One way to deal with this is to install R itself with mpicc. Then all
packages are installed with mpicc and get the required MPI libraries and
includes by default. I have done this with R-2.13.0 on an Opteron
cluster running CentOS-5 a while ago and so far it has worked out great.
I crosspost t
Hi,
I wanted point out the the Rmpi package needs 281 lines in it's
configure.ac file
that are specifically written for each major MPI distribution, and that
this could be replaced with exactly 2 lines in Makevars.in:
CC=mpicc SHLIB_LD=mpicc.
Here's the entire patch to Makeconf.in (4 new lines):
effect, because
> the values are clobbered by /etc/R/Makeconf. Will the following
> changes to Makeconf.in introduce any problems?
>
> --Michael
>
>
> Subject: [Rd] R CMD INSTALL configure.args and CC customization
> From: Paul Johnson (paul...@gmail.com)
> D
ues are clobbered by /etc/R/Makeconf. Will the following
changes to Makeconf.in introduce any problems?
--Michael
Subject: [Rd] R CMD INSTALL configure.args and CC customization
From: Paul Johnson (paul...@gmail.com)
Date: Jan 20, 2010 11:30:44 am
List: org.r-project.r-devel
Hi, ev
Hi, everybody.
I hope the new year is treating you well.
In a Rocks Cluster Linux system (that's Centos 5.2 based), I have
built R-2.10 and it runs well.
While fiddling with MPI libraries and R packages, I've noticed a few
little wrinkles.
This comes as no surprise to the veteran R programmers,
