[Rd] trace with reference class

2013-04-29 Thread Kohske Takahashi
Hi The final line of the example in ?setRefClass induces an error: > ## debugging all objects from class mEdit in method $undo() > mEdit$trace(undo, browser) Error in envRefInferField(x, what, getClass(class(x)), selfEnv) : 'undo' is not a valid field or method name for reference class "refGene

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-29 Thread Duncan Murdoch
On 29/04/2013 7:43 AM, Paul Gilbert wrote: Being generally uninformed about Windows, I have to admit to almost total confusion trying to follow this thread. However, since I have recently been trying to do something in Windows, I would appreciate a newbie friendly explanation of a few points: -R

Re: [Rd] R 3.0, Rtools3.0,l Windows7 64-bit, and permission agony

2013-04-29 Thread Paul Gilbert
Being generally uninformed about Windows, I have to admit to almost total confusion trying to follow this thread. However, since I have recently been trying to do something in Windows, I would appreciate a newbie friendly explanation of a few points: -Rtools is used to build R and to build (so

Re: [Rd] lsfit: Error in formatting error message

2013-04-29 Thread Renaud Gaujoux
Ah yes, nice, I had noticed the swapped words in other situations, it will definitely help me to tell users about sample size issues... :) Bests, Renaud On 29 April 2013 12:15, Uwe Ligges wrote: > On 25.04.2013 13:29, Renaud Gaujoux wrote: > >> Hi, >> >> in R-3.0 I get the following error when

Re: [Rd] lsfit: Error in formatting error message

2013-04-29 Thread Uwe Ligges
On 25.04.2013 13:29, Renaud Gaujoux wrote: Hi, in R-3.0 I get the following error when calling lsfit with more observations than variables, which seems to come from an error in the formatting of the error message (note that this was not happening in 2.15.3): nobs <- 5; nvar <- 6; lsfit(matrix(

Re: [Rd] Loss of identified points

2013-04-29 Thread Prof Brian Ripley
On 29/04/2013 02:54, Terry Therneau wrote: Minimizing and then restoring a window that contains identified points leads to an error on my linux box. See the posting guide. NEWS in R-patched says • In R 3.0.0, identify() and locator() did not record information correctly, so replayin

Re: [Rd] cause 'invalid permissions'

2013-04-29 Thread Prof Brian Ripley
On 28/04/2013 17:00, Maxpar Lin wrote: Hi folks, I am writing a package in C. It works most of the time, but fails occasionally by the segfault looking like: address 0x7f55302e2700, cause 'invalid permissions' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R w

[Rd] cause 'invalid permissions'

2013-04-29 Thread Maxpar Lin
Hi folks, I am writing a package in C. It works most of the time, but fails occasionally by the segfault looking like: address 0x7f55302e2700, cause 'invalid permissions' Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving

[Rd] Loss of identified points

2013-04-29 Thread Terry Therneau
Minimizing and then restoring a window that contains identified points leads to an error on my linux box. > sessionInfo() R version 3.0.0 (2013-04-03) Platform: i686-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8LC_COLLATE=C [5] LC_MON