[Rd] ANN: R for Bioinformatics (advanced R programming) Course

2005-11-22 Thread Seth Falcon
Robert and I will be teaching an advanced R programming course January 18-20, 2006 in Seattle. Learn more here: http://bioconductor.org/rforbioc The topics we plan to cover include: * Lexical Scope * Vectorization * Object Oriented Programming (S3 and S4) * Writing R packages * Database

[Rd] winMenuAdd

2005-11-22 Thread Martin Morgan
The following winMenuAdd("X") for (i in 1:20) winMenuAdd(paste("X",i, sep="/")) generates an (incorrect) error after adding 12 menu items: Error in winMenuAdd(menuname, NULL, NULL) : unable to add menu (base menu does not exist) More elaborate examples (e.g., adding menu items to each

[Rd] Inaccurate documentation for qr.R and qr.Q (PR#8347)

2005-11-22 Thread sims
This is a multi-part message in MIME format. --060805080907030400090708 Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 7bit The documentation in QR.Auxiliaries {base} states |qr.Q| returns part or all of *Q*, the order-nrow(X) orthogonal (unita

Re: [Rd] failure in `setClass' examples

2005-11-22 Thread Sebastian Luque
John Chambers <[EMAIL PROTECTED]> wrote: > There's nothing bad happening, and we should remove the setIs() example > from the setClass() documentation. > If you run example(setIs), you will see a slightly different version of > the same call to setIs(), but one that does not generate the warning

Re: [Rd] failure in `setClass' examples

2005-11-22 Thread John Chambers
There's nothing bad happening, and we should remove the setIs() example from the setClass() documentation. If you run example(setIs), you will see a slightly different version of the same call to setIs(), but one that does not generate the warning (because it includes the argument replace= to s

[Rd] failure in `setClass' examples

2005-11-22 Thread Sebastian Luque
Hello, Below is what I got running the examples from `setClass'. Could somebody please help explain why the last `setIs' call is returning the warning and whether this is expected? R> setClass("track", + representation(x="numeric", y="numeric")) [1] "track" R> setClass("

Re: [Rd] [PATCH] Add fpicflags for Intel(R) Fortran Compiler (PR#8344)

2005-11-22 Thread kugelfang
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Prof. Ripley, Prof Brian Ripley schrieb: | 1) The documented way to specify this is to set FPICFLAGS in | config.site: see the example in R-admin for the PG compilers. When you | tried that, what went wrong? Nothing went wrong. However, I was of

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread Arne Henningsen
On Tuesday 22 November 2005 17:34, Martin Maechler wrote: > > "Arne" == Arne Henningsen <[EMAIL PROTECTED]> > > on Tue, 22 Nov 2005 16:19:19 +0100 writes: > > . > > >> You are reporting as a bug in R a problem on your own system in > >> an=20 unreleased ('unstable') vers

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread Martin Maechler
> "Arne" == Arne Henningsen <[EMAIL PROTECTED]> > on Tue, 22 Nov 2005 16:19:19 +0100 writes: . >> You are reporting as a bug in R a problem on your own system in an=20 >> unreleased ('unstable') version of R. Arne> I used this version to check my R packages beca

Re: [Rd] [PATCH] Add fpicflags for Intel(R) Fortran Compiler (PR#8344)

2005-11-22 Thread ripley
1) The documented way to specify this is to set FPICFLAGS in config.site: see the example in R-admin for the PG compilers. When you tried that, what went wrong? 2) It seems strange to specify this for the Fortran compiler and not the C or C++ compiler. 3) You have suggested the change to a se

[Rd] install.packages in R 2.2.0

2005-11-22 Thread Iago Mosqueira
Dear all, I am having trouble with install.packages() when specifying a non-CRAN repository. The command below works in R 2.1.0 and R 2.1.1 compiled from source in Linux, bringing up the Tcl/Tk interface for selection, but in 2.2.0 I get > install.packages(repos='http://flr-project.org/R') Error

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread Liaw, Andy
From: [EMAIL PROTECTED] > > On Tuesday 22 November 2005 12:55, [EMAIL PROTECTED] wrote: [snip] > > Since it is unstable and=20 > > unreleased, such things are by definition not bugs in R. > > Sorry, I did not know this. I thought that my report could help you. > The next time when I will find a

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread ahenningsen
On Tuesday 22 November 2005 12:55, [EMAIL PROTECTED] wrote: > This message is in MIME format. The first part should be readable text, > while the remaining parts are likely unreadable without MIME-aware tools. > > --27464147-1978628741-1132653680=:25449 > Content-Type: TEXT/PLAIN; CHARSET=ISO-

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread Arne Henningsen
On Tuesday 22 November 2005 12:55, [EMAIL PROTECTED] wrote: > This message is in MIME format. The first part should be readable text, > while the remaining parts are likely unreadable without MIME-aware tools. > > --27464147-1978628741-1132653680=:25449 > Content-Type: TEXT/PLAIN; CHARSET=ISO-

[Rd] [PATCH] Add fpicflags for Intel(R) Fortran Compiler (PR#8344)

2005-11-22 Thread kugelfang
Full_Name: Danny van Dyk Version: R-2.2.0 OS: Gentoo/AMD64 Submission from: (NULL) (83.129.50.65) I have successfully compiled R-2.2.0 using ifc-9.0.026 on my x86_64 box. The only (minor) change that hade to be made was adding fpicflags="-fPIC" to configure.ac in case F77 matches either "ifc" (ol

Re: [Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread ripley
This message is in MIME format. The first part should be readable text, while the remaining parts are likely unreadable without MIME-aware tools. --27464147-1978628741-1132653680=:25449 Content-Type: TEXT/PLAIN; CHARSET=ISO-8859-1; format=flowed Content-Transfer-Encoding: QUOTED-PRINTABLE Con

[Rd] make check fails for R 2.3.0 (PR#8343)

2005-11-22 Thread ahenningsen
Full_Name: Arne Henningsen Version: 2.3.0, 2005-11-21, i686-pc-linux-gnu OS: SuSE Linux 9.0, Kernel 2.4.21 Submission from: (NULL) (134.245.140.242) I did not find any problems in "./configure" and "make", but "make check" fails: make[4]: Entering directory `/home/suapm095/Download/R-devel/tests

Re: [Rd] NAMESPACE, S4, and .onLoad

2005-11-22 Thread Prof Brian Ripley
On Mon, 21 Nov 2005, Seth Falcon wrote: > The Writing R Extensions manual instructs developers who use S4 > classes and methods in a package with a name space to: > >There needs to be an .onLoad action to ensure that the methods package >is loaded and attached: > > .onLoad <- funct

Re: [Rd] (PR#8337) formatC adds leading space -- on some Windoze

2005-11-22 Thread ripley
On Tue, 22 Nov 2005 [EMAIL PROTECTED] wrote: >> "KevinW" == Kevin Wright <[EMAIL PROTECTED]> >> on Mon, 21 Nov 2005 18:13:36 +0100 (CET) writes: > >KevinW> Full_Name: Kevin Wright >KevinW> Version: 2.2.0 >KevinW> OS: Windows 2000 > ^^^ > this must be part