Two things: 1. the + Sex term is superfluous 2. the variable Subject needs to be a Factor, not a vector (as I suspect it currently is). That is, add: mydata.tab$Subject=as.factor(mydata.tab$Subject) in the preamble before the aov call, and all should be fine. On 29-Apr-08, at 4:00 AM, [EMA

Re: [R] Consecutive zeros in a vector

2008-04-29 Thread Duncan Murdoch
On 29/04/2008 11:39 AM, Kenn Konstabel wrote: Suppose X is a long vector of integers (typically about 3 elements). Is there an efficient way to detect whether there are at least N consecutive zeros in X, and if yes, where does this occur? for example, suppose X is: ... and N is 10. I wou

[R] Consecutive zeros in a vector

2008-04-29 Thread Kenn Konstabel
Suppose X is a long vector of integers (typically about 3 elements). Is there an efficient way to detect whether there are at least N consecutive zeros in X, and if yes, where does this occur? for example, suppose X is: 1 2 3 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4 2 0 1 2 0 0 0 2 2 2 2 2 ... a

[R] how to solve a power series linear coefficient equation

2008-04-29 Thread e-letter
Readers, I am having difficulty understanding how to enter commands into r. I have data arranged as: 100, 200, 300 5.6, 6.7, 7.8 8.9, 9.0, 0.1 1.2, 2.3, 3.4 The data is saved in csv format and I use the command 'read.table' to import into r. The values 5.6...3.4 are a function of values 100,..

Re: [R] deleting variables

2008-04-29 Thread Richard Pearson
?rm Richard Ralf Goertz wrote: How can I automatically exclude one variable from being saved in the workspace when I quit an R session? The problem is I don't know how to erase a variable once it has been created. Background: I open a connection called "con" to a database server in my ~/.Rprof

[R] How to hide the warnings

2008-04-29 Thread Vidhu Choudhary
Hi All, I want to hide all the system(R) generated warning messages and want only the messages from my script should be shown when i run myscript.R Can you please suggest how can I hide the warnings Thank you Vidhu [[alternative HTML version deleted]]

[R] deleting variables

2008-04-29 Thread Ralf Goertz
How can I automatically exclude one variable from being saved in the workspace when I quit an R session? The problem is I don't know how to erase a variable once it has been created. Background: I open a connection called "con" to a database server in my ~/.Rprofile. Obviously, the connection expi

Re: [R] merging multiple data frames with different numbers of rows

2008-04-29 Thread Gabor Grothendieck
It appears that these are time series (i.e. there is only one value of River Mile in any one data frame) so if that's right you would be better off representing them as time series. Using zoo: > library(zoo) > feb06.z <- zoo(feb06[,2], feb06[,1]) > may06.z <- zoo(may06[,2], may06[,1]) > jun06.z <

[R] ggplot2: labels and breaks order does not match and I can't use scale_fill_identity

2008-04-29 Thread Mikhail Spivakov
Hi, I'm plotting a bar chart like this: ggplot() + geom_bar(data=res,aes(fill=f1,x=f2,y=y),stat="identity",position="dodge") f1 contains quite a few levels and the plot is really quite difficult to read when the order of bars on the graph and on the legend does not match. This problem has been

Re: [R] Get inside a function the name of a variable called as argument?

2008-04-29 Thread Hans Ekbrand
On Tue, Apr 29, 2008 at 03:53:02PM +0200, Julien Roux wrote: > Hi list, > I created a function to plot my data: > plot_function(vector) > I want to write the name of the argument vector in the legend/title of > the plot. > For example if I call: > > plot_function(my_vector) > I want "my_vector" to

Re: [R] randomForest and ordered factors

2008-04-29 Thread Birgit Lemcke
Hello Andy, thanks for your answer and sorry that I did not check the rfNews. You are right, presently I am only looking at variable importance and therefore I am very happy to hear that I won`t have problems using ordered factors. Since I just started to fiddle around with randomForest it mi

[R] merging multiple data frames with different numbers of rows

2008-04-29 Thread stephen sefick
merge can only merge two objects at a time- I would like to merge more than two objects at a time. s.d <- structure(list(RiverMile = c(202L, 198L, 190L, 185L, 179L, 148L, 119L, 61L)), .Names = "RiverMile", row.names = c(NA, -8L), class = "data.frame") #s.d is all of the river miles that can occur

Re: [R] Get inside a function the name of a variable called as argument?

2008-04-29 Thread Duncan Murdoch
On 29/04/2008 9:53 AM, Julien Roux wrote: Hi list, I created a function to plot my data: plot_function(vector) I want to write the name of the argument vector in the legend/title of the plot. For example if I call: > plot_function(my_vector) I want "my_vector" to be written in the legend or ti

Re: [R] randomForest and ordered factors

2008-04-29 Thread Liaw, Andy
If you are using the latest version (4.5-25), you will see in rfNews() that that's the problem I need to fix. The package was able to handle ordered factors, but some more stringent checks for factor levels consistency introduced in 4.5-23 broke the support for ordered factors in prediction.

Re: [R] XML write?

2008-04-29 Thread Gabor Grothendieck
On Tue, Apr 29, 2008 at 10:20 AM, Alberto Monteiro <[EMAIL PROTECTED]> wrote: > > Gabor Grothendieck wrote: > > > > By write, do you mean print? > > > No, I mean "save to a file". > > I solved the problem with this: > > library(XML) > x <- xmlTreeParse("Irpf2008/aplicacao/dados/12345678901/12345678

Re: [R] XML write?

2008-04-29 Thread Alberto Monteiro
Gabor Grothendieck wrote: > > By write, do you mean print? > No, I mean "save to a file". I solved the problem with this: library(XML) x <- xmlTreeParse("Irpf2008/aplicacao/dados/12345678901/12345678901.xml") sink("ihatetheirs.xls") print(x) sink() and then I can edit the saved file to cut some

Re: [R] data management (subsetting and recombining)

2008-04-29 Thread stephen sefick
s.d <- structure(list(RiverMile = c(202L, 198L, 190L, 185L, 179L, 148L, 119L, 61L)), .Names = "RiverMile", row.names = c(NA, -8L), class = "data.frame") #s.d is all of the river miles that can occur in all of the data frames that I want to put together feb06 <- structure(list(RiverMile = c(202L, 1

Re: [R] XML write?

2008-04-29 Thread Jeffrey Horner
Alberto Monteiro wrote on 04/29/2008 08:37 AM: Is there any function to write a XML structure, after it was read using xmlTreeParse? Ex: library(XML) x <- xmlTreeParse("Irpf2008/aplicacao/dados/12345678901/12345678901.xml") # write it... Calling: library(help=XML) # or help(package=XML) li

Re: [R] XML write?

2008-04-29 Thread Gabor Grothendieck
By write, do you mean print? In that case using the basic.xml file that comes with the XML package: library(XML) basic.xml <- system.file("exampleData", "basic.xml", package = "XML") # try this con <- xmlTreeParse(basic.xml) root <- xmlRoot(con) root # or if you are using internal nodes: con

Re: [R] ggplot2: setting global graphic parameters with png driver

2008-04-29 Thread Prof Brian Ripley
You forgot to mention your version of R and your platform (and R has at least 3 separate png() devices). In 2.7.0, specify the size in inches and increase the resolution. In earlier versions, try bitmap(). From NEWS for 2.7.0 o Considerable efforts have been made to make the default outp

[R] Get inside a function the name of a variable called as argument?

2008-04-29 Thread Julien Roux
Hi list, I created a function to plot my data: plot_function(vector) I want to write the name of the argument vector in the legend/title of the plot. For example if I call: > plot_function(my_vector) I want "my_vector" to be written in the legend or title and so retrieve the name of this object

[R] ggplot2: setting global graphic parameters with png driver

2008-04-29 Thread Xavier Chardon
Hi all, I prepared a few charts with ggplot2, and was happy with the results as displayed on screen. I tried to draw them with a PNG driver instead. But I ran into several problems while trying to increase the resolution of the picture. Mainly, when I increased the picture size (e.g png(width

[R] XML write?

2008-04-29 Thread Alberto Monteiro
Is there any function to write a XML structure, after it was read using xmlTreeParse? Ex: library(XML) x <- xmlTreeParse("Irpf2008/aplicacao/dados/12345678901/12345678901.xml") # write it... Alberto Monteiro PS: please, brazilians, don't be offended by my foul language! ___

Re: [R] vioplot kernel smooth via density kernel smooth

2008-04-29 Thread Johannes Graumann
Johannes Graumann wrote: > Vioplots have great appeal to me, as they manage to squeeze so much > information into so little space ... > Now some evaluation has made me suspicious about the implementation in the > package vioplot and I would like to hear what you say about the appended > results

[R] How do I specify a model with nested random terms?

2008-04-29 Thread Ingrid . Mage
Dear R-users, I have problems specifying a model with nested random terms. I want to reproduce a variance component model made in Mintab, the model specification in Minitab is: Response = Prod P Prod*P Sample(Prod P) Extract(Prod P Sample) Random Prod Sample Extract The dataset is bala

[R] function to generate weights for lm?

2008-04-29 Thread tom soyer
Hi, I would like to use a weighted lm model to reduce heteroscendasticity. I am wondering if the only way to generate the weights in R is through the laborious process of trial and error by hand. Does anyone know if R has a function that would automatically generate the weights need for lm? Thank

Re: [R] How do you test for "consecutivity"?

2008-04-29 Thread Doran, Harold
How about this result <- numeric(10) for(i in 1:10){ x <- sample(1:30, 5, replace = FALSE) x <- sort(x) result[i] <- any(diff(x) == 1) } > -Original Message- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Anthony28 > Sent: Tuesday, April 29, 2008 8:52 AM > To:

Re: [R] Legend problem when exporting a plot to PDF

2008-04-29 Thread Joerg van den Hoff
On Tue, Apr 29, 2008 at 01:49:01PM +0200, Philipp Pagel wrote: > > > When exporting to PDF a graph with a legend, in the final PDF, the > > text is going beyond the legend box. > > > dev2bitmap("test.pdf", type="pdfwrite", h=6, w=6) > > The legend looks OK on the screen. I noticed that the size

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