Re: [Rd] R under deveoplment CMD check note " ... used in a situation where it does not exist"

2015-01-14 Thread Peter Langfelder
Apologies... missed Michal's email and the discussion of the same topic. Thanks, Peter On Wed, Jan 14, 2015 at 6:15 PM, Peter Langfelder wrote: > Hi all, > > just installed the current version of R-devel (2015-01-13 r67453) from > CRAN. Package checking via CMD check suddenly prints a lot of no

[Rd] R under deveoplment CMD check note " ... used in a situation where it does not exist"

2015-01-14 Thread Peter Langfelder
Hi all, just installed the current version of R-devel (2015-01-13 r67453) from CRAN. Package checking via CMD check suddenly prints a lot of notes that complain of ... used in a situation where it does not exist. A prototypical example is fa = function(...) { fb(...) } where fa and fb are defi

Re: [Rd] Is the tcltk failure in affylmGUI related to R bug 15957

2015-01-14 Thread peter dalgaard
Seems unlikely that that particular bug is involved. I seem to recall some change related to inadvertent variable capture in .TkRoot$env (?). At any rate, we currently have > parent.env(.TkRoot$env) which used to be > parent.env(.TkRoot$env) as a result, this won't work any more because R_E

Re: [Rd] Request for help with UBSAN and total absense of CRAN response

2015-01-14 Thread Martyn Plummer
On Tue, 2015-01-13 at 10:34 -0600, Dirk Eddelbuettel wrote: > On 13 January 2015 at 08:21, Dan Tenenbaum wrote: > | Where should the package source be downloaded from? I see it in CRAN (but > presumably the latest version that causes the issue is not yet downloadable) > and in github. > > The "p

Re: [Rd] R CMD check: "..." used in a situation where it does not exist

2015-01-14 Thread Duncan Murdoch
On 14/01/2015 4:47 AM, Hadley Wickham wrote: > I think this is bug in R CMD check code. I get a similar error: > > rule: possible error in paste0(...): ... used in a situation where it > does not exist > > for the simple: > > rule <- function(..., pad = "-") { > if (nargs() == 0) { > ti

Re: [Rd] R CMD check: "..." used in a situation where it does not exist

2015-01-14 Thread Hadley Wickham
I think this is bug in R CMD check code. I get a similar error: rule: possible error in paste0(...): ... used in a situation where it does not exist for the simple: rule <- function(..., pad = "-") { if (nargs() == 0) { title <- "" } else { title <- paste0(...) } width <- getO

[Rd] Is the tcltk failure in affylmGUI related to R bug 15957

2015-01-14 Thread Keith Satterley
I maintain the package affylmGUI. It works when installed on many previous versions of R. I have today tested exactly the same code under R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel. I have also tested the versions of affylmGUI downloaded by biocLite for each version of R and the

[Rd] R CMD check: "..." used in a situation where it does not exist

2015-01-14 Thread Michal Burda
Dear R developers, when running R CMD check, the R Under development (unstable) (2015-01-13 r67453) gives me the following NOTE: cbind.fsets: possible error in list(...): ... used in a situation where it does not exist The file that causes this note contains: cbind.fsets <- function(..., dep