Re: [Rd] error message from lmer

2007-06-27 Thread Prof Brian Ripley
See the thread starting https://stat.ethz.ch/pipermail/r-devel/2007-June/046157.html https://stat.ethz.ch/pipermail/r-devel/2007-June/046160.html I can't reproduce this without knowing what is in your startup files: it should work with --vanilla, so please try that and try to eliminate whatever

[Rd] navel-gazing

2007-06-27 Thread Ben Bolker
I did some trawling on the ISI web of science, selecting all papers citing all papers with "R DEV COR TEAM" in the author field (which is how ISI seems to be tagging things). The results are interesting -- about 2400 references. Enjoy these summaries ... urlpref = "http://www.zoo.ufl.edu/bolke

[Rd] rbind.data.frame changes

2007-06-27 Thread Mark.Bravington
Dear R-devel Pre-2.5.0, 'rbind.data.frame(x,y,...)' would set the class of each column to be the class of that column in 'x'. This has changed now, because 'rbind.data.frame' first deletes any zero-row arguments; so if 'x' is a zero-row DF, the classes will be set to those in 'y'. This breaks my

[Rd] error message from lmer

2007-06-27 Thread Sebastian P. Luque
Hi, I've begun to use the lme4 package, rather than nlme, for more flexibility during modelling, and running the examples in lmer I receive this error message: ---<---cut here---start-->--- R> (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) Error in

[Rd] possible bug in conflicts() (PR#9760)

2007-06-27 Thread rmh
# R for Windows will not send your bug report automatically. # Please copy the bug report (after finishing it) to # your favorite email program and send it to # # [EMAIL PROTECTED] # ## Dare I say the word: bug. It looks to me like a bug i

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Prof Brian Ripley
On Wed, 27 Jun 2007, Peter Dalgaard wrote: > Prof Brian Ripley wrote: >> But R 2.5.0 does the same, and as far as I know R has done so for many >> past versions. >> >> You are asking the impossible: outputting Latin-1 in a Latin-2 >> environment. Remember that postscript() does not handle UTF-8,

[Rd] Rmpi and OpenMPI ?

2007-06-27 Thread Markus Schmidberger
Hello, I found your discussion about Rmpi and openMpi at the R-devels archive. Did you managed to run Rmpi on openMPI (completely)? We try to do this installation at a OS debian with the "openmpi-common" package, but it is not working. For example there is no "mpi.h" Thanks Markus -- Dipl.-T

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Peter Dalgaard
Prof Brian Ripley wrote: > But R 2.5.0 does the same, and as far as I know R has done so for many > past versions. > > You are asking the impossible: outputting Latin-1 in a Latin-2 > environment. Remember that postscript() does not handle UTF-8, and so > uses whatever it thinks the local 8-bit

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Prof Brian Ripley
But R 2.5.0 does the same, and as far as I know R has done so for many past versions. You are asking the impossible: outputting Latin-1 in a Latin-2 environment. Remember that postscript() does not handle UTF-8, and so uses whatever it thinks the local 8-bit encoding is, in your case either

[Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Petr Savicky
configure and make run OK, but make check failed for R version 2.5.1 RC (2007-06-26 r42068) on graphics with error: > ## The following two examples use latin1 characters: these may not > ## appear correctly (or be omitted entirely). > plot(1:10, 1:10, main = "text(...) examples\n

Re: [Rd] trivial typo in ?ks.test (PR#9759)

2007-06-27 Thread ripley
Thanks, now fixed for 2.5.1. (BTW, convention has it that sending things as trivial as this to R-devel suffices. Now I must remember to close the PR ) On Tue, 26 Jun 2007, [EMAIL PROTECTED] wrote: > In ?ks.test > > "if the sample size if less than 100 in" > > should be > > "if the sample

Re: [Rd] Rmpi and OpenMPI ?

2007-06-27 Thread Dirk Eddelbuettel
On 27 June 2007 at 12:21, Markus Schmidberger wrote: | Hello, | | I found your discussion about Rmpi and openMpi at the R-devels archive. | | Did you managed to run Rmpi on openMPI (completely)? The good news is that a few of us have formed a new maintainaer team for OpenMPI in Debian. New and

Re: [Rd] inherits() and virtual classes

2007-06-27 Thread Prof Brian Ripley
inherits() is not to do with S4 classes: it tests inheritance in the base class system. See ?is in package 'methods'. > is(jj, "onion") [1] TRUE On Wed, 27 Jun 2007, Robin Hankin wrote: > Hi > > How do I test for an object having a particular virtual class? > > In the following, "onion" is a

[Rd] inherits() and virtual classes

2007-06-27 Thread Robin Hankin
Hi How do I test for an object having a particular virtual class? In the following, "onion" is a virtual class, and "octonion" is a non-virtual class contained in onion. The last call to inherits() gives FALSE [R-2.5.0], when inherits.Rd led me to expect TRUE. setClass("onion", rep