I didn't make the XML file. And I don't like messing with other peoples
data. So I just want my SAX parser to ignore it. I can't help if other
people make it hard for me to read their xml file...
On Sat, 23 Apr 2005 13:48:49 -0600, Uche Ogbuji wrote:
> On Sat, 2005-04-23 at 1
I decided to use SAX to parse my xml file.
But the parser crashes on:
File "/usr/lib/python2.3/site-packages/_xmlplus/sax/handler.py", line 38, in
fatalError
raise exception
xml.sax._exceptions.SAXParseException: NCBI_Entrezgene.dtd:8:0: error in
processing external entity reference
This i
+0200, Fredrik Lundh wrote:
> Willem Ligtenberg wrote:
>
>> As I'm trying to write the code using cElementTree.
>> I stumble across one problem. Sometimes there are multiple values to
>> retrieve from one record for the same element. Like this:
>> ATP-binding ca
By the way, I know about findall, but when I iterate thruogh it like:
for x in function:
print 'function', x
I get:
function
function
But ofcourse I want the information in there...
On Fri, 22 Apr 2005 15:22:17 +0200, Willem Ligtenberg wrote:
> As I'm trying to wr
st as well, so that I can
store it in a list.
Thanks in advance,
Willem Ligtenberg
On Fri, 22 Apr 2005 13:48:15 +0200, Willem Ligtenberg wrote:
> This is all the info I need from the xml file:
> ID -->320632
>
> Name -->
>
1
6
Some can happen more than once in a record.
On Fri, 22 Apr 2005 02:41:46 -0400, William Park wrote:
> Willem Ligtenberg <[EMAIL PROTECTED]> wrote:
>> On Sun, 17 Apr 2005 02:16:04 +, William Park wrote:
>> > Care to post more details?
>&
Sorry I just decided that I want to use your solution, but I am wondering
is cElemenTree in expat or is that something different?
On Wed, 20 Apr 2005
08:03:00 -0400, Kent Johnson wrote:
> Willem Ligtenberg wrote:
>>>Willem Ligtenberg <[EMAIL PROTECTED]> wrote:
>>>
d I might go for the cElementTree later on, if the
ordinary SAX proves to slow...
On Wed, 20 Apr 2005 08:03:00 -0400,
Kent Johnson wrote:
> Willem Ligtenberg wrote:
>>>Willem Ligtenberg <[EMAIL PROTECTED]> wrote:
>>>
>>>>I want to parse a very large (2.4 g
On Sun, 17 Apr 2005 02:16:04 +, William Park wrote:
> Willem Ligtenberg <[EMAIL PROTECTED]> wrote:
>> I want to parse a very large (2.4 gig) XML file (bioinformatics
>> ofcourse :)) But I have no clue how to do that. Most things I see read
>> the entire xml file a
e the information in another object.
How should I do that?
Thanks in advance,
Willem Ligtenberg
A total newbie to python by the way.
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