On Mon, Jun 14, 2010 at 11:02 AM, madhuri vio wrote:
> TypeError: Need a file handle, not a string (i.e. not a filename)
This says that the error is that you are using a filename where you
should be using a filehandle.
So this line:
for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"):
Sh
On Mon, Jun 14, 2010 at 9:38 AM, Thomas Jollans wrote:
> On 06/14/2010 05:45 PM, madhuri vio wrote:
>>
>> i am still waiting for some help.
>
> WHAT?! Your behaviour on this list is making me really, really angry. We
> are not a tech support company. You are not paying for the privilege of
> s
On Mon, Jun 14, 2010 at 9:38 AM, Thomas Jollans wrote:
> On 06/14/2010 05:45 PM, madhuri vio wrote:
>>
>> i am still waiting for some help.
>
> Besides: your original TWO (why two??) posts got a couple of replies.
> One annoyed but in principle I think helpful one from myself, and one
> rather
On 14/06/2010 16:45, madhuri vio wrote:
i am still waiting for some help.
You cheeky git, this is simply *NOT* cricket! Your 1st post was timed
at 13:59 BST, the response from Thomas Jollans at 14:12. Your 2nd post
was at 15:02 and I replied at 15:12. Now you're back again at 16:45, to
On 06/14/2010 05:45 PM, madhuri vio wrote:
>
> i am still waiting for some help.
WHAT?! Your behaviour on this list is making me really, really angry. We
are not a tech support company. You are not paying for the privilege of
sending your mail here.
However, Sir, you are acting as if you were
On Mon, Jun 14, 2010 at 8:45 AM, madhuri vio wrote:
>
> i am still waiting for some help.
> --
> madhuri :)
>
You already have your help- the traceback tells you everything you
need to know. If you don't understand what the traceback is saying,
come back here and specifically ask about the p
On 14/06/2010 15:02, madhuri vio wrote:
i have tried this still unable to get an output
from Bio import Seq
from Bio import SeqIO
from Bio import SeqRecord
for seq_record in SeqIO.read("ls_MTbH37Rv.fasta", "fasta"):
print seq_record.id
print repr(seq_record.seq)
print len(seq_rec
On 06/14/2010 02:59 PM, madhuri vio wrote:
> i cudnt run this!!
Take a deep breath, and read the error message. It's very informative,
and tells you exactly what the problem is, and how to fix it, if you'd
just try to understand it.
It would be much appreciated if you had a look at
http://www
En Tue, 09 Sep 2008 05:53:19 -0300, Beema Shafreen
<[EMAIL PROTECTED]> escribió:
Hi all,
I am using Biopython to fetch pumed Id's ,The module i use is (from Bio
import Entrez)
But i am getting this error
from Bio import Entrez
Traceback (most recent call last):
File "", line 1, in ?
Impo
>>> from Bio import Entrez
Traceback (most recent call last):
File "", line 1, in ?
ImportError: cannot import name Entrez
Can you import Bio, e.g.:
import Bio
? If not, check to see where it's installed and make sure the directory
containing Bio (or Bio.py) is in sys.pat
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