Re: [Rd] different compilers and mzR build fails

2016-12-21 Thread Martin Morgan
On 12/21/2016 01:56 PM, lejeczek wrote: I do this on a vanilla-clean R installation, simply: biocLite("mzR") it pulls some deps in which compile fine, only mzR fails. ... meanwhile... I grabbed devtools and comiled github master - still fails. Should I attach build log? One should not send att

Re: [Rd] different compilers and mzR build fails

2016-12-21 Thread lejeczek via R-devel
I do this on a vanilla-clean R installation, simply: > biocLite("mzR") it pulls some deps in which compile fine, only mzR fails. ... meanwhile... I grabbed devtools and comiled github master - still fails. Should I attach build log? One should not send attachments to the list.. I don't suppose?

Re: [Rd] different compilers and mzR build fails

2016-12-21 Thread Martin Morgan
mzR is a Bioconductor package, so better to ask on the Bioconductor support forum https://support.bioconductor.org Oh, I see you did, and then the advice is to avoid cross-posting! The missing .o files would have been produced in an earlier compilation step; they likely failed in some way,

[Rd] different compilers and mzR build fails

2016-12-21 Thread lejeczek via R-devel
I'm not sure if I should bother you team with this, apologies in case it's a bother. I'm trying gcc 6.2.1 (from devtoolset-6) with R, everything seems to work just fine, except for mzR. Here is failed build: g++ -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o mzR.so cramp.o ramp_base64.o ram