Re: [Rd] duplication regression (?)

2014-04-15 Thread Michael Lawrence
This went off-list, but a patch has been submitted to fix the issue. On Mon, Apr 14, 2014 at 4:12 AM, Scott Kostyshak wrote: > Below is an example of output that changed as a result of r64970. I > did not see any NEWS item suggesting this change is expected. > > Note that the example is contrive

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Gregory R. Warnes
I have, at times, been a heavy user of R CMD Sweave and would prefer to see it fixed! I encountered this error while preparing notes for a guest lecture last fall, and was too busy to identify the source of the error, so worked around it (thank goodness for version control, making file resto

[Rd] ASCIIfy() - a proposal for package:tools

2014-04-15 Thread Arni Magnusson
Hi all, I would like to propose the attached function ASCIIfy() to be added to the 'tools' package. Non-ASCII characters in character vectors can be problematic for R packages, but sometimes they cannot be avoided. To make packages portable and build without 'R CMD check' warnings, my soluti

[Rd] Problem: Importing two packages which export a function with the same name

2014-04-15 Thread Benjamin Hofner
Hi all, I am currently updating our package gamboostLSS which depends on package mboost *and* on package gamlss.dist. From mboost we use a lot of the fitting infrastructure and from gamlss.dist we obtain the relevant loss functions (aka families) used for fitting and corresponding quantile fu

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Hadley Wickham
> I use Rscript, and I expect most others do too, but I was wrong about how > long this went unreported. Martin Morgan reported it in February in R-devel > and I didn't notice. He even gave a link to it in a message in March on > another topic; I replied to the March message, but didn't follow th

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Duncan Murdoch
On 15/04/2014 8:12 AM, peter dalgaard wrote: On 15 Apr 2014, at 13:14 , Duncan Murdoch wrote: > On 14/04/2014, 10:23 AM, Marc Schwartz wrote: >> Hi Martin, >> >> Thanks for your confirmation on this. >> >> I normally do not use R CMD Sweave, as I too run under ESS in normal day to day operatio

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Gábor Csárdi
On Tue, Apr 15, 2014 at 7:14 AM, Duncan Murdoch wrote: > On 14/04/2014, 10:23 AM, Marc Schwartz wrote: > >> Hi Martin, >> >> Thanks for your confirmation on this. >> >> I normally do not use R CMD Sweave, as I too run under ESS in normal day >> to day operations. This finding was a quirk of having

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread peter dalgaard
On 15 Apr 2014, at 13:14 , Duncan Murdoch wrote: > On 14/04/2014, 10:23 AM, Marc Schwartz wrote: >> Hi Martin, >> >> Thanks for your confirmation on this. >> >> I normally do not use R CMD Sweave, as I too run under ESS in normal day to >> day operations. This finding was a quirk of having a

Re: [Rd] R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

2014-04-15 Thread Duncan Murdoch
On 14/04/2014, 10:23 AM, Marc Schwartz wrote: Hi Martin, Thanks for your confirmation on this. I normally do not use R CMD Sweave, as I too run under ESS in normal day to day operations. This finding was a quirk of having a particular Rnw document that I occasionally run using R CMD Sweave an