[Rd] Errors in R CMD check for R 2.8.0

2008-10-25 Thread dxc13
useR's, I get these 2 errors when I run "R CMD check" on my package, and I cannot figure out how to get around them. Does anyone have any ideas? If it is of any help, I use Windows XP. ... * checking replacement functions OK * checking foreign function calls ... OK * checking R code for po

[Rd] write.csv(..., col.names = FALSE) (PR#13202)

2008-10-25 Thread stefan . albrecht
Full_Name: Stefan Albrecht Version: 2.7.2 (and 2.8.0) OS: Windows NT Submission from: (NULL) (194.127.8.17) Dear R Debug-Team, in write.csv() it is not possible to set both row.names = FALSE, col.names = FALSE since the col.names = FALSE gets overwritten: > write.csv function (...) { Call

[Rd] Compilation error when X11 is off (PR#13206)

2008-10-25 Thread ybryukhov
Full_Name: Yegor Bryukhov Version: 2.8.0 OS: Linux Submission from: (NULL) (69.22.221.161) in file src/platform.c line 1657 - a semi-colon is missing for the case when X11 is turned off __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman

[Rd] R CMD Rd2dvi (PR#13200)

2008-10-25 Thread Rowan . Haigh
Hello, I can build packages with R-2.8.0 but I cannot run the code: R CMD Rd2dvi --pdf --no-clean =20 Error message: .: Can't open C:/Apps/R/R280/share/sh/dcf.sh: No such file or directory The system cannot find the path specified. =20 The above code works fine in R-2.7.2. =20 Comparing the bash s

Re: [Rd] Dynamic linking to binary code from other packages??

2008-10-25 Thread Dirk Eddelbuettel
On 25 October 2008 at 16:05, Charles Danko wrote: | Dear R-devel, | | I am writing a package that needs some C++ functions from an external | SDK (Affymetrix fusion). The same functions are already compiled into | another package (affxparser). | | Can I dynamically link to the compiled code in

[Rd] Dynamic linking to binary code from other packages??

2008-10-25 Thread Charles Danko
Dear R-devel, I am writing a package that needs some C++ functions from an external SDK (Affymetrix fusion). The same functions are already compiled into another package (affxparser). Can I dynamically link to the compiled code in affxparser, rather than re-compiling these separately into my pac

Re: [Rd] 0 ^ NaN == Inf, why?

2008-10-25 Thread John Chambers
A small PS: John Chambers wrote: Along the line, notice that both R_pow and pow give 0^0 as 1. (Just at a guess, C might give 0^-0 as Inf, but I don't know how to test that in R.) I tried a little harder, and apparently the guess is wrong. It seems that pow(0, -0) is 1 in C. Would seem

Re: [Rd] 0 ^ NaN == Inf, why?

2008-10-25 Thread John Chambers
Stephen Milborrow wrote: > In R, 0 ^ NaN yields Inf. I would have expected NaN or perhaps 0. Is this > behaviour intended? > Well, it certainly follows from the implementation. In the R_pow C routine, double R_pow(double x, double y) /* = x ^ y */ { if(x == 1. || y == 0.) return(1.

Re: [Rd] pairwise.wilcox.test for paired samples

2008-10-25 Thread Peter Dalgaard
Matthias Kohl wrote: Dear R Core, pairwise.wilcox.test does not handle "paired = TRUE" correctly; e.g. The line wilcox.test(xi, xj, ...)$p.value should read wilcox.test(xi, xj, paired = paired, ...)$p.value Yes, fixed now. Thanks. -pd -- O__ Peter Dalgaard

Re: [Rd] R echoes integer literals incorrectly, under certain conditions (PR#13205)

2008-10-25 Thread murdoch
On 25/10/2008 10:45 AM, [EMAIL PROTECTED] wrote: > Full_Name: Stephen Milborrow > Version: R 2.8.0 > OS: Windows XP > Submission from: (NULL) (81.159.65.46) > > > Under certain conditions, R 2.8.0 incorrectly echoes integer literals without > the "L" suffix. R 2.7.2 is ok. > > To reproduce, cre

Re: [Rd] R echoes integer literals incorrectly, under certain conditions (PR#13204)

2008-10-25 Thread Duncan Murdoch
On 25/10/2008 10:45 AM, [EMAIL PROTECTED] wrote: Full_Name: Stephen Milborrow Version: R 2.8.0 OS: Windows XP Submission from: (NULL) (81.159.65.46) Under certain conditions, R 2.8.0 incorrectly echoes integer literals without the "L" suffix. R 2.7.2 is ok. To reproduce, create two files as f

[Rd] 0 ^ NaN == Inf, why?

2008-10-25 Thread Stephen Milborrow
In R, 0 ^ NaN yields Inf. I would have expected NaN or perhaps 0. Is this behaviour intended? >sessionInfo() R version 2.8.0 (2008-10-20) i386-pc-mingw32 locale: LC_COLLATE=English_United States.1252;LC_CTYPE=English_United States.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TI

[Rd] R echoes integer literals incorrectly, under certain conditions (PR#13204)

2008-10-25 Thread milbo
Full_Name: Stephen Milborrow Version: R 2.8.0 OS: Windows XP Submission from: (NULL) (81.159.65.46) Under certain conditions, R 2.8.0 incorrectly echoes integer literals without the "L" suffix. R 2.7.2 is ok. To reproduce, create two files as follows: a.R containing: source("b.R", echo=TRUE) b.

[Rd] pairwise.wilcox.test for paired samples

2008-10-25 Thread Matthias Kohl
Dear R Core, pairwise.wilcox.test does not handle "paired = TRUE" correctly; e.g. set.seed(13) x <- rnorm(20) g <- c(rep(1, 10), rep(2, 10)) wilcox.test(x ~ g)$p.value # 0.075 pairwise.wilcox.test(x, g)$p.value # 0.075, o.k wilcox.test(x ~ g, paired = TRUE)$p.value # 0.105 pairwise.wilcox.test(x

Re: [Rd] gfortran optimization problems

2008-10-25 Thread Simone Giannerini
Dave, yes, we have experienced different results in different platforms, the problem was partly due to the different versions of gfortran installed across platforms, are you using the same version for all the platforms? Clearly, gfortran is undergoing rapid changes so that the results might vary a