How can I insert cross-references to odfWeave generated figures in my
source odf before the graphic has been created with odfWeave?
Many thanks,
Chris
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PLEASE do read the
On 2007-12-21, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote:
>
> Dear R users,
>
> I have just moved to R2.6.1 under Opensuse linux 10.3. I used to
> work with R under XPpro. Is it "normal" to have a visual aspect of R
> under linux different ?
Yes, that's normal. Under windows, you get a GUI int
I was thinking about my solve.qp problem on my way home tonight and I think
I can fix it by making Dmat the identity matrix. I'll check this weekend to
make sure
but my thinking is that doing this will make all the "variances" the same so
that they shouldn't come into play during the evaluation of
Check out the drc package.
Also, please read the last line to every message to r-help regarding
reproducible code
and note that function names are case sensitive in R so NLS is not the
same as nls.
On Dec 21, 2007 7:36 PM, <[EMAIL PROTECTED]> wrote:
> I am writing a program for automated (i.e. n
Dear all,
I'm trying to estimate the parameters of a special case of a poisson
model, where the specified equation has an integral and several fixed
parameters.
I think that the MLE command in STATS4 package could be a good choice,
but it's a little complicated. I've got some problems with the off
Dear all,
I'm trying to estimate the parameters of a special case of a poisson
model, where the specified equation has an integral and several fixed
parameters.
I think that the MLE command in STATS4 package could be a good choice,
but it's a little complicated. I've got some problems with the off
In the R.utils package there is seqToIntervals(), e.g.
print(seqToIntervals(1:10))
## from to
## [1,]1 10
print(seqToIntervals(c(1:10, 15:18, 20)))
## from to
## [1,]1 10
## [2,] 15 18
## [3,] 20 20
There is also seqToIntervals(), which uses the above, e.g.
print(seqToHuman
I was playing around with a simple example using solve.qp ( function is in the
quadprog package ) and the code is below. ( I'm not even sure there if there is
a reasonable solution because I made the problem up ).
But, when I try to use solve.QP to solve it, I get the error that D in the
quad
Martin Maechler wrote:
>> "MS" == Marc Schwartz <[EMAIL PROTECTED]>
>> on Thu, 20 Dec 2007 16:33:54 -0600 writes:
>
> MS> On Thu, 2007-12-20 at 22:43 +0100, Johannes Graumann wrote:
> >> Hi all,
> >>
> >> Does anybody have a magic trick handy to isolate directly consec
Marie Pierre Sylvestre wrote:
> Dear R users,
>
> I am analysing a very large data set and I need to perform several data
> manipulations. The dataset is so big that the only way I can play with it
> without having memory problems (E.g. "cannot allocate vectors of size...")
> is to write a batch s
[EMAIL PROTECTED] wrote:
> Dear All,
>
>> (1-p)==1
>
> [1] TRUE
>
> The main problem I have is that I need to evaluate the inverse of the normal
> Cumulative Distribution Function near 1 (but not exactly 1) and the PC cannot
> recognize it.
Evaluate it at 1, evaluate the density at 1, an
I am writing a program for automated (i.e. no user intervention - for
biologists) iteratively reweighted least-square fit to a function of the form
"reading ~ exp(lm2)/(1 + (dose/exp(lm3))^exp(lm4)" using case weight
proportional to the mean, e.g., E(reading).Because for some datasets the
s
Thanks, Hadley!
Regards, Ulrike
-- Original Message ---
From: "hadley wickham" <[EMAIL PROTECTED]>
To: "Ulrike Grömping" <[EMAIL PROTECTED]>
Cc: r-help@r-project.org
Sent: Fri, 21 Dec 2007 22:49:38 +
Subject: Re: [R] New Cran Task View: ExperimentalDesign
> And the url is:
hadley wickham presented the following explanation :
>> Perhaps as long as you're learning a new plotting system, you might also
>> check out whether ggplot2 might be an option.
>>
>> I did a quick and dirty version (which I'm sure Hadley can improve and
>> also remind me how to get rid of the leg
If we don't need any plotting we don't really need rect.hclust at
all. Split the output of cutree, instead. Continuing from the
prior code:
> for(el in split(unname(vv), names(vv))) print(el)
[1] 0.00 0.45
[1] 1
[1] 2
[1] 3.00 3.25 3.33 3.75 4.10
[1] 5
[1] 6.00 6.45
[1] 7.0 7.1
[1] 8
On Dec 21,
Also try the odiag function in the demogR package
odiag( 1:5, -1)
[,1] [,2] [,3] [,4] [,5] [,6]
[1,]000000
[2,]100000
[3,]020000
[4,]003000
[5,]000400
[6,]000
And the url is:
http://cran.r-project.org/src/contrib/Views/ExperimentalDesign.html
Hadley
On 12/21/07, Ulrike Grömping <[EMAIL PROTECTED]> wrote:
> Dear UseRs,
>
> the new Task View "ExperimentalDesign" (Title: Design of Experiments (DoE) &
> Analysis of Experimental Data) has just been uploaded
On Dec 21, 2007 3:58 PM, Jonas Malmros <[EMAIL PROTECTED]> wrote:
> I wonder if there is a function in R with which I can create a square
> matrix with elements off main diagonal (for example one diagonal below
> the main diagonal).
Try this and adjust the formula for other patterns:
> mm <- matr
Hi,
I am having trouble getting RMySQL running on a solaris machine.
[43] bedrock:/home/jayoung/source_codes/R/other_packages> uname -a
SunOS bedrock 5.10 Generic_118833-36 sun4v sparc SUNW,Sun-Fire-T200
I thought I had finally managed to get it installed, albeit with some
warnings that I didn'
On Fri, 21 Dec 2007, [EMAIL PROTECTED] wrote:
> Dear All,
>
>
>
> I have a numerical problem:
>
> R, as other statistical software, can tell the difference between very
> small numbers and 0, while apparently cannot distinguish a number close
> to 1 and 1. In the example below, is it possible to
Dear UseRs,
the new Task View "ExperimentalDesign" (Title: Design of Experiments (DoE) &
Analysis of Experimental Data) has just been uploaded to CRAN. It covers
packages that have functionalities for designing experiments or specific tools
for analyzing data from designed experiments. I hope that
Jonas Malmros wrote:
> Hi, everyone
>
> I wonder if there is a function in R with which I can create a square
> matrix with elements off main diagonal (for example one diagonal below
> the main diagonal).
>
> Thanks in advance!
>
>
You could combine rbind, diag and cbind:
rbind(rep(0,3),cbind(d
Sorry here's the good code:
forestplot=function(mean,std,conf,threshold){
z=-qnorm((1-conf)/2)
CI.H <- mean+z*std # Calculate upper CI
CI.L <- mean-z*std # Calculate lower CI
plot(mean,1:length(mean),xlim=c(min(CI.L),max(CI.H)),pch=15,cex=1,
ylab="",xlab="mean & CIs",main="Forest plot")
arrows(
Kazumi Maniwa uni-konstanz.de> writes:
>
> Hallo, I have this dataset with repeated measures. There are two
> within-subject factors, "formant" (2 levels: 1 and 2) and "f2 Ref" (25
> levels: 670, 729, 788, 846, 905, 1080, 1100, 1120, 1140, 1170, 1480,
> 1470, 1450, 1440, 1430, 1890, 1840,
Hi, everyone
I wonder if there is a function in R with which I can create a square
matrix with elements off main diagonal (for example one diagonal below
the main diagonal).
Thanks in advance!
--
Jonas Malmros
Stockholm University
Stockholm, Sweden
_
Answering my own query here's a solution (if any reader was curious):
forestplot=function(mean,std,conf,threshold){
z=-qnorm((1-conf)/2)
CI.H <- mean+z*sqrt(std) # Calculate upper CI
CI.L <- mean-z*sqrt(std) # Calculate lower CI
plot(mean,1:length(mean),xlim=c(min(CI.L),max(CI.H)),pch=15,cex=1,
Hm, hm, rect.hclust doesn't accept "plot=FALSE" and cutree doesn't retain
the indexes of membership ... anyway short of ripping out the guts of
rect.hclust to achieve the same result without an active graphics device?
Joh
>> # cluster and plot
>> hc <- hclust(dist(v), method = "single")
>> plot(h
Jim,
Although I can't find the post this code stems from, I had come across it on
my prowling the NG. It's not the one you had shared with me to eliminate
overlaps (and which I referenced below:
http://tolstoy.newcastle.edu.au/R/e2/help/07/07/21286.html). That
particular solution you had come up w
Thank you very much for this elegant solution to the problem. The reason I
still hope for an extension of Jim's code (not the one re responded with in
this thread, but the one I actually reference) is that windows of overlap
can be asymetric with that: one can check e.g. whether values overlap give
On 21/12/2007 2:52 PM, [EMAIL PROTECTED] wrote:
> Dear All,
>
>
>
> I have a numerical problem:
>
> R, as other statistical software, can tell the difference between very small
> numbers and 0, while apparently cannot distinguish a number close to 1 and 1.
> In the example below, is it possi
Dear All,
I have a numerical problem:
R, as other statistical software, can tell the difference between very small
numbers and 0, while apparently cannot distinguish a number close to 1 and 1.
In the example below, is it possible to instruct R to recognize that q is
different from 1?
> p=.
On 12/21/07, Spilak,Jacqueline [Edm] <[EMAIL PROTECTED]> wrote:
> Thanks Deepayan, this helped a lot and gave me exactly what I wanted
> however I want a few changes and am not sure how to do them. In each
> panel the bars for the years are the same color with the bottom axis
> (the x-axis) labell
useR's
I need transform the matrix
wdat
[,1] [,2] [,3] [,4] [,5] [,6]
[1,]010110
[2,]100110
[3,]000011
[4,]110010
[5,]111100
[6,]001000
to gal ob
Thanks Deepayan, this helped a lot and gave me exactly what I wanted
however I want a few changes and am not sure how to do them. In each
panel the bars for the years are the same color with the bottom axis
(the x-axis) labelled with the years. I would like each year to have a
specific color with
On Fri, 21 Dec 2007, Johannes Graumann wrote:
>
>
> Dear all,
>
> I'm trying to solve the problem, of how to find clusters of values in a
> vector that are closer than a given value. Illustrated this might look as
> follows:
>
> vector <- c(0,0.45,1,2,3,3.25,3.33,3.75,4.1,5,6,6.45,7,7.1,8)
>
> Wh
So you have to write a script that will not terminate until you 'press a
button or something like this'. That's easy to do, but as you haven't
told us your OS. E.g. on Windows, call winDialogString at the end.
On Fri, 21 Dec 2007, Philipp Fechteler wrote:
> Hello R friends
>
> I am quite impr
Dear R users,
I have just moved to R2.6.1 under Opensuse linux 10.3. I used to work with R
under XPpro.
Is it "normal" to have a visual aspect of R under linux different ? I mean
without a window with menus etc...
What I do is just open a console window and type R then I just obtain a:?? >??
Hello R friends
I am quite impressed by the power of R, I am using it only since some
weeks now. But its visualizing capabilities are outstanding!
But one thing I couldn't solve: I have programs producing lots of data,
most times 3D. In R I am using the library rgl to visualize nicely the
3D d
On Fri, Dec 21, 2007 at 10:46:39AM -0500, Wensui Liu wrote:
> HI, Gabor,
> what program do i need to compile R on unix?
At least a C compiler, maybe a Fortran compiler too.
Some standard Unix tools like make as well. See also:
http://cran.r-project.org/doc/manuals/R-admin.html
> local dir? do you
This may not be as direct as Jim's in terms of specifying granularity but
will uses conventional hierarchical clustering to create the clusters and also
draws a nice dendrogram for you. I have split the dendrogram at a
height of 0.5
to define the clusters but you can change that to whatever granu
Thank you Duncan (additional comments below),
>-Original Message-
>From: Duncan Murdoch [mailto:[EMAIL PROTECTED]
>Sent: December 20, 2007 02:36 PM
>To: Thompson, David (MNR)
>Cc: r-help@r-project.org
>Subject: Re: [R] Available environment variables
>
>On 20/12/2007 2:13 PM, Thompson, Da
By default, factors are characters and sorted in alphabetical order.
It looks like somehow you numeric data was converted to factors.
Therefore '10' comes before '2'. If you want the factors in numeric
order you have to convert them back. Look in the FAQs.
> x <- c(1,2,3,4,5,10,11,20,21,22,30)
>
Mary Christmas and happy new year to all contributors:-)
Michael
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal
On Thu, 20 Dec 2007, Kunio takezawa wrote:
> R-users
> E-mail: r-help@r-project.org
>
> I found the answer myself.
> '.Fortran("baklo",' in lo.wam() and .Fortran("bakfit",in
> s.wam() may carry out backfitting. But I cannot
> create an R code which gives the same results as those of
> "bakfit".
HI, Gabor,
what program do i need to compile R on unix?
local dir? do you mean dir under my user name with my profile?
On Dec 21, 2007 10:42 AM, Gabor Csardi <[EMAIL PROTECTED]> wrote:
> Well i don't know which Unix you have, but it shouldn't matter anyway.
> If you're able to compile programs on
Hello all:
I'm sorry to take up bandwidth with easy questions, but as an R
beginner, I continue to be surprised by factors. If someone can shed
some light for me, I'd be grateful:
> d
Total z02801 z02802 z02804 z02806 z02807 z02808 z02809 z02812 z02813
54813 29 51169 236810
Well i don't know which Unix you have, but it shouldn't matter anyway.
If you're able to compile programs on the machine then download
the R source, compile it and install it into your local directory.
Gabor
On Fri, Dec 21, 2007 at 10:25:36AM -0500, Wensui Liu wrote:
> Good morning, Dear Lister,
Hi,
I don't think you have given enough information for
anyone to offer advice.
A small working (or almost working ) exmple that
reproduces the problem would help.
--- Jiaming Zuo <[EMAIL PROTECTED]> wrote:
> Dear R Users,
>
> I am working for the United Nations to construct
> a complet
Here is a modification of the algorithm to use a specified value for
the overlap:
> vector <- c(0,0.45,1,2,3,3.25,3.33,3.75,4.1,5,6,6.45,7,7.1,8)
> # following add 0.5 as the overlap detection -- can be changed
> x <- rbind(cbind(value=vector, oper=1, id=seq_along(vector)),
+cbind(valu
Good morning, Dear Lister,
I really like to use R on our unix server. However, I am not an admin
of the system.
I am wondering if it is possible to install R on unix without admin previlege.
Thank you so much! Have a nice Xmas season!
__
R-help@r-projec
Hello,
I have a set of data which I currently represent graphically on a plot. To
do that, I use the embedded functions from the graphics package (symbols,
rect, etc.) However, I would like to use static jpeg images to represent the
data if possible. Here's my progress so far:
1. Used the rimage
> "MS" == Marc Schwartz <[EMAIL PROTECTED]>
> on Thu, 20 Dec 2007 16:33:54 -0600 writes:
MS> On Thu, 2007-12-20 at 22:43 +0100, Johannes Graumann wrote:
>> Hi all,
>>
>> Does anybody have a magic trick handy to isolate directly consecutive
>> integers from somethin
On 21/12/2007 12:07 AM, Rebecca Sela wrote:
> I am trying to optimize a likelihood function using NLMINB. After running
> without a problem for quite a few iterations (enough that my intermediate
> output extends further than I can scroll back), it tries a vector of
> parameter values NaN. Thi
Thanks Joe,
It works well. How can I expand the output of z to include all other classes
from 1 to nclass
Right now I the output is:
> z
truth
classified 4 5 8 10
1 1 1 1 0
4 6 10 8 0
10 1 0 1 1
> Is it possible to have something like:
[,1]
Hi the list...
I am working on cluster analysis, more precisely on Calinski and
Harabasz criterion
( C(g)=Trace(between)/Trace(Within)*(n-g)/(g-1)) )
Is there a package for calculating within and between matrix?
Morever, when we are using matrix with missing value, how do they
handle it? On a mo
First question: is this the right mailing list to discuss installation
problems?
if yes:
(Windows XP professional environment )
Installing a second packege after the first causes an error:
---
[snip snip snip]
> suppose I have two arrays x1,x2 of dimensions a1,b1,c1 and
> a2,b2,c2 respectively.
>
> I want x = x1 "+" x2 with dimensions c(max(a1,a2), max(b1,b2),max
> (c1,c2))
[snip snip snip]
perhaps it wouldn't be too much to ask for you to
check the most recent version of the "
[EMAIL PROTECTED] napsal dne 20.12.2007 16:33:05:
> Dear R-help,
>
> I have a data set consisting of measurements made on multiple
> subjects. Measurement sessions are repeated for each subject on
> multiple dates. Not all subjects have the same number of
> sessions. To create a factor that re
Some progress in my problem:
Samu Mäntyniemi kirjoitti:
> With MPICH2 I managed to connect my computers so that I was able to
> remotely launch Rgui on both machines but R hanged when calling
> "library(Rmpi)". If only one Rgui was launched on the localhost,
> "library(Rmpi)" worked without error
Dear all,
I'm trying to solve the problem, of how to find clusters of values in a
vector that are closer than a given value. Illustrated this might look as
follows:
vector <- c(0,0.45,1,2,3,3.25,3.33,3.75,4.1,5,6,6.45,7,7.1,8)
When using '0.5' as the proximity requirement, the following groups
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