On Thursday, May 11, 2017 at 5:01:57 AM UTC-4, Mahmood Naderan wrote:
> Excuse me, I changed
>
> csv.writer(outstream)
>
> to
>
> csv.writer(outstream, delimiter =' ')
>
>
> It puts space between cells and omits "" around some content. However,
> between two lines there is a new empty line.
On Fri, May 12, 2017 at 8:03 PM, Peter Otten <__pete...@web.de> wrote:
> I don't have a Windows system to test, but doesn't that mean that on Windows
>
> with open("tmp.csv", "w") as f:
> csv.writer(f).writerows([["one"], ["two"]])
> with open("tmp.csv", "rb") as f:
> print(f.read())
>
> wo
Pavol Lisy wrote:
> On 5/11/17, Peter Otten <__pete...@web.de> wrote:
>> Mahmood Naderan via Python-list wrote:
>>> between two lines there is a new empty line. In other word, the first
>>> line is the first row of excel file. The second line is empty ("\n") and
>>> the third line is the second r
On 5/11/17, Peter Otten <__pete...@web.de> wrote:
> Mahmood Naderan via Python-list wrote:
>
>> Excuse me, I changed
>>
>> csv.writer(outstream)
>>
>> to
>>
>> csv.writer(outstream, delimiter =' ')
>>
>>
>> It puts space between cells and omits "" around some content.
>
> If your data doesn't conta
Thanks a lot for suggestions. It is now solved.
Regards,
Mahmood
--
https://mail.python.org/mailman/listinfo/python-list
Mahmood Naderan via Python-list wrote:
> Excuse me, I changed
>
> csv.writer(outstream)
>
> to
>
> csv.writer(outstream, delimiter =' ')
>
>
> It puts space between cells and omits "" around some content.
If your data doesn't contain any spaces that's fine. Otherwise you need a
way to dist
Excuse me, I changed
csv.writer(outstream)
to
csv.writer(outstream, delimiter =' ')
It puts space between cells and omits "" around some content. However, between
two lines there is a new empty line. In other word, the first line is the first
row of excel file. The second line is empty ("\
Thanks. That code is so simple and works. However, there are things to be
considered. With the CSV format, cells in a row are separated by ',' and for
some cells it writes "" around the cell content.
So, if the excel looks like
CHR1 11,232,445
The output file looks like
CHR1,"11,232,4
Mahmood Naderan via Python-list wrote:
> I wrote this:
>
> a = np.zeros((p.max_row, p.max_column), dtype=object)
> for y, row in enumerate(p.rows):
> for cell in row:
> print (cell.value)
> a[y] = cell.value
In the line above you overwrite the row in the numpy array
I wrote this:
a = np.zeros((p.max_row, p.max_column), dtype=object)
for y, row in enumerate(p.rows):
for cell in row:
print (cell.value)
a[y] = cell.value
print (a[y])
For one of the cells, I see
NM_198576.3
['NM_198576.3' 'NM_198576.3' 'NM_198576.3' 'NM_1985
Mahmood Naderan via Python-list wrote:
>>a = numpy.zeros((ws.max_row, ws.max_column), dtype=float)
>>for y, row in enumerate(ws.rows):
>> a[y] = [cell.value for cell in row]
>
>
>
> Peter,
>
> As I used this code, it gave me an error that cannot convert string to
> float for the first cell.
Hi,
I used the old fashion coding style to create a matrix and read/add the cells.
W = load_workbook(fname, read_only = True)
p = W.worksheets[0]
m = p.max_row
n = p.max_column
arr = np.empty((m, n), dtype=object)
for r in range(1, m):
for c in range(1, n):
d = p.cell(row=r, colu
>a = numpy.zeros((ws.max_row, ws.max_column), dtype=float)
>for y, row in enumerate(ws.rows):
> a[y] = [cell.value for cell in row]
Peter,
As I used this code, it gave me an error that cannot convert string to float
for the first cell. All cells are strings.
Regards,
Mahmood
--
https://
Hi,
I am confused with that. If you say that numpy is not suitable for my case and
may have large overhead, what is the alternative then? Do you mean that numpy
is a good choice here while we can reduce its overhead?
Regards,
Mahmood
--
https://mail.python.org/mailman/listinfo/python-list
On Wed, 5/10/17, Peter Otten <__pete...@web.de> wrote:
Subject: Re: Out of memory while reading excel file
To: python-list@python.org
Date: Wednesday, May 10, 2017, 6:30 PM
Mahmood Naderan via Python-list wrote:
> Well actually cells are treated as
strings and not integer
Mahmood Naderan via Python-list wrote:
> Well actually cells are treated as strings and not integer or float
> numbers.
May I ask why you are using numpy when you are dealing with strings? If you
provide a few details about what you are trying to achieve someone may be
able to suggest a workabl
On 10-5-2017 17:12, Mahmood Naderan wrote:
> So, I think numpy is unable to manage the memory.
That assumption is very likely to be incorrect.
>> np.array([[i.value for i in j] for j in p.rows])
I think the problem is in the way you feed your excel data into the numpy array
constructor. The co
rows. Mine is
about 100k. Currently, the task manager shows about 4GB of ram usage while
working with numpy.
Regards,
Mahmood
On Wed, 5/10/17, Peter Otten <__pete...@web.de> wrote:
Subject: Re: Out of memory while reading excel file
To: pytho
Mahmood Naderan via Python-list wrote:
> Thanks for your reply. The openpyxl part (reading the workbook) works
> fine. I printed some debug information and found that when it reaches the
> np.array, after some 10 seconds, the memory usage goes high.
>
>
> So, I think numpy is unable to manage th
Thanks for your reply. The openpyxl part (reading the workbook) works fine. I
printed some debug information and found that when it reaches the np.array,
after some 10 seconds, the memory usage goes high.
So, I think numpy is unable to manage the memory.
Regards,
Mahmood
On Wednesday, Ma
Mahmood Naderan via Python-list wrote:
> Hello,
>
> The following code which uses openpyxl and numpy, fails to read large
> Excel (xlsx) files. The file si 20Mb which contains 100K rows and 50
> columns.
>
>
>
> W = load_workbook(fname, read_only = True)
>
> p = W.worksheets[0]
>
> a=[]
>
>
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