i am waiting for the reply as
i am unable to proceed...;(
--
madhuri :)
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quot;, "fasta"):
Should be changed to:
fh = open("ls_MTbH37Rv.fasta")
for seq_record in SeqIO.read(fh, "fasta"):
I think that in some version of Biopython you would be able to use
just the name.
Best,
SB.
Python for Bioinformatics book: http://www.tinyurl.com/bio
On Mon, Jun 14, 2010 at 9:38 AM, Thomas Jollans wrote:
> On 06/14/2010 05:45 PM, madhuri vio wrote:
>>
>> i am still waiting for some help.
>
> WHAT?! Your behaviour on this list is making me really, really angry. We
> are not a tech support company. You are not paying for the privilege of
> s
On Mon, Jun 14, 2010 at 9:38 AM, Thomas Jollans wrote:
> On 06/14/2010 05:45 PM, madhuri vio wrote:
>>
>> i am still waiting for some help.
>
> Besides: your original TWO (why two??) posts got a couple of replies.
> One annoyed but in principle I think helpful one from myself, and one
> rather
On 14/06/2010 16:45, madhuri vio wrote:
i am still waiting for some help.
You cheeky git, this is simply *NOT* cricket! Your 1st post was timed
at 13:59 BST, the response from Thomas Jollans at 14:12. Your 2nd post
was at 15:02 and I replied at 15:12. Now you're back again at 16:45, to
On 06/14/2010 05:45 PM, madhuri vio wrote:
>
> i am still waiting for some help.
WHAT?! Your behaviour on this list is making me really, really angry. We
are not a tech support company. You are not paying for the privilege of
sending your mail here.
However, Sir, you are acting as if you were
On Mon, Jun 14, 2010 at 8:45 AM, madhuri vio wrote:
>
> i am still waiting for some help.
> --
> madhuri :)
>
You already have your help- the traceback tells you everything you
need to know. If you don't understand what the traceback is saying,
come back here and specifically ask about the p
i am still waiting for some help.
--
madhuri :)
--
http://mail.python.org/mailman/listinfo/python-list
On 14/06/2010 15:02, madhuri vio wrote:
i have tried this still unable to get an output
from Bio import Seq
from Bio import SeqIO
from Bio import SeqRecord
for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"):
print seq_record.id
print repr(seq_record.seq)
print len(seq_rec
i have tried this still unable to get an output
from Bio import Seq
from Bio import SeqIO
from Bio import SeqRecord
for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"):
print seq_record.id
print repr(seq_record.seq)
print len(seq_record)
python bio.py
Traceback (most recent ca
On 06/14/2010 02:59 PM, madhuri vio wrote:
> i cudnt run this!!
Take a deep breath, and read the error message. It's very informative,
and tells you exactly what the problem is, and how to fix it, if you'd
just try to understand it.
It would be much appreciated if you had a look at
http://www
i cudnt run this!!
and this was the error occured
for seq_record in SeqIO.parse("ls_MTbH37Rv.fasta","fasta"):
... print seq_record.id
... print repr(seq_record.seq)
... print len(seq_record)
...
Traceback (most recent call last):
File "", line 1, in
File "/var/lib/python-supp
Dear Students,
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biopython
En Tue, 09 Sep 2008 05:53:19 -0300, Beema Shafreen
<[EMAIL PROTECTED]> escribió:
Hi all,
I am using Biopython to fetch pumed Id's ,The module i use is (from Bio
import Entrez)
But i am getting this error
from Bio import Entrez
Traceback (most recent call last):
File &qu
On 9/9/08, Beema Shafreen <[EMAIL PROTECTED]> wrote:
> I am using Biopython to fetch pumed Id's ,The module i use is (from Bio
> import Entrez)
> But i am getting this error
>>>> from Bio import Entrez
> Traceback (most recent call last):
> File ""
>>> from Bio import Entrez
Traceback (most recent call last):
File "", line 1, in ?
ImportError: cannot import name Entrez
Can you import Bio, e.g.:
import Bio
? If not, check to see where it's installed and make sure the directory
containing Bio (or Bio.py) is in sys.pat
Hi all,
I am using Biopython to fetch pumed Id's ,The module i use is (from Bio
import Entrez)
But i am getting this error
>>> from Bio import Entrez
Traceback (most recent call last):
File "", line 1, in ?
ImportError: cannot import name Entrez
what should i do kno
On Apr 18, 12:28 pm, elventear <[EMAIL PROTECTED]> wrote:
> Hello,
>
> I know this is not the best place to ask this but I haven't had luck
> in the Biopython forums with my questions, so I'll just try here.
>
> I want to use the Martel package to do some p
Hello,
I know this is not the best place to ask this but I haven't had luck
in the Biopython forums with my questions, so I'll just try here.
I want to use the Martel package to do some parsing. I've found it to
be very powerful and convenient. Yet the documentation avaialb
Hi all,
Biopython's SProt module doesnt seem to work with current Uniprot KB .
do anyone have a parser to read Uniprot format files ?
regards,
KM
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