Hi there,
The problem has been solved. I 've decided to run the python script as
argument of qsub instead of run qsub from inside of the script itself. I
also use .wait() as suggest by colleagues above.
Final code goes here:
http://ompldr.org/vZDFiag
Thank you very much for helping.
--
View th
On Tue, Mar 13, 2012 at 1:35 PM, Robert Kern wrote:
> On 3/13/12 6:01 PM, ferreirafm wrote:
>> Robert Kern-2 wrote
>>> When you report a problem, you should copy-and-paste the output that you
>>> got and
>>> also state the output that you expected. I have no idea what you mean
>>> when
>>> you
>>>
On 3/13/12 6:01 PM, ferreirafm wrote:
Robert Kern-2 wrote
When you report a problem, you should copy-and-paste the output that you
got and
also state the output that you expected. I have no idea what you mean when
you
say "subprocess.Popen seems not accept to run "qsub" over a second
program."
Robert Kern-2 wrote
>
> When you report a problem, you should copy-and-paste the output that you
> got and
> also state the output that you expected. I have no idea what you mean when
> you
> say "subprocess.Popen seems not accept to run "qsub" over a second
> program."
>
Code goes here:
htt
On 3/13/12 3:59 PM, ferreirafm wrote:
Hi Robert,
Thanks for you kind replay and I'm sorry for my semantic mistakes.
Indeed, that's what I'm doing: qsub-ing different cshell scripts. Certainly,
that's not the best approach and the only problem.
It's not a problem to write out a script and have q
On 13/03/12 16:02, ferreirafm wrote:
> Hi James, thank you for your replay. Indeed, the problem is qsub. And as
> warned by Robert, I don't have functions properly, but just scripts.
>
>
> --
> View this message in context:
> http://python.6.n6.nabble.com/concatenate-function-tp4574176p4574511.
Hi James, thank you for your replay. Indeed, the problem is qsub. And as
warned by Robert, I don't have functions properly, but just scripts.
--
View this message in context:
http://python.6.n6.nabble.com/concatenate-function-tp4574176p4574511.html
Sent from the Python - python-list mailing lis
Hi Robert,
Thanks for you kind replay and I'm sorry for my semantic mistakes.
Indeed, that's what I'm doing: qsub-ing different cshell scripts. Certainly,
that's not the best approach and the only problem. I've unsuccessfully tried
to set an os.environ and call qsub from it. However, subprocess.Po
On 13/03/12 14:35, ferreirafm wrote:
> Hi List,
> I've coded three functions that I would like to concatenate. I mean, run
> them one after another. The third function depends on the results of the
> second function, which depends on the results of the first one. When I call
> one function after an
Hi Ian,
That what I have:
> burst.py
Your job 46665 ("top_n_pdb.qsub") has been submitted
Your job 4 ("extr_pdb.qsub") has been submitted
Your job 46667 ("combine_top.qsub") has been submitted
The first job runs quite well. The second is still runing and the third
issue the following:
> more
On 3/13/12 2:35 PM, ferreirafm wrote:
Hi List,
I've coded three functions that I would like to concatenate. I mean, run
them one after another. The third function depends on the results of the
second function, which depends on the results of the first one. When I call
one function after another,
On Tue, Mar 13, 2012 at 8:35 AM, ferreirafm wrote:
> Hi List,
> I've coded three functions that I would like to concatenate. I mean, run
> them one after another. The third function depends on the results of the
> second function, which depends on the results of the first one. When I call
> one fu
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