Re: [R] Newbie help: Data in an arma fit

2007-10-22 Thread Moshe Olshansky
In such a case your question can be split into two stages: The first one is to read your file into R data.frame (let say) making sure that all "bad" entries are replaced by NA (missing value). This usually can be done and there are several ways of doing so. Stage two would be to check how the missi

Re: [R] Newbie help: Data in an arma fit

2007-10-22 Thread p
On Tue 23 Oct 07, 10:56 AM, Gad Abraham <[EMAIL PROTECTED]> said: > caffeine wrote: >> I'd like to fit an ARMA(1,1) model to some data (Federal Reserve Bank >> interest rates) that looks like: >> ... >> 30JUN2006, 5.05 >> 03JUL2006, 5.25 >> 04JUL2006, N < here! >> 05JUL2006, 5.

[R] Fatal error message in Windows version of 2.6

2007-10-22 Thread David Kaplan
Hi, I opened up R 2.6 and now I am receiving a message that says Fatal Error: Unable to restore saved data in .RData When I look at the console I see a message that says Error in .Call("R_lazyLoadDBfetch",...) Any thoughts? David -- ==

Re: [R] Elasticity in Leslie Matrix

2007-10-22 Thread Simon Blomberg
On Mon, 2007-10-22 at 06:24 -0700, privalan wrote: > Dear R-users, > > I would like to calculate elasticities and sensitivities of each parameters > involved in the following transition matrix: > > A <- matrix(c( > sigma*s0*f1, sigma*s0*f2, >s, v > ), nrow=2, byr

Re: [R] A very simple question

2007-10-22 Thread Tim Calkins
?save.image ?load HTH. tc On 10/23/07, David Kaplan <[EMAIL PROTECTED]> wrote: > Hi all, > > My apologies for a very simple question. I just downloaded > R 2.6.0. I want to bring in all of the objects from 2.5.0 > that I see when I type ls(). I have no idea how to do that. > > Thanks in advan

Re: [R] Newbie help: Data in an arma fit

2007-10-22 Thread Gad Abraham
caffeine wrote: > I'd like to fit an ARMA(1,1) model to some data (Federal Reserve Bank > interest rates) that looks like: > > > ... > 30JUN2006, 5.05 > 03JUL2006, 5.25 > 04JUL2006, N < here! > 05JUL2006, 5.25 > ... > > > One problem is that holidays have that "N" for their

[R] A very simple question

2007-10-22 Thread David Kaplan
Hi all, My apologies for a very simple question. I just downloaded R 2.6.0. I want to bring in all of the objects from 2.5.0 that I see when I type ls(). I have no idea how to do that. Thanks in advance. David -- === Dav

Re: [R] Repeated Measures/Linear Mixed Effects function

2007-10-22 Thread Jeff Miller
--- Begin Message --- Hi Keith, it seems like a good starting position. I recommend that you spend some time studying Pinheiro and Bates's book to see where t ogo from here. Cheers Andrew On Mon, Oct 22, 2007 at 02:58:51PM -0800, Keith Cox wrote: > I have three columns

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread jim holtman
It represents the subset of the data frame partitioned by 'x$quiz'. On 10/22/07, Matthew Dubins <[EMAIL PROTECTED]> wrote: > Yes!! That did it! > > Does .sub represent the different levels of the x$quiz indice? > > > > jim holtman wrote: > Is this what you were expecting? > by(x, x$quiz, functi

[R] question on axis box with asp=1

2007-10-22 Thread Dan Kelley
I've been using (and loving) R for quite a while now, but I have to admit that something simple is still stumping me. The question is how I can control the box within which a plot is drawn, in cases where I'm controlling the aspect ratio with the "asp" argument. The problem comes up in pdf(

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread Matthew Dubins
Yes!! That did it! Does .sub represent the different levels of the x$quiz indice? jim holtman wrote: > Is this what you were expecting? > > >> by(x, x$quiz, function(.sub) t.test(percent ~ group, data=.sub)) >> > x$quiz: 1 > > Welch Two Sample t-test > > data: percent by group

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread jim holtman
Is this what you were expecting? > by(x, x$quiz, function(.sub) t.test(percent ~ group, data=.sub)) x$quiz: 1 Welch Two Sample t-test data: percent by group t = 6.3228, df = 6.231, p-value = 0.0006306 alternative hypothesis: true difference in means is not equal to 0 95 percent confiden

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread Matthew Dubins
Hi, Following please find *some* of my data. percent quizgroup 100 1 High 100 1 High 100 1 High 25 1 Low 50 1 Low 75 1 High 50 1 Low 75 1 High 100 1 High 100 1 High 50 1

Re: [R] Repeated Measures/Linear Mixed Effects function

2007-10-22 Thread Andrew Robinson
Hi Keith, it seems like a good starting position. I recommend that you spend some time studying Pinheiro and Bates's book to see where t ogo from here. Cheers Andrew On Mon, Oct 22, 2007 at 02:58:51PM -0800, Keith Cox wrote: > I have three columns of data, Xc, Trt and fish. This was a repeat

[R] Unicode 16-bit, Lao

2007-10-22 Thread Schnitzler, Johannes
Dear all, I'm using R 2.6.0 Windows XP Access 2003 Lao Script for Windows 7.02 I'm trying to use Lao with R for 1) Chart Legend Labels 2) Writing out text for HTML pages With Lao Script for Windows it is possible to type Unicode (16-bit). The strings I want to use are stored in an Access dat

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread jim holtman
I think what you want to write is: by(your.df, quiz, function(.sub){ t.test(percent ~ group, data=.sub) } On 10/22/07, Matthew Dubins <[EMAIL PROTECTED]> wrote: > I've tried to use by(), but the closest i got to it doing what I wanted > was using the following: > > by(percent, quiz, functio

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread Julian Burgos
Could you post some of your data and your initial test, and explain why it didn't worked? It is difficult to figure out what is the problem with your call to by(). Julian Matthew Dubins wrote: > I've tried to use by(), but the closest i got to it doing what I wanted > was using the following:

Re: [R] How to format data for time-series analysis

2007-10-22 Thread Gabor Grothendieck
R News 4/1 which gives an overview of the date time classes. On 10/22/07, B. Bogart <[EMAIL PROTECTED]> wrote: > Hello all, > > I'm using R to visualize and explore the data produced by a software > system. The software generates logs for many types of events. The > software runs for days on end,

[R] Repeated Measures/Linear Mixed Effects function

2007-10-22 Thread Keith Cox
I have three columns of data, Xc, Trt and fish. This was a repeated measures design with 6 measurements taken from each of 5 fish. Xc is the actual measurement, Trt is the treatment, and fish is the fish number. Data can be seen below (hopefully it is in the column format). I would like to look

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread Matthew Dubins
I've tried to use by(), but the closest i got to it doing what I wanted was using the following: by(percent, quiz, function(percent) {t.test(percent~group, data=marks.long)}) But the results it gave me weren't t.tests of percent by group according to quiz number. Julian Burgos wrote: > See

Re: [R] How to format data for time-series analysis

2007-10-22 Thread jim holtman
I would suggest that you use POSIXct as the format for the date/time. This will give you resolution to almost a microsecond, so you should be able to differentiate between multiple sequencial events. As for reading it in, almost anything is reasonable; e.g., 2007/10/22 18:38:25.123456. You just h

Re: [R] Looped t.test results according to a subset variable

2007-10-22 Thread Julian Burgos
See by() Matthew Dubins wrote: > Hi all, > > I wrote a simple function that gives me multiple t.test results > according to a subset variable and am wondering whether or not I > reinvented the wheel. Observe: > > t.test.sub <- function (formula, data, sub, ...) > { > for(i in 1:ma

[R] Looped t.test results according to a subset variable

2007-10-22 Thread Matthew Dubins
Hi all, I wrote a simple function that gives me multiple t.test results according to a subset variable and am wondering whether or not I reinvented the wheel. Observe: t.test.sub <- function (formula, data, sub, ...) { for(i in 1:max(sub)) { print(t.test

Re: [R] Matrix manipulation

2007-10-22 Thread Julian Burgos
Matrices are not made of paper! :) If you index a matrix with negative numbers, you'll get back that matrix minus that column or row. A quick example: >a<-matrix(c(1:9),ncol=3) # Create a sample matrix >a# Display it [,1] [,2] [,3] [1,]147 [2,]2

Re: [R] Matrix manipulation

2007-10-22 Thread Tim Calkins
use the '-' feature. >mat <- matrix(rnorm(100), nrow = 10) #snip the second row >mat[-2,] #snip the third column >mat[,-3] #snip rows 5 and 7 >mat[-c(5,7),] cheers tc On 10/23/07, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: > Hi everyone, > > suppose I have a 2D matrix, is there a command to

[R] Matrix manipulation

2007-10-22 Thread yiferic
Hi everyone, suppose I have a 2D matrix, is there a command to snip out a specific row/column and then remerge the remaining columns/rows back into a contiguous matrix? I will need to repeat this operation quite a bit(reverse selection). Thanks for any insights you can offer. Yifei

[R] How to format data for time-series analysis

2007-10-22 Thread B. Bogart
Hello all, I'm using R to visualize and explore the data produced by a software system. The software generates logs for many types of events. The software runs for days on end, and can possibly generate multiple events per second. What is the appropriate time format for year, month, day, hour,

Re: [R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Henrique Dallazuanna
Hi, What is your data? I've tested with : df1 <- data.frame(x=rnorm(10), y=rnrom(10)) On 22/10/2007, Diogo Alagador <[EMAIL PROTECTED]> wrote: > > *Sorry Henrique* > ** > *But I'm affraid now the result was* > ** > ** > *x y* > *1 1 2* > *2 1 2* > *3 1 2* > *4 1 2* > *5 1 2* > *6

Re: [R] Bar plot with error bars

2007-10-22 Thread Daniel Nordlund
> -Original Message- > From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf > Of Katherine Jones > Sent: Monday, October 22, 2007 2:04 PM > To: [EMAIL PROTECTED] > Subject: [R] Bar plot with error bars > > Apologies if this has been asked before. I am having trouble > understanding

[R] Bar plot with error bars

2007-10-22 Thread Katherine Jones
Apologies if this has been asked before. I am having trouble understanding the R mailing list never mind R! I am relatively new to R having migrated from Minitab and SPSS. I have managed to do some more complicated statistics such as hierarchical partitioning of variance on an 80,000 record

[R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-22 Thread David Airey
. I would love more quality online documentation around the same level as at UCLA (http://www.ats.ucla.edu/stat/; the Stata pages are fantastic), but I think I would like the first draft responsibility to fall to the well qualified instructor (Hi Matt!), and those with at least a Masters i

Re: [R] Help interpreting output of Rprof

2007-10-22 Thread Thomas Lumley
On Mon, 22 Oct 2007, Dieter Best wrote: > Hello there, > > I am not quite sure how to interpret the output of Rprof (in the following the > output I was staring at). I was poking around the web a little bit for >documentation but without much success. I guess if I want to figure out what >takes

Re: [R] Help interpreting output of Rprof

2007-10-22 Thread Duncan Murdoch
On 10/22/2007 2:36 PM, Dieter Best wrote: > Hello there, > > I am not quite sure how to interpret the output of Rprof (in the following > the output I was staring at). I was poking around the web a little bit for > documentation but without much success. I guess if I want to figure out what > t

[R] RODBC problem: sqlSave not working after an update

2007-10-22 Thread Pat Carroll
Good day, all. I just upgraded to R 2.6.0. I re-installed my most-used packages including RODBC to be sure I'm up-to-date. I have been working with a large insurance claims dataset stored in a MS-Access database on a Windows machine. I have been regularly exporting tables from R into it using s

Re: [R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Diogo Alagador
Sorry Henrique But I'm affraid now the result was x y 1 1 2 2 1 2 3 1 2 4 1 2 5 1 2 6 1 2 I think we are very close to the solution. But it isn't this one!!! Where should I look for? Sorry for the inconvenience, Diogo André Alagador Portugal from: Henrique

Re: [R] save as pdf

2007-10-22 Thread Rainer Hurling
It seems that you are using R-2.6.0 under Windows. Then this error has been discussed before. There is a patched version on CRAN. Look at http://cran.r-project.org/bin/windows/base/rpatched.html Hope this helps, Rainer Denis Aydin schrieb: > Hello, > > I just wanted to save a graphic in the

Re: [R] formatting a list

2007-10-22 Thread jim holtman
Does this do what you want? > x <- scan(textConnection('1 2 3 4 5 + 6 7 8 9 0 + 9 8 7 6 5 + 4 3 2 1 0'), what=rep(list(0),5)) Read 4 records > x [[1]] [1] 1 6 9 4 [[2]] [1] 2 7 8 3 [[3]] [1] 3 8 7 2 [[4]] [1] 4 9 6 1 [[5]] [1] 5 0 5 0 > # create a matrix and then 'lapply' each column to make

Re: [R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Henrique Dallazuanna
Hi Diogo, teste <- function(x){ if(!is.list(x))stop("A list is needed") df_out <- matrix(0, ncol=ncol(x[[1]]), nrow=nrow(x[[1]])) for(i in 1:ncol(x[[1]])){ df_out[,i] <- apply(do.call("rbind", lapply(x, "[[", i)), 2, median) } return(df_out) } x <-

[R] Howard Harris k-means

2007-10-22 Thread Joseph Retzer
I've been searching for R code which performs the Howard Harris variant of k-means clustering but cannot seem to locate it. The Hartigan-Wong algorithm seems quite similar but not the same. Does anyone know of code that would accomplish this? The algorithm looks simple enough to implement mys

Re: [R] formatting a list

2007-10-22 Thread Tomas Vaisar
Hi Chuck, I am running the Windows version R-2.5.1. I will upgrade and will let you know what the deal was. Your output definitely looks right. Thanks, Tomas Charles C. Berry wrote: > > Tomas, > > Are you using R-2.6.0 ?? > > Each method works for me producing as list of 7000 vectors. > > Th

Re: [R] formatting a list

2007-10-22 Thread Charles C. Berry
Tomas, Are you using R-2.6.0 ?? Each method works for me producing as list of 7000 vectors. The file I used to test this is created by: for (i in 1:7000) cat( seq(from=i,by=1,length=19),"\n", sep='\t',file="tmp.tab",append=TRUE) The first line is: > scan("tmp.tab",nlines=1) Read 19 i

[R] Help interpreting output of Rprof

2007-10-22 Thread Dieter Best
Hello there, I am not quite sure how to interpret the output of Rprof (in the following the output I was staring at). I was poking around the web a little bit for documentation but without much success. I guess if I want to figure out what takes so long in my code the 2nd table $by.total and th

Re: [R] format.data.frame and NA control

2007-10-22 Thread Peter Dalgaard
Sebastian P. Luque wrote: > Hi, > > Is there a more efficient way to output NA strings as empty strings in > format.data.frame than this: > > ---<---cut here---start-->--- > R> tt <- data.frame(a=c(NA, rnorm(8), NA), b=c(NA, letters[1:8], NA)) > R> tt <- format(t

Re: [R] Spatial autocorrelation

2007-10-22 Thread Julian Burgos
Hi Geertje, You should look into linear mixed-effects models. In these you can incorporate spatial correlation explicitly. The basic function to use is lme(), but you should do some reading about this type of models before jumping into it. An excellent resource is the book "Mixed Effects Mo

[R] Meta-analysis mixed model

2007-10-22 Thread Diane Srivastava
I have a meta-analysis dataset which I would like to analyze as a mixed model, where the y-variable is a measure of effect size, the random effect is the study from which the effect size was extracted, and the fixed effect is a categorical explanatory variable. The complication is that we often hav

Re: [R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Diogo Alagador
Hi Henrique, Much thanks (obrigado!!!) for your quick answer, I have built a function from you suggestions that took the following script: teste=function(...){ df_out = matrix(0, ncol=ncol(..1), nrow=nrow(..1)); for(i in 1:ncol(..1)){ df_out[,i] = apply(do.call("rbind", lapply(list(...), "[[",

[R] format.data.frame and NA control

2007-10-22 Thread Sebastian P. Luque
Hi, Is there a more efficient way to output NA strings as empty strings in format.data.frame than this: ---<---cut here---start-->--- R> tt <- data.frame(a=c(NA, rnorm(8), NA), b=c(NA, letters[1:8], NA)) R> tt <- format(tt, digits=5, trim=TRUE) R> tt

Re: [R] grouping rows into bin ranges

2007-10-22 Thread Thibaut Jombart
Muri Soares wrote: >Hi everyone, > >I have a matrix that contains 1000 replicates of a sample of a list of values. >I want to group each row (row=replicate) into my defined bin ranges and then >calculate the mean and stdev for each of the bin ranges (so I will have 1000 >rows but ncol=number of

Re: [R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-22 Thread Matthew Keller
I appreciate the input. Off-list, someone suggested that I set up a class wiki, and have this be the first sieve. I could do some quality control there first (perhaps sending the link to this list serve at the end of the semester for others to check over), and then post the final manuals on the R w

Re: [R] formatting a list

2007-10-22 Thread Tomas Vaisar
Hi Chuck, thanks for your responses. I did not ignore your suggestions - I did try them and they did not produce what I need. The first one produced table with the same format as a read.table would generate, not not a list of lists. Second one gave me an error after returning Read 19 items m

Re: [R] retrieve version information for a package?

2007-10-22 Thread Gabor Grothendieck
Try: packageDescription("affy")$Version On 10/22/07, Yupu Liang <[EMAIL PROTECTED]> wrote: > Hi, > > I am looking for a way to find out the version information of > installed R packages. > ex: > > >library(affy) > >SOME_COMMAND_FOR_VERSION(affy) > > I know I can do either getRversion() or R.Ver

Re: [R] Elasticity in Leslie Matrix

2007-10-22 Thread Chris Stubben
> I would like to calculate elasticities and sensitivities of each parameters > involved in the following transition matrix: > > A <- matrix(c( > sigma*s0*f1, sigma*s0*f2, >s, v > ), nrow=2, byrow=TRUE,dimnames=list(stage,stage)) > > The command "eigen.analysis" a

Re: [R] retrieve version information for a package?

2007-10-22 Thread Henrique Dallazuanna
packageDescription(pkg="affy")$Version On 22/10/2007, Yupu Liang <[EMAIL PROTECTED]> wrote: > > Hi, > > I am looking for a way to find out the version information of > installed R packages. > ex: > > >library(affy) > >SOME_COMMAND_FOR_VERSION(affy) > > I know I can do either getRversion() or R.Ve

Re: [R] retrieve version information for a package?

2007-10-22 Thread Weiwei Shi
try sessionInfo() On 10/22/07, Yupu Liang <[EMAIL PROTECTED]> wrote: > Hi, > > I am looking for a way to find out the version information of > installed R packages. > ex: > > >library(affy) > >SOME_COMMAND_FOR_VERSION(affy) > > I know I can do either getRversion() or R.Version() could give me t

[R] retrieve version information for a package?

2007-10-22 Thread Yupu Liang
Hi, I am looking for a way to find out the version information of installed R packages. ex: >library(affy) >SOME_COMMAND_FOR_VERSION(affy) I know I can do either getRversion() or R.Version() could give me the version of R. I assume there must be a way for me to get version information fo

Re: [R] formatting a list

2007-10-22 Thread Charles C. Berry
Tomas, Three different ways to create a list of 7000 vectors from a file of 7000 rows and 19 columns are given here: http://article.gmane.org/gmane.comp.lang.r.general/97032 which I think is what you are asking for. If you truly need a list of 7000 lists each of length 1 containing a

Re: [R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Henrique Dallazuanna
Perhaps: [[1]] x v 1 1 1.0565171 2 2 -0.8273003 3 3 1.0614944 4 4 2.6897433 5 5 0.7371014 6 6 -1.3192476 [[2]] x v 1 1 1.7267265 2 2 -0.2470332 3 3 -0.1667343 4 4 -0.4970180 5 5 -1.0597913 6 6 0.3742491 [[3]] x v 1 1 1.3846207 2 2 0.7995231 3 3 -0.681851

Re: [R] plot3d with more than 8 colors

2007-10-22 Thread Birgit Lemcke
Am 22.10.2007 um 17:19 schrieb Duncan Murdoch: > On 10/22/2007 9:54 AM, Birgit Lemcke wrote: >> Hello R user and helper! >> I would like to get a 3d plot with coloured points. >> I did that: >> colors<-c(rep("2",7), rep("3",12), rep("4", 24), rep("5", 13), rep >> ("6", 8), rep("7", 51), rep("8"

[R] grouping rows into bin ranges

2007-10-22 Thread Muri Soares
Hi everyone, I have a matrix that contains 1000 replicates of a sample of a list of values. I want to group each row (row=replicate) into my defined bin ranges and then calculate the mean and stdev for each of the bin ranges (so I will have 1000 rows but ncol=number of bin ranges). I don't kno

Re: [R] plot3d with more than 8 colors

2007-10-22 Thread Duncan Murdoch
On 10/22/2007 9:54 AM, Birgit Lemcke wrote: > Hello R user and helper! > > I would like to get a 3d plot with coloured points. > > I did that: > > colors<-c(rep("2",7), rep("3",12), rep("4", 24), rep("5", 13), rep > ("6", 8), rep("7", 51), rep("8", 1), rep("9", 15), rep("10", 53), rep > ("11",

[R] anova and contratst

2007-10-22 Thread Colm G.Connolly
Hi everybody, I'm using the gmodels package to convert human readable contrasts into the format required by R and would be grateful if someone could confirm for me whether I've got the contrasts right in the sample code below. I'm working on the assumption that the contrasts are index accor

Re: [R] formatting a list

2007-10-22 Thread Tomas Vaisar
Hi Jim, I really appreciate your help. From the input file I have - 19 columns, 7000 rows - the scan gives me the desired format of a list consisting of 19 lists with 7000 values each. However I need a list of 7000 lists with 19 values each. (e.g. each row of my input file should be a separate

[R] median value dataframe coming from multiple dataframes

2007-10-22 Thread Diogo Alagador
Hi all, I am not a skillful R programmer and has I am handling with large dataframes (about 3 x 300) I am in need of an efficient function. I have 4 dataframes with the same dimension. I need to generate other dataframe with the some dimension than the others where in each position it has

Re: [R] "Estimate effects may be unbalanced" in aov()

2007-10-22 Thread Peter Dalgaard
Max Manfrin wrote: > On 22 Oct 2007, at 10:50, Prof Brian Ripley wrote: > >> On Mon, 22 Oct 2007, Max Manfrin wrote: >> >>> Can anybody explain me what does it mean "Estimated effects may be >>> unbalanced", and what does it imply for the anova analysis? >> >> The help page does! I suspect you int

Re: [R] ANOVA within a GAMM framework

2007-10-22 Thread Simon Wood
This comparison is just as valid as it is for a regular linear mixed model, which is all that the GAMM is in this case --- the smoothing parameters are just variance components in your example. In general you have to be a bit careful with generalized likelihood ratio tests involving variance

Re: [R] controlling plot range

2007-10-22 Thread Thomas Lumley
On Fri, 19 Oct 2007, John Sorkin wrote: > > As Marc points out, the documentation does say that usr can only be set > by par. Perhaps the R development team would consider modifying the code > of plot to check for the usr parameter, and if found print an error > message. Unfortunately it's not

Re: [R] inference from dual frame surveys using R

2007-10-22 Thread Thomas Lumley
I don't know of any package that does dual-frame surveys. The survey package does not (at the moment). -thomas On Mon, 22 Oct 2007, eugen pircalabelu wrote: > Good afternoon! > > My question is more of a "is there a package for doing?" an > inference regarding the mean, medi

[R] ANOVA within a GAMM framework

2007-10-22 Thread Maik Eisenbeiß
Hi R user, I am using the gamm() function of the mgcv-package. Now I would like to decide on the random effects to include in the model. Within a GAMM framework, is it allowed to compare the following two models inv_1<-gamm(y~te(sat,inv),data=daten_final, random=list(proband=~1)) inv_2

[R] How to use a specifical graphical device (e.g., png, bmp) with R version 2.5.1under Linux

2007-10-22 Thread HU,ZHENGJUN
Hi All, I am now using R version 2.5.1 under Linux (Red Hat), and have some problems to use some graphical devices (e.g., png, jpeg, bmp and so on). Can you tell/teach me how to solve the problem(s)? See below for details. (1) I make sure that package:grDevices is on the list using search()

[R] plot3d with more than 8 colors

2007-10-22 Thread Birgit Lemcke
Hello R user and helper! I would like to get a 3d plot with coloured points. I did that: colors<-c(rep("2",7), rep("3",12), rep("4", 24), rep("5", 13), rep ("6", 8), rep("7", 51), rep("8", 1), rep("9", 15), rep("10", 53), rep ("11",3), rep("12",3), rep("13", 8), rep("14", 90), rep("15", 8), re

Re: [R] Normalized data

2007-10-22 Thread Klaus Friis Østergaard
2007/10/22, Petr PIKAL <[EMAIL PROTECTED]>: > > Hi > > [EMAIL PROTECTED] napsal dne 22.10.2007 14:01:14: > > > Hi, > > > > I need to calculate either Error or Normalized values based on the > following > > principle: > > > > Error = Observed value - reference value > > Normalized value = Observed V

Re: [R] Spatial autocorrelation

2007-10-22 Thread Thibaut Jombart
Geertje Van der Heijden wrote: >Hi, > >I have collected data on trees from 5 forest plots located within the >same landscape. Data within the plots are spatially autocorrelated >(calculated using Moran's I). I would like to do a ANCOVA type of >analysis combining these five plots, but the assumpti

Re: [R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-22 Thread Ari Friedman
Just want to chime in and say that I think it's a great idea. It is, after all, a wiki, and even the bad entries will serve to be something like stubs that can be expanded upon by others and they play with them. When using e.g. the Gentoo wiki, I have run across some well-organized entries (a

Re: [R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-22 Thread John Kane
--- Ricardo Pietrobon <[EMAIL PROTECTED]> wrote: > Bill, very interesting comment. However, do you > believe that by posting > these tutorials on a wiki they could, even if > initially faulty, be improved > by the community over time? > > Ricardo > As a new user to R it strikes me that some o

[R] Having problems with the lme function

2007-10-22 Thread Rodrigo Gazaffi
Dear R-users: I have some problems working with lme function, and i would be glad if anyone could help me. this kind of analysis i was used to do with PROC MIXED from SAS, but i would like to move to R, for many reasons... So, the problem is: Imagine the I have 3 factors: fact_A, fact_B and fact

[R] Elasticity in Leslie Matrix

2007-10-22 Thread privalan
Dear R-users, I would like to calculate elasticities and sensitivities of each parameters involved in the following transition matrix: A <- matrix(c( sigma*s0*f1, sigma*s0*f2, s, v ), nrow=2, byrow=TRUE,dimnames=list(stage,stage)) The command "eigen.analysis" av

[R] Odp: Normalized data

2007-10-22 Thread Petr PIKAL
Hi [EMAIL PROTECTED] napsal dne 22.10.2007 14:01:14: > Hi, > > I need to calculate either Error or Normalized values based on the following > principle: > > Error = Observed value - reference value > Normalized value = Observed Value - Part average > > appraiser <- rep(rep(1:3,c(3,3,3)),10) >

Re: [R] Input appreciated: R teaching idea + a way to improve R-wiki

2007-10-22 Thread Bill.Venables
Possibly. I find it difficult to argue the case either way in the abstract, though. I think once you see some of the outcomes, it will become clear which are good enough for posting and which are not. Bill Venables. _ From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of R

Re: [R] strsplit

2007-10-22 Thread Dirk Eddelbuettel
On 22 October 2007 at 00:43, Edna Bell wrote: | Hello R Gurus: | | I would like to take a character string and split at the $ sign. | | I thought that strsplit would do it, but here are the results: | | > vv | [1] "whine$ts1" | > vv | [1] "whine$ts1" | > strsplit(vv,"$") | [[1]] | [1] "whine$ts

[R] inference from dual frame surveys using R

2007-10-22 Thread eugen pircalabelu
Good afternoon! My question is more of a "is there a package for doing?" an inference regarding the mean, median, regression estimates, etc. by using the information from dual frame surveys? (this methodology is based on the work of BANKIER 1986, SKINNER 1991, LOHR and RAO 2000...)

Re: [R] How to plot with txt or symbol instead of number as x-axis scale ?

2007-10-22 Thread Eric Thompson
There are probably much more fancy ways to do this, but since no one else has posted a response, here's what I would do: > plot(seq(10, 40, 10), axes = FALSE) > axis(1, at = 1:4, lab = LETTERS[1:4]) > axis(side = 2) > box() On 10/20/07, Yong Wang <[EMAIL PROTECTED]> wrote: > Dear R-list > > My q

[R] beginner's tutorial, books, etc re: time-series analysis, ARMA/ARIMA models...

2007-10-22 Thread Millo Giovanni
Thomas, may I also suggest, from the Documentation>Contributed section of CRAN, "Econometrics in R" by Grant Farnsworth http://cran.at.r-project.org/doc/contrib/Farnsworth-EconometricsInR.pdf (see the chapter on Time series) and, in case you can read Italian, "Analisi delle serie storiche con R

[R] Normalized data

2007-10-22 Thread Klaus Friis Østergaard
Hi, I need to calculate either Error or Normalized values based on the following principle: Error = Observed value - reference value Normalized value = Observed Value - Part average appraiser <- rep(rep(1:3,c(3,3,3)),10) trail <- rep(rep(1:3,3),10) part <- rep(1:10,c(9,9,9,9,9, 9,9,9,9,9)) value

[R] Spatial autocorrelation

2007-10-22 Thread Geertje Van der Heijden
Hi, I have collected data on trees from 5 forest plots located within the same landscape. Data within the plots are spatially autocorrelated (calculated using Moran's I). I would like to do a ANCOVA type of analysis combining these five plots, but the assumption that there is no autocorrelation in

[R] having problems with the lme function

2007-10-22 Thread Rodrigo Gazaffi
Dear R-users: I have some problems working with lme function, and i would be glad if anyone could help me. this kind of analysis i was used to do with PROC MIXED from SAS, but i would like to move to R, for many reasons... So, the problem is: Imagine the I have 3 factors: fact_A, fact_B and fact

Re: [R] X matrix deemed to be singular in counting process coxph

2007-10-22 Thread caspar
Dear Terry Thanks for your reply, I guess then including only the interaction term only should make sense, since a difference in group 1 between t=0 and t=1 is already taken into account in the baseline (all coefficients set to zero). My second group as I understand it should have an exp(coef_g

Re: [R] save as pdf

2007-10-22 Thread Paul Smith
On 10/22/07, Denis Aydin <[EMAIL PROTECTED]> wrote: > I just wanted to save a graphic in the pdf-format. But id failed: > > Fehler: Invalid font type > Zusätzlich: Warning messages: > 1: font family not found in PostScript font database > 2: font family not found in PostScript font database > > I u

[R] save as pdf

2007-10-22 Thread Denis Aydin
Hello, I just wanted to save a graphic in the pdf-format. But id failed: Fehler: Invalid font type Zusätzlich: Warning messages: 1: font family not found in PostScript font database 2: font family not found in PostScript font database I use R 2.6.0 with all packages updated recently. Any idea?

Re: [R] "Estimate effects may be unbalanced" in aov()

2007-10-22 Thread Max Manfrin
On 22 Oct 2007, at 10:50, Prof Brian Ripley wrote: On Mon, 22 Oct 2007, Max Manfrin wrote: Can anybody explain me what does it mean "Estimated effects may be unbalanced", and what does it imply for the anova analysis? The help page does! I suspect you intended to use factors, and have no

Re: [R] "Estimate effects may be unbalanced" in aov()

2007-10-22 Thread Prof Brian Ripley
On Mon, 22 Oct 2007, Max Manfrin wrote: Can anybody explain me what does it mean "Estimated effects may be unbalanced", and what does it imply for the anova analysis? The help page does! I suspect you intended to use factors, and have not done so, and also that you did not intend to replicat

Re: [R] Substitute in function calling a function

2007-10-22 Thread Prof Brian Ripley
I am not sure what the general rule you are looking for is. Using deparse(substitute()) gets you the print-value of the expression (in your case a name) for the actual argument. But if you want to go back generations of calls, then just when do you stop? What you can do is write fun2 to use s

Re: [R] Substitute in function calling a function

2007-10-22 Thread Felix Andrews
I think the usual thing would be to pass substitute(x) or deparse(substitute(x)) from the original function (fun2 in your example). But if you really want to, you can do fun <- function(x) eval.parent(call("substitute", substitute(x))) On 10/22/07, Steve Powell <[EMAIL PROTECTED]> wrote: > Dear

[R] "Estimate effects may be unbalanced" in aov()

2007-10-22 Thread Max Manfrin
Can anybody explain me what does it mean "Estimated effects may be unbalanced", and what does it imply for the anova analysis? Here a case example of what I get. > D<-expand.grid(A=c(0,1,2,3),B=c(0,1),C=c(0,1),res=c(runif(30,0,1))) > aov(res~A*B*C,data=D) Call: aov(formula = res ~ A * B * C

[R] (no subject)

2007-10-22 Thread Max Manfrin
Can anybody explain me what does it mean "Estimated effects may be unbalanced", and what does it imply for the anova analysis? Here a case example of what I get. > D<-expand.grid(A=c(0,1,2,3),B=c(0,1),C=c(0,1),res=c(runif(30,0,1))) > aov(res~A*B*C,data=D) Call: aov(formula = res ~ A * B *

[R] Substitute in function calling a function

2007-10-22 Thread Steve Powell
Dear list members, I am writing some functions to help with printing graphs. If I want to return the name of a variable within a function, for instance to print the label for a graph, I know that I can use substitute: fun=function(x) substitute(x) #plus of course some other processing var=1:3 fu