Francesco Pietra wrote:
hi:
with script
data = open('134-176_rectified_edited.pdb', 'r')
outp = open('134-176_renumbered.pdb', 'w')
for L in data:
if L[3] == 'M':
L = L[:24] + "%4d" % (int(L[24-28])+133) + L[28:]
outp.write(L)
i wanted to modify lines of the type:
ATOM 1 HH31
On Thu, Apr 23, 2009 at 3:59 PM, Francesco Pietra wrote:
> hi:
> with script
>
> data = open('134-176_rectified_edited.pdb', 'r')
> outp = open('134-176_renumbered.pdb', 'w')
>
> for L in data:
> if L[3] == 'M':
> L = L[:24] + "%4d" % (int(L[24-28])+133) + L[28:]
> outp.write(L)
>
>
> i wa
Francesco Pietra writes:
> $ python renumber.py 134-176_rectified.pdb
> Traceback (most recent call last):
> File "renumber.py", line 6, in
> L = L[:24] + "%4d" % (int(L[24-28])+133) + L[28:]
> ValueError: invalid literal for int() with base 10: ''
For this reason, it's best to break up b
Francesco Pietra wrote:
> hi:
> with script
>
> data = open('134-176_rectified_edited.pdb', 'r')
> outp = open('134-176_renumbered.pdb', 'w')
>
> for L in data:
>if L[3] == 'M':
> L = L[:24] + "%4d" % (int(L[24-28])+133) + L[28:]
>outp.write(L)
>
>
> i wanted to modify lines of the
