a definite
identification of R CMD check and other special calls (e.g. in \Sexpr in Rd
files).
Bests,
Renaud
2012/12/18 Spencer Graves
> Have you considered the CRAN function in "fda"? Spencer
>
>
>
> On 12/18/2012 4:00 AM, Henrik Bengtsson wrote:
>
>> Hi Ren
Hi,
is checking out R SVN trunk the recommended way to keep up to date with
R-devel and check packages with the latest version?
My objective is to be able to have both R and R-devel versions
installed/working and up to date.
R-devel binaries would be available as symlinks in my home directory so
t it?
When compiling from source, R and R-devel coexist happily if one specifies
an installation prefix other than the default. What other conflict could
happen?
Renaud
2013/2/27 Dirk Eddelbuettel
>
> On 27 February 2013 at 12:08, Renaud wrote:
> | is checking out R SVN trunk the
2005
month09
day 24
svn rev 35666
language R
akima:
Package: akima
Version: 0.4-5
Date: 2005-07-21
Best,
Renaud
2005/10/3, [EMAIL PROTECTED] <[EMAIL PROTECTED]>:
> Full_Name: Jonathan Lees
> Version: 2.0.1
> OS: linux-gnu
> Submission fr
Hi,
is there a way to define a method say '$$' that would behave like '$'
and allow calls like 'a$$name'?
Thanks.
Renaud
--
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Computational Biology - University of Cape Town
South Africa
###
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Does there exist any symbol that would be suitable for the job?
Thanks
--
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Computational Biology - University of Cape Town
South Africa
On 09/07/2010 14:29, Duncan Murdoch wrote:
On 09/07/2010 8:18 AM, Renaud Gaujoux wrote:
Hi,
is there a way to define a method say '$$'
would be for a...@slot1[['toto']]
- a$tata would be for a...@slot2[['tata']]
But apparently it might not be possible.
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
On 09/07/2010 14:58, Marc Schwartz wrote:
You were, in effect, trying to
'a$builtin.member'.
I will try to work out a solution from all the suggestions I got from
the list.
Thanks again to all.
Renaud.
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
On 10/07/2010 17:29, Marc Schwartz wrote:
On Jul 10, 2010, at 7:24 AM, Barr
Dear Kevin,
I often use Epi Info to develop questionnaires and databases with MSc
/ PhD students for the purpose of field surveys. It's straightforward
to send queries in the Epi Info databases (MS Access format) and
retrieve data using packages like RODBC.
All the best,
Renaud
2010
and speed. The result is theoretically the same.
Thank you,
Renaud
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
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on our website at http://www.uct.ac
Thank you Duncan for your reply.
Currently I am using 'double' for the computations.
What type should I use for extended real in my intermediate computations?
The result will still be 'double' anyway right?
On 10/09/2010 13:00, Duncan Murdoch wrote:
On 10/09/2010 6:4
Ok.
I quickly tried using LDOUBLE wherever I could, but it did not changed
the results. I might try harder...
I agree with you Barry, and I will re-double re-check my code.
Thank you both for your help.
Bests,
Renaud
On 10/09/2010 13:24, Barry Rowlingson wrote:
On Fri, Sep 10, 2010 at 11:46
0.0 to see if it makes a difference.
What do you mean by
"You also need to be careful about
conversion from integer to real, to do double conversion."
?
Where are the trap in this type of conversion?
Thanks.
Renaud
On 10/09/2010 16:07, Paul Gilbert wrote:
With fortran I have always m
datasets methods
[8] base
other attached packages:
[1] fortunes_1.4-0
--
Renaud Lancelot
EDEN Project, coordinator
http://www.eden-fp6project.net/
UMR CIRAD-INRA "Contrôle des maladies animales exotiques et émergentes"
Joint research unit "Control of emerging and exotic animal d
?
Renaud
2010/10/3 Duncan Murdoch :
> On 03/10/2010 12:23 PM, Renaud Lancelot wrote:
>>
>> Dear all,
>>
>> I have a problem with an Rd file containing French accentuated
>> characters. I have uploaded the file at
>> http://filex.cirad.fr/get?k=cjW7lImMaNC6Ci
I see C:/R\R-2.11.1\share\texmf\Rd.sty which is my current R
installation. By the way, there is no error during the compilation
with
R CMD Rd2dvi --no-clean dja.Rd
So, it looks that the problem is located elsewhere...
Thank you for your help.
All the best,
Renaud
2010/10/3 Duncan Murdoch
/10/3 Renaud Lancelot :
> I see C:/R\R-2.11.1\share\texmf\Rd.sty which is my current R
> installation. By the way, there is no error during the compilation
> with
>
> R CMD Rd2dvi --no-clean dja.Rd
>
> So, it looks that the problem is located elsewhere...
>
> Thank you
ce if library() could do it locally (e.g. pass the
argument), without changing the global settings.
Thanks,
Renaud
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function(i, j, k){
print( empty.arg(j) )
print(nargs())
}
would result in:
foo(i) # FALSE, 1
foo(i, ) # TRUE, 2
foo(i, j) # FALSE, 2
foo(i, k=2) # FALSE, 2
foo(i, k=2, ) # TRUE, 3
Thank you for any help or pointer.
Bests,
Renaud
###
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My purpose is indeed to write a '[' method.
I will go for the `[.data.frame` solution then.
Thank you.
On 25/01/2011 12:53, Prof Brian Ripley wrote:
On Tue, 25 Jan 2011, Renaud Gaujoux wrote:
Hi,
is there an easy, robust, and/or recommended way to distinguish a
missing argume
the list methods [, $, etc...).
Thank you.
Bests,
Renaud
# define S4 class that inherits from list
setClass('A', contains='list')
# nothing to say when one creates an object with an unnamed list
x <- new('A', list(1,2,3))
x
# set the names: seems ok but they are
Hi,
is there a reason why `slot<-` should duplicate its argument?
I am under R 2.12.1.
Thank you,
Renaud
For example:
setClass('A', representation(data='matrix'))
a <- new('A')
x <- matrix(1,2,3)
tracemem(x)
slot(a, 'data') <- x
###
UNIV
lized. All this should be done in
.onLoad, but I cannot do it due to this behaviour of `extends`.
Can someone provide some explanations or work around.
Thank you,
Renaud
# script.R
setClass('A', representation(data='numeric'))
setClass(&#
ading.
- why things seemed to work ok in R-2.12.1 at the installation loading
check, but do not work when loading the package from an R session?
Could you please briefly give some explanations or pointers?
Thank you.
Bests,
Renaud
On 23/06/2011 18:44, John Chambers wrote:
The workaround is to use
nks (result of getClass).
However, this does not explain why .onLoad does not find the class while
.onAttach finds it, does it?
Is .onLoad evaluated outside the namespace environment, while .onAttach
is evaluated within the namespace?
Thank you.
Renaud
###
UNIVERSITY OF CAPE TOWN
Th
On 27/06/2011 14:27, Simon Urbanek wrote:
On Jun 27, 2011, at 3:17 AM, Renaud Gaujoux wrote:
On 24/06/2011 22:04, John Chambers wrote:
Strictly speaking, that is not meaningful. A class (like any R object) is uniquely referenced by a
name *and an environment*. The name of a package can be
All is clear now.
Thank you for this clarification.
Cheers,
Renaud
On 27/06/2011 15:38, Simon Urbanek wrote:
On Jun 27, 2011, at 8:43 AM, Renaud Gaujoux wrote:
On 27/06/2011 14:27, Simon Urbanek wrote:
On Jun 27, 2011, at 3:17 AM, Renaud Gaujoux wrote:
On 24/06/2011 22:04, John Chambers
Locals(e, cntxt))
genCode(e, cntxt)
}
My guess is that the function findLocals or genCode can not handle a
2-length expression vector.
Maybe somebody who knows the internals of these functions could explain
better this behaviour?
How can I concatenate two expressions into a single one?
Th
Thank you very much Steve.
Your suggestion works perfectly -- at least with doSEQ, doMC and doMPI.
Bests,
Renaud
On 28/06/2011 15:35, Stephen Weston wrote:
I think that the result of the concatenation should be a call object,
rather than an expression object. How about something along the
encountered a similar issue?
Thank you.
Renaud
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crete examples of the issues you talked with other
developers?
Thank you.
Renaud
On 17/08/2011 12:45, Tim Triche, Jr. wrote:
> yes -- doMC (and doSMP) are kind of bogus and I just use
> multicore::mclapply() to good effect these days. I checked around
> with other people doing similar
operation wedges. I'm told
> that doSMP really only works well with Revolution R, but per above, I
> will try to put together a working self-contained example to show how.
>
>
> On Wed, Aug 17, 2011 at 4:39 AM, Renaud Gaujoux <mailto:ren...@cbio.uct.ac.za>> wrote:
>
ovide optional separate logging as doMPI does?
(I guess this might be better posted to R-hpc)
Thank you.
Renaud
On 17/08/2011 14:56, Brian G. Peterson wrote:
On Wed, 2011-08-17 at 04:50 -0700, Tim Triche, Jr. wrote:
I'll see if I can put together a self-contained example. Primarily,
the ti
P and Vista) however the symbol information does not change
(same pointer address) and the package data is NULL.
See results for both systems below. I tested this with R 2.12.1, 2.13.0
and 2.13.1 on Windows.
Is this a normal behaviour for dll loaded on Windows?
Thank you.
Renaud
#
called on the same symbol (see test code
below. Each sequence needs to be run on on a fresh R session).
Things works perfectly under Linux.
Thank you for any explanation on the matter.
Renaud
## SEQUENCE 1 ##
library(rstream)
getNativeSymbolInfo('user_unif_rand&#
lts are different (see
below: the first returns the complete information, the second has a NULL
element package).
I noticed other issues which makes very difficult to predict which DLL
will actually be resolved (e.g. when one plays with loading/unloading
packages that provides the hook), but I gu
od for print", instead
of the actual package name (see below for the first rows).
Is this normal behaviour? If so, is there a way to get what I want: a
character vector mapping class to package (ideally in loading order,
but this I can re-order from search
A? I don't get any warning
message and there seems to be only one entry in the relevant
.__S3MethodsTable__.
Aren't these tables updated when the masking package B is detached?
On 7 July 2015 at 21:01, Martin Morgan wrote:
> On 07/07/2015 02:05 AM, Renaud Gaujoux wrote:
>>
&g
; Kevin Wright
>
>
> On Wed, Jul 8, 2015 at 5:09 AM, Renaud Gaujoux
> wrote:
>> Thank you for your reply Martin.
>> Your code made me realize that S3 methods are added to the
>> .__S3MethodsTable__. of the package that defines the generic, not to
>> the ones defi
the user that there could be issues due to
version discrepancy.
Thank you.
Bests,
Renaud
## Code
library(devtools)
unlink('test', recursive = TRUE)
dir.create('test/lib', recursive = TRUE)
# create packages
createA <- function(version){
dir.create(file.path('test&
ter-a-res
Thank you.
Bests,
Renaud
My settings are:
R version 3.2.3 (2015-12-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 15.10
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_ZA.UTF-8LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_ZA.UTF-8LC_MES
r ..." except for visible
methods. Is this the expected behavior?
See code and output below.
Thank you.
Bests,
Renaud
$ Rscript -e "library(xtable); attr(.S3methods('plot'), 'info');
sessionInfo()"
visible from generic
intercept trait01 mesure0 interact
0.271534.1363 -5.5777 0.0075 -0.1809
s.e. 0.1211 0.6685 0.9009 0.03420.0490
--
Prof. Olivier Renaud http://www.unige.ch/fapse/mad/
Methodology & Data Analysis - Psychology Dept - University of Geneva
UniM
t be
run.
"
Thank you.
Bests,
Renaud
## Example ###
# no error as expected
shell('notacommand')
shell('notacommand', intern=TRUE)
# error as expected
shell('notacommand', mustWork = TRUE)
# I am expecting to get an error here as well, but none is thrown
shell(&#
Hi,
when mixing newline and backspace characters I get the following output
(see below). In the second call, the backspace character is simply not
applied. Is this normal behaviour?
Thank you.
> cat("abc\b")
ab> cat("abc\b\n")
abc
>
[[alternative HTML version deleted]]
_
:
> cat("abc\b\b\b")
> c
Here, I end up with the cursor being on the 'c', i.e. if I type something
it erase the 'c'.
It is strange that the 'c' appears _after_ the console prompt, isn't it?
Renaud
On 1 November 2013 13:41, Sean O'Riorda
Maybe it's a Linux problem:
> cat("abc\b")
ab> cat("abc\b\n")
abc
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8LC_MESS
e was an error though, but only asked if this was
normal behaviour, and apparently many standard Linux terminals get it
wrong. This looks a bit sad for a very terminal-driven OS.
Renaud
[[alternative HTML version deleted]]
__
R-devel@r-project.org
> Anyway,
> thanks for all the experiments, and (to Renaud) support.rstudio.org is
> the place to report such problems.
>
Funny how the post diverged to an RStudio-related issue.
Anyway, I posted a link to this post at support.rstudio.org:
http://support.rstudio.org/help/discussions/p
= TRUE)?
* is there a reason why the hooks are not called on quit?
Thank you.
Bests,
Renaud
###
> Sys.info()
sysname release
version
"Linux"
"3.11.0-12-generic" "
Many thanks for all responses and clarification!
It worked great by defining a dummy environment in the package
namespace and calling reg.finalizer to "attach" the cleanup function
to it.
Bests,
Renaud
On 6 November 2013 13:54, Prof Brian Ripley wrote:
> On 06/11/2013 11:36, D
inly not worth the effort anyway!
I guess we can happily close this thread :D
Many thanks.
Bests,
Renaud
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definition) but could not find its definition, and can't see how
setMethod will know for which '[' to define the method. Defining a
method for signature(x = 'A', j = 'missing') has the same issue.
Is there actually a way to do this?
Thank you.
Bests,
Renaud
Hi,
is it intended that one cannot install packages in non-interactive mode,
without explicitly setting a CRAN mirror (see below)?
Couldn't a default mirror be used in that case?
Thank you.
Bests,
Renaud
$ Rscript --vanilla -e "install.packages('whatever')"
Installing p
Hi,
it seems that my proxy settings are not picked up by the R console any
longer, although the environment variable http_proxy is set and
exported.
Is anybody experiencing this issue as well?
Thank you.
Bests,
Renaud
# System info (from R --vanilla)
> sessionInfo()
R version 3.0.3 (2014-03
All right, just ignore this silly post, things magically came back
into place... :|
On 27 March 2014 17:28, Renaud Gaujoux wrote:
> Hi,
>
> it seems that my proxy settings are not picked up by the R console any
> longer, although the environment variable http_proxy is set and
>
intended.
Thank you.
Bests,
Renaud
## File: traceback.R
a <- function(...){ stop('this is an error') }
# code to generate the long call
# set.seed(123)
# v <- unique(replicate(10, { paste0(sample(letters[1:26]), collapse = "") }))
# sprintf("a(%
.
Thank you.
Bests,
Renaud
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ile, although in may case users actually get
it through a personal CRAN-like repository, using argument
type='both'.
Thank you.
Bests,
Renaud
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-- and in PATH.
Renaud
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greed completely. I really like R cross-platform packaging and
checking system, and was just wondering if this conditional
compilation option was possible using the flexibility of this very
system.
Renaud
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.
Subsequent calls to install.packages() complain about src/contrib/PACKAGES
not existing, although there still is a src/contrib/PACKAGES.gz file.
Is this a know issue?
Thank you.
Bests,
Renaud
[[alternative HTML version deleted]]
__
R-devel@r
t happened.
Closing the thread.
Thanks.
On 6 December 2014 at 02:23, Gabriel Becker wrote:
> Can you post exact code, i have not seen this behavior, and I work with
> local repositories quite extensively on my current project.
>
> ~G
>
> On Fri, Dec 5, 2014 at 7:4
t Deepayan did not tell anybody about it ;) )
The help page ?completion in the utils package explains how to enable it:
utils::rc.settings(ipck=TRUE)
It simply worked on my Ubuntu box -- and directly went in my .Rprofile :)
Hope this helps.
Renaud
--
Renaud Gaujoux
Computational Biology - Universi
) but these are always somehow escaped when
generating the Latex file.
Is there a way to go around these issues? Maybe I am not using the
correct way.
Thank you.
Renaud
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
__
ecking step.
Not sure why it does not break before.
Thank you.
Renaud
PS: I am on R version 2.13.2 (2011-09-30) - x86_64-pc-linux-gnu (64-bit)
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
__
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R-rc_2011-10-27_r57452.tar.gz.
Renaud
On 28/10/2011 17:25, Duncan Murdoch wrote:
On 28/10/2011 10:53 AM, Duncan Murdoch wrote:
On 28/10/2011 10:49 AM, Renaud Gaujoux wrote:
> Hi,
>
> another Rd related issue I encountered is that if an error occurs
in an
> \Sexpr in an Rd f
I do not see it on main CRAN home page.
Do you mean http://cran.r-project.org/src/base-prerelease/R-latest.tar.gz ?
On 31/10/2011 14:19, Uwe Ligges wrote:
On 31.10.2011 13:13, Renaud Gaujoux wrote:
Thank you Duncan.
I tried with:
* using R version 2.14.0 RC (2011-10-24 r57417)
* using
Thank you very much Duncan, Uwe and Peter.
Sorry if I missed the announcement, I follow more r-devel than r-help,
which I find a bit hard to quickly read.
Will try now on the 2.14.0.
Renaud
On 31/10/2011 14:28, Prof Brian Ripley wrote:
On Mon, 31 Oct 2011, Renaud Gaujoux wrote:
I do not
g in R CMD check:
* checking examples ... ERROR
Error in paste(before, x, after, sep = "") : object 'exfile' not found
Execution halted
The two first issues can be reproduced with a call to R CMD Rd2pdf on
the Rd code below.
Thank you.
Renaud.
%%%
\name{Sexpr}
\alias{Sexpr
ybe this is not what 'results=verbatim' is supposed to do nor to
be used for?
Renaud
Another test Rd file.
%
\name{Sexpr}
\alias{Sexpr}
\title{Error and verbatim in Sexpr}
\description{
Testing Sexpr in Rd files
%\Sexpr[results=verbatim, stage=render]{stop("er
Although I use Latex quite a lot, I am not literate in Latex macro
languages (e.g. the definition of AsIs).
Is there (I am sure there is) a reason why a plain verbatim environment
is not used in this case?
On 03/11/2011 14:19, Duncan Murdoch wrote:
On 11-11-03 7:58 AM, Renaud Gaujoux wrote
ith \if{format}{text}?
This would allow to generate custom Latex, or HTML code, but it might
also be is hazardous...
Renaud
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
On 03/11/2011 15:50, Georgi Boshnakov wrote:
Dear Duncan and Renauld,
The error caused by t
On 03/11/2011 16:28, Duncan Murdoch wrote:
On 03/11/2011 10:21 AM, Renaud Gaujoux wrote:
Thank you Georgi.
With the fix \long the output is indeed consistent with the
documentation.
I think my use of cat() worked by luck as its output should not have
been rendered.
Would a 'result
On 03/11/2011 16:33, Georgi Boshnakov wrote:
Dear Renalud,,
Would a 'results=tex' (html, text) be possible? or 'results=source' that
could be combined with \if{format}{text}?
This may well be a clean approach.
After my previous email, I looked again at the definition of thr \AsIs macro.
Its
his is the result of tools:::Rd_expr_PR(1234):",
tools:::Rd_expr_PR(1234), sep="")}
\rdVerb{paste("This is the result of tools:::Rd_expr_PR(1234):",
tools:::Rd_expr_PR(1234), sep="\n")}
But backslashes must be escaped twice:
\rdVerb{"\begin{section
More or less in the same vein as Henrik's post, is it possible to detect
that a function is being called in an \Sexpr when generating an Rd file?
Thank you
--
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Computational Biology - University of Cape Town
South Africa
__
R-de
n) citation. Romain, I think I will submit a patch for this.
Hope this helps.
Renaud
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a fix for this now.
Renaud
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On 19/12/2011 15:56, Michael Friendly wrote:
On 12/19/2011 2:02 AM, Renaud Gaujoux wrote:
Hi,
I actually adapted and integrated this feature into Achim's -- nice
-- function (p
uld at least deal with
the slot `names` and not convert the object to a standard list, which is
troublesome.
Is there a reason why these operators are not pre-defined in namedList?
Thank you.
Renaud
##
setClass('A', contains='namedList')
a <- new(&
ed to work behind
a proxy (correct?).
Does anybody else have this problem?
I was wondering if there is a way around, as I would like to be able to
use --as-cran for my checks.
Thank you.
Renaud
--
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Computational Biology - University of Cape Town
So
actual university
proxy, not natively supported by my system (Ubuntu). Anybody in this case?
Thanks.
Renaud
On Tue, 17 Apr 2012, Henrik Bengtsson wrote:
> On Tue, Apr 17, 2012 at 1:01 AM, Renaud Gaujoux
> wrote:
> > Hi,
> >
> > when I run R CMD check with flag --as-cr
On 23/04/2012 17:39, Prof Brian Ripley wrote:
On 18/04/2012 16:04, Joshua Ulrich wrote:
Hi Renaud,
On Wed, Apr 18, 2012 at 12:22 AM, Renaud Gaujoux
wrote:
Hi Henrik,
Could anybody behind a proxy check if the issue can be reproduced?
My proxy is in fact provided by cntml, which acts as
Thanks Henrik for the work around.
It worked perfectly and save me lots of check time.
Renaud
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
On 24/04/2012 17:57, Henrik Bengtsson wrote:
Looking at the source code (src/library/tools/R/check.R and
src/library
tatus
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -std=gnu99 -m32 -I/home/renaud/bin/R/2.15/lib64/R/include
-I/home/renaud/bin/R/2.15/lib64/R/include/i386 -DNDEBUG
-DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1
-DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_C
Hi again,
following my previous post on RCurl, I cannot install Rcpp either:
g++ -m32 -I/home/renaud/bin/R/2.15/lib64/R/include
-I/home/renaud/bin/R/2.15/lib64/R/include/i386 -DNDEBUG
-I../inst/include/ -I/usr/local/include-fpic -g -O2 -c r_cast.cpp
-o r_cast.o
g++ -m32 -shared -L/usr
:
$ sudo apt-get install ia32-libs-dev lib32readline6-dev
lib32ncurses5-dev lib32icu-dev gcc-multilib gfortran-multilib
[sudo] password for renaud:
Reading package lists... Done
Building dependency tree
Reading state information... Done
Package ia32-libs-dev is not available, but is referred to by
On 11/06/2012 03:43, Simon Urbanek wrote:
> On Jun 10, 2012, at 9:24 PM, Dirk Eddelbuettel wrote:
>
>> On 8 June 2012 at 12:27, Renaud Gaujoux wrote:
>> | PS: Dirk do you want me to post this on the Rcpp list for record?
>>
>> Yes, that generally is where Rcpp quest
Dirk, who thinks this should have been on r-sig-debian all along
Moved to r-sig-debian as suggested:
https://stat.ethz.ch/pipermail/r-sig-debian/2012-June/001885.html
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de of primitive function or are these
pure C functions, which need to be searched for in R source code?
Renaud
--
Renaud Gaujoux
Computational Biology - University of Cape Town
South Africa
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e hence completely transparent, which would
simplify the installation of such packages, as the user would not need
to know that a repository other than CRAN is required.
Resolution could make use of the function chooseBioCMirror to ask the
user to select her preferred mirror, as it is done for the CRA
Hi,
on R version 2.15.1 (2012-06-22) (Platform: i686-pc-linux-gnu (32-bit))
sourced functions have srcref attached as an attribute.
Are such data also available for S4 generics and methods? How? (See
sample code below)
Thank you.
Bests,
Renaud
f <- textConnection(
"
f <
tandardGeneric('myfun'))
setMethod('myfun', 'numeric', function(x, ...){ 'myfun,numeric' })
")
source(f, keep.source=TRUE)
# there are srcref data for functions
str(f)
# no srcref data
str(attr(myfun, 'srcref'))
str(attr(selectMethod(myfun, 'numer
Hi Henrik (and list),
I am interested in a similar feature, and would be happy to see the
suggestions you got off-line :)
Have you come up with a robust solution, which would work in a variety
of situations (in examples, tests, \Sexpr calls, etc..)?
Thank you.
Bests,
Renaud
--
Renaud
packages:
[1] stats graphics grDevices utils datasets methods base
Is this normal? Am I doing something wrong?
Hadley, this is problematic for devtools, because load_all tries to cleanup
S4 classes when an error occurs when loading a development package and
crashes with no hint
> and
> >> crashes with no hint on the original error.
>
>
I guess a quick fix for devtools, would be to wrap the cleanup procedure
into a try or tryCatch (Hadley?).
Thanks,
Renaud
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number) and sys.source (has no line number).
Thank you,
Renaud
# code
codefile <- tempfile()
write("# some comment
# some good lines
a <- 1
# a bad line
stop('an error')
# another good line
b <- 2
", file=codefile)
# with source() the line number
All good then.
Thanks.
Renaud
2013/3/19 Martin Maechler
> >>>>> "RG" == Renaud Gaujoux
> >>>>> on Sun, 17 Mar 2013 10:38:44 +0200 writes:
>
> RG> Late report is better than never isn't it? :)
> >>
TRUE or the error location won't be known.
>
> I'll fix the difference you noticed after 3.0.0 is released; I think it is
> not serious enough to slip in at this point.
>
> Duncan Murdoch
>
>
>
>> Hadley
>>
>> On Tue, Mar 19, 2013 at 4:03 AM, R
extra functionality provided by package C, at lazy-load time, which means
it must be loaded via .onLoad (right?). In this case, clearly, one would
have package C as Depends, which then would not give rise to the issue I
have here.
Thank you.
Bests,
Renaud
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